mRNA_C-australica_Contig_1006.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1006.3.1
Unique NamemRNA_C-australica_Contig_1006.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1006.3.1 vs. uniprot
Match: A0A7S2E8Y4_TRICV (Glutamine-dependent NAD(+) synthetase n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E8Y4_TRICV)

HSP 1 Score: 202 bits (515), Expect = 5.520e-54
Identity = 118/213 (55.40%), Postives = 145/213 (68.08%), Query Frame = -3 
Query: 1458 QLLPWVRGTMAQGYLLVLGSANVDEALRGYMTKYDCSSADLNPIGAI-KVDLKRLLSWAATEYDYDVLSEIVAAPPTAELRP-QESKPPKTVLSTAKRMKMIWG*HTKN*APLGG*GRMTCVDRS---ACSRSLYMCGKNRA*ELLQRR*GCFFHFYGINRHKLTTLTPSYHAEQYSPDDNRFDLRQFLY-PRWTRQFRDIDTLV-ADSKKQQ 2075
            QLLPWVRG   +G+LLVLGSANVDE LRGYMTKYDCSSADLNPIGAI K DLKR+L WA+ EY Y VLSEI +APPTAELRP  +S+  +   +  + M M +       A LG  GR+  + R    +  + L +   N +   +  +   FF +Y  NRHK+ T+TP+YHAE YSPDDNRFDLRQFLY  RWTRQF  ID LV +DS +++
Sbjct:  239 QLLPWVRGR--RGFLLVLGSANVDEGLRGYMTKYDCSSADLNPIGAISKGDLKRMLQWASEEYGYTVLSEIGSAPPTAELRPITDSEQEEHTQTDEEDMGMTY-------AELGLYGRLRKISRCGPVSMFKKLCVTWSNLSPSEVAEKVKRFFFYYSANRHKMCTVTPAYHAEAYSPDDNRFDLRQFLYNTRWTRQFSVIDALVESDSNRKE 442
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BLAST of mRNA_C-australica_Contig_1006.3.1 vs. uniprot
Match: A0A7S1U1N7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U1N7_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.380e-52
Identity = 104/220 (47.27%), Postives = 139/220 (63.18%), Query Frame = 1 
Query:  649 HWFERSRVSKINPLRSLLLDPTINNIPPAKTHTELVERLRTQNIPHPSFDVDGDGVVSQEDYAMAKRFDLDGNGQLDEAEAQVGRRIMAERFFMRHPDDLHLYGGSYSQQSLADNINQLAKSKSFKKTMSELLEREQHHHTTGSDSVKQCMTLQDSKLTRHNFFADKMNTTAWNDFTRDPRHPTWLASKHHSGSRHQLEFMRKAEARERAQELLNLSWGP 1308
            + F R + S  NPLR+ LLDP +NN+  + ++ EL ER +  NIPH S+D+DGDG VSQED  +AKRFDLDGNG LD  E +VG+RI+AE FF RH +D+HLYG  Y  +S+ +N+  LA++ +F KTM+ L   E+  +  GS  VK C+TL D K  RH ++ DK + TAWND+   PR    L S   SGSR  L  +RK   R+R   +L     P
Sbjct:  132 NMFSRPKPSTKNPLRTALLDPEVNNLIQSGSYHELAERRKMLNIPHASYDIDGDGFVSQEDLFLAKRFDLDGNGVLDPDEREVGKRILAEEFFNRHAEDIHLYGDEYEGKSVKENVKALARNVNFFKTMTNLHNMEKTFNERGSMQVKDCLTLSDPKQLRHTWYTDKFDATAWNDYGAAPRRAA-LKSMQQSGSREHLFSLRKIADRDRCAAMLKRKTKP 350
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BLAST of mRNA_C-australica_Contig_1006.3.1 vs. uniprot
Match: A0A7S3Y6T4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6T4_HETAK)

HSP 1 Score: 197 bits (501), Expect = 1.780e-52
Identity = 117/216 (54.17%), Postives = 142/216 (65.74%), Query Frame = -3 
Query: 1464 IEQLLPWVRGTMAQGYLLVLGSANVDEALRGYMTKYDCSSADLNPIGAI-KVDLKRLLSWAATEYDYDVLSEIVAAPPTAELRPQ-ESKPPKTVLSTAKRMKMIWG*HTKN*APLGG*GRMTCVDRS---ACSRSLYMCGKNR-A*ELLQRR*GCFFHFYGINRHKLTTLTPSYHAEQYSPDDNRFDLRQFLY-PRWTRQFRDIDTLVA---DSKK 2081
            + QL PWVRG    G+LLVLGSANVDE LRGYMTKYDCSSADLNPIG+I K+DLKRLL+WAA  + +  L+E+  APPTAELRP    +  +      + M M +       A LG  GR+  + R    +  R+L +  + +    ++  +   FF FY INRHK+TT+TPSYHAEQYSPDDNRFD RQFLY  RW RQFR ID LV    DSKK
Sbjct:  192 LAQLTPWVRGR--SGFLLVLGSANVDEGLRGYMTKYDCSSADLNPIGSISKLDLKRLLTWAARRFGWPALAEVEGAPPTAELRPNLGGEGEEHTQLDEEDMGMSY-------AELGDFGRLRMLQRCGPVSMFRTLCVAWRGQHTPSIVAEKVKRFFRFYSINRHKMTTVTPSYHAEQYSPDDNRFDHRQFLYNTRWPRQFRKIDLLVQEIDDSKK 398
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BLAST of mRNA_C-australica_Contig_1006.3.1 vs. uniprot
Match: A0A7S0BYR7_9STRA (Glutamine-dependent NAD(+) synthetase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BYR7_9STRA)

HSP 1 Score: 199 bits (506), Expect = 3.160e-52
Identity = 116/227 (51.10%), Postives = 148/227 (65.20%), Query Frame = -3 
Query: 1434 QLLPWVRGTMAQGYLLVLGSANVDEALRGYMTKYDCSSADLNPIGAI-KVDLKRLLSWAATEYDYDVLSEIVAAPPTAELRPQESKPPKTVLSTAKRMKMIWG*HTKN*AP--------LGG*GRMTCVDRS---ACSRSLYMCGKNRA*ELLQRR*GCFFHFYGINRHKLTTLTPSYHAEQYSPDDNRFDLRQFLY-PRWTRQFRDIDTLVADSKKQQ*ISN**VK 2075
            QLLPWVRGT   G+LLVLGSANVDE LRGYMTKYDCSSADLNPIGAI K+DLKR+L WA  EYD  +L EI +APPTAELRP        +++T    +   G HT+            LG  GR+  + R    +  R L +   + + + + ++   FF++Y +NRHK+ T+TP+YHAE YSPDDNRFDLRQFLY  RWTRQF  ID LV   ++   +++  +K
Sbjct:  258 QLLPWVRGT--NGFLLVLGSANVDEGLRGYMTKYDCSSADLNPIGAISKLDLKRMLVWARIEYDMPILEEIASAPPTAELRP--------IVATDGEGE---GEHTQTDEDDMGMTYEELGHFGRLRKLSRCGPVSMFRKLRVTWSHLSSDQVAKKVKRFFYYYSVNRHKMCTITPAYHAEGYSPDDNRFDLRQFLYNTRWTRQFAMIDNLVRKDEQNVTVASSNIK 471
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BLAST of mRNA_C-australica_Contig_1006.3.1 vs. uniprot
Match: A0A6G0XTQ1_9STRA (Glutamine-dependent NAD(+) synthetase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTQ1_9STRA)

HSP 1 Score: 203 bits (517), Expect = 3.600e-52
Identity = 117/211 (55.45%), Postives = 137/211 (64.93%), Query Frame = -3 
Query: 1464 IEQLLPWVRGTMAQGYLLVLGSANVDEALRGYMTKYDCSSADLNPIGAI-KVDLKRLLSWAATEYDYDVLSEIVAAPPTAELRPQESKPPKTVLSTAKRMKMIWG*HTKN*APLGG*GRMTCVDRSA---CSRSLYMCGKNRA*ELLQRR*GCFFHFYGINRHKLTTLTPSYHAEQYSPDDNRFDLRQFLY-PRWTRQFRDIDTLVADSKK 2081
            + QLLPWVR     G+LLVLGSANVDEALRGYMTKYDCSSADLNPIGA+ K DLKR L++AA +Y Y  L+EIVAAPPTAELRP       T +   + M M +         L   GR+  +DRS      R L     + +   +  +   FF +YG+NRHK+TTLTPSYHAE YSPDDNRFDLR FLY  +WTRQF  ID L  D  K
Sbjct:  507 LAQLLPWVRSR--SGFLLVLGSANVDEALRGYMTKYDCSSADLNPIGAVSKTDLKRFLAYAAQKYSYPTLAEIVAAPPTAELRPTSGTGEHTQVDE-EDMGMTY-------EELSWFGRLRKIDRSGPLWMFRKLGAIWTHLSSTEIAAKVKRFFFYYGVNRHKMTTLTPSYHAENYSPDDNRFDLRPFLYNSKWTRQFASIDALATDMDK 707
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BLAST of mRNA_C-australica_Contig_1006.3.1 vs. uniprot
Match: A0A7S2HYS5_9STRA (Glutamine-dependent NAD(+) synthetase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYS5_9STRA)

HSP 1 Score: 198 bits (503), Expect = 4.820e-52
Identity = 114/220 (51.82%), Postives = 144/220 (65.45%), Query Frame = -3 
Query: 1446 QLLPWVRGTMAQGYLLVLGSANVDEALRGYMTKYDCSSADLNPIGAI-KVDLKRLLSWAATEYDYDVLSEIVAAPPTAELRPQESK-----PPKTVLSTAKRMKMIWG*HTKN*APLGG*GRMTCVDRS---ACSRSLYMCGKNRA*ELLQRR*GCFFHFYGINRHKLTTLTPSYHAEQYSPDDNRFDLRQFLY-PRWTRQFRDIDTLVADSKKQQ*ISN 2075
            QLLPWVRG   +G+LLVLGSANVDE LRGYMTKYDCSSADLNPIGAI K+DLK++L WAA  Y ++VL EI  APPTAELRP E         +   +  + M M +         LG  GR+  + R    +  R L +   +     +  +   FF++Y +NRHK+ T+TP+YHAE YSPDDNRFDLRQFLY  RWTRQF  ID++V  S++++  SN
Sbjct:  268 QLLPWVRGR--KGFLLVLGSANVDEGLRGYMTKYDCSSADLNPIGAISKLDLKKMLHWAAETYGHNVLDEIAGAPPTAELRPIERDGENGGEAEHTQTDEEDMGMTY-------TELGFYGRLRKISRCGPVSMFRKLSVTWSHLTLREVADKVKRFFYYYSVNRHKMCTVTPAYHAEAYSPDDNRFDLRQFLYNTRWTRQFAVIDSIVEASEQEEDSSN 478
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BLAST of mRNA_C-australica_Contig_1006.3.1 vs. uniprot
Match: A0A835ZEW9_9STRA (Glutamine-dependent NAD(+) synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEW9_9STRA)

HSP 1 Score: 203 bits (517), Expect = 6.830e-52
Identity = 117/208 (56.25%), Postives = 136/208 (65.38%), Query Frame = -3 
Query: 1473 IEQLLPWVRGTMAQGYLLVLGSANVDEALRGYMTKYDCSSADLNPIGAI-KVDLKRLLSWAATEYDYDVLSEIVAAPPTAELRPQESKPPKTVLSTAKRMKMIWG*HTKN*APLGG*GRMTCVDRS---ACSRSLYMCGKNRA*ELLQRR*GCFFHFYGINRHKLTTLTPSYHAEQYSPDDNRFDLRQFLYP-RWTRQFRDIDTLVAD 2081
            + QLLPW RG    G+LLVLGSANVDE+LRGYMTKYDCSSADLNPIGAI KVDLKR+LSWAA  Y +D L+EI AAPPTAELRP E    +      +  ++           L   GR+  V      +  RSL       A   +  +   FF+FYG+NRHK+TTLTP+YHAE YSPDDNRFDLR FLY  RW RQFRDID +  D
Sbjct:  544 LAQLLPWARGR--PGFLLVLGSANVDESLRGYMTKYDCSSADLNPIGAISKVDLKRMLSWAAERYGWDSLTEIGAAPPTAELRPME----EGADDGGEHSQLDEDDMGMTYEELSHFGRLRKVGLCGPVSMFRSLVALWPALAPSAVAAKVKLFFYFYGVNRHKMTTLTPAYHAEAYSPDDNRFDLRPFLYNMRWPRQFRDIDAMAGD 745
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BLAST of mRNA_C-australica_Contig_1006.3.1 vs. uniprot
Match: F0W2J8_9STRA (Glutamine-dependent NAD(+) synthetase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W2J8_9STRA)

HSP 1 Score: 202 bits (514), Expect = 9.270e-52
Identity = 110/206 (53.40%), Postives = 136/206 (66.02%), Query Frame = -3 
Query: 1479 IEQLLPWVRGTMAQGYLLVLGSANVDEALRGYMTKYDCSSADLNPIGAI-KVDLKRLLSWAATEYDYDVLSEIVAAPPTAELRPQESKPPKTVLSTAKRMKMIWG*HTKN*APLGG*GRMTCVDRSA---CSRSLYMCGKNRA*ELLQRR*GCFFHFYGINRHKLTTLTPSYHAEQYSPDDNRFDLRQFLYP-RWTRQFRDIDTLV 2081
            + QLLPWVR     G+LLVL SANVDEALRGYMTKYDCSS D+NPIGAI K DLK+LL+WA+  Y++  L ++V APPTAELRP  +   + V++     ++       +   LG  GR+  V R       + L +   +     +  +   F +FY INRHK+TTLTPSYHAE YSPDDNRFDLR FLYP +WTRQFRDIDTL 
Sbjct:  505 LAQLLPWVRSK--HGFLLVLSSANVDEALRGYMTKYDCSSGDINPIGAISKCDLKKLLTWASVRYNFPSLQKVVEAPPTAELRPMANNTSQEVVNELSHSQLDEADMGMSYEELGWFGRIRKVHRCGPLWMFKKLVLVWNHLTPPAVAEKVKRFVYFYSINRHKMTTLTPSYHAESYSPDDNRFDLRPFLYPSQWTRQFRDIDTLA 708
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BLAST of mRNA_C-australica_Contig_1006.3.1 vs. uniprot
Match: A0A7S0LDJ2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LDJ2_9EUKA)

HSP 1 Score: 191 bits (485), Expect = 1.190e-51
Identity = 111/206 (53.88%), Postives = 130/206 (63.11%), Query Frame = -3 
Query: 1479 IEQLLPWVRGTMAQGYLLVLGSANVDEALRGYMTKYDCSSADLNPIGAI-KVDLKRLLSWAATEYDYDVLSEIVAAPPTAELRPQESKPPKTVLSTAKRMKMIWG*HTKN*APLGG*GRMTCVDR----SACSRSLYMCGKNRA*ELLQRR*GCFFHFYGINRHKLTTLTPSYHAEQYSPDDNRFDLRQFLYPRWTRQFRDIDTLV 2081
            + QLLPW RG    G+LLVLGSANVDEALRGYMTKYDCSSAD+NPIG I K DLK  L +AA EY Y  L+++V APPTAELRP      +   +    M M +         LG  GR+  ++R    S  +  L   G   +   +  +   FF  YG NRHKLTTLTPSYHAE YSPDDNRFDLRQFLYP W RQF  +D +V
Sbjct:   81 LAQLLPWTRGR--GGFLLVLGSANVDEALRGYMTKYDCSSADINPIGGISKGDLKSFLRYAAKEYGYSALADVVEAPPTAELRPLSGD--EVEQTDEADMGMTY-------EELGEYGRLRKIERCGPVSMFTALLGKWGGRLSPSDIAGKVKHFFSSYGRNRHKLTTLTPSYHAEGYSPDDNRFDLRQFLYPNWERQFATVDQIV 275
[Close]
BLAST of mRNA_C-australica_Contig_1006.3.1 vs. uniprot
Match: A0A485LD09_9STRA (Glutamine-dependent NAD(+) synthetase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LD09_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.230e-51
Identity = 117/207 (56.52%), Postives = 137/207 (66.18%), Query Frame = -3 
Query: 1476 IEQLLPWVRGTMAQGYLLVLGSANVDEALRGYMTKYDCSSADLNPIGAI-KVDLKRLLSWAATEYDYDVLSEIVAAPPTAELRPQESKPPKTVLSTAKRMKMIWG*HTKN*APLGG*GRMTCVDRSA---CSRSLYMCGKNRA*ELLQRR*GCFFHFYGINRHKLTTLTPSYHAEQYSPDDNRFDLRQFLY-PRWTRQFRDIDTLVA 2081
            + QLLPWVR     G+LLVLGSANVDEALRGYMTKYDCSSADLNPIGA+ K DLKRLL +A+T+Y Y  L+EIVAAPPTAELRP   +   T +   + M M +         L   GR+  +DR       R L     + +   +  +   FF +YGINRHK+TTLTPSYHAE YSPDDNRFDLR FLY  +WTRQF  ID L A
Sbjct:  506 LAQLLPWVRSR--SGFLLVLGSANVDEALRGYMTKYDCSSADLNPIGAVSKTDLKRLLVYASTQYKYPTLAEIVAAPPTAELRPTSGEGEHTQVDE-EDMGMTYD-------ELSWFGRLRKIDRCGPLWMFRKLGAVWSHLSPLEIAAKVKRFFFYYGINRHKMTTLTPSYHAENYSPDDNRFDLRPFLYNSKWTRQFESIDILAA 702
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1006.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2E8Y4_TRICV5.520e-5455.40Glutamine-dependent NAD(+) synthetase n=2 Tax=Trie... [more]
A0A7S1U1N7_9STRA1.380e-5247.27Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3Y6T4_HETAK1.780e-5254.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0BYR7_9STRA3.160e-5251.10Glutamine-dependent NAD(+) synthetase n=1 Tax=Prob... [more]
A0A6G0XTQ1_9STRA3.600e-5255.45Glutamine-dependent NAD(+) synthetase n=1 Tax=Apha... [more]
A0A7S2HYS5_9STRA4.820e-5251.82Glutamine-dependent NAD(+) synthetase n=1 Tax=Heli... [more]
A0A835ZEW9_9STRA6.830e-5256.25Glutamine-dependent NAD(+) synthetase n=1 Tax=Trib... [more]
F0W2J8_9STRA9.270e-5253.40Glutamine-dependent NAD(+) synthetase n=1 Tax=Albu... [more]
A0A7S0LDJ2_9EUKA1.190e-5153.88Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A485LD09_9STRA1.230e-5156.52Glutamine-dependent NAD(+) synthetase n=1 Tax=Apha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1006contigC-australica_Contig_1006:3971..8898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJ07
Model size2284
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons17
Evalue6.68e-28
EggNOG OGs2EMSJ@1|root,2SRCT@2759|Eukaryota
Cds size1344
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586740.347786-UTR-C-australica_Contig_1006:3970..39941682586740.347786-UTR-C-australica_Contig_1006:3970..3994Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1006 3971..3994 +
1682586740.4818575-UTR-C-australica_Contig_1006:7306..75741682586740.4818575-UTR-C-australica_Contig_1006:7306..7574Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1006 7307..7574 +
1682586740.4917607-UTR-C-australica_Contig_1006:7652..77441682586740.4917607-UTR-C-australica_Contig_1006:7652..7744Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1006 7653..7744 +
1682586740.501963-UTR-C-australica_Contig_1006:7918..80051682586740.501963-UTR-C-australica_Contig_1006:7918..8005Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1006 7919..8005 +
1682586740.5105164-UTR-C-australica_Contig_1006:8166..82451682586740.5105164-UTR-C-australica_Contig_1006:8166..8245Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1006 8167..8245 +
1682586740.5204794-UTR-C-australica_Contig_1006:8362..84031682586740.5204794-UTR-C-australica_Contig_1006:8362..8403Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1006 8363..8403 +
1682586740.529811-UTR-C-australica_Contig_1006:8484..85481682586740.529811-UTR-C-australica_Contig_1006:8484..8548Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1006 8485..8548 +
1682586740.5388072-UTR-C-australica_Contig_1006:8613..88981682586740.5388072-UTR-C-australica_Contig_1006:8613..8898Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1006 8614..8898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586740.364279-CDS-C-australica_Contig_1006:3994..40711682586740.364279-CDS-C-australica_Contig_1006:3994..4071Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 3995..4071 +
1682586740.3742154-CDS-C-australica_Contig_1006:4149..42331682586740.3742154-CDS-C-australica_Contig_1006:4149..4233Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 4150..4233 +
1682586740.3852453-CDS-C-australica_Contig_1006:4315..45801682586740.3852453-CDS-C-australica_Contig_1006:4315..4580Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 4316..4580 +
1682586740.400159-CDS-C-australica_Contig_1006:4664..49201682586740.400159-CDS-C-australica_Contig_1006:4664..4920Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 4665..4920 +
1682586740.4110317-CDS-C-australica_Contig_1006:5134..52331682586740.4110317-CDS-C-australica_Contig_1006:5134..5233Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 5135..5233 +
1682586740.419229-CDS-C-australica_Contig_1006:5509..56361682586740.419229-CDS-C-australica_Contig_1006:5509..5636Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 5510..5636 +
1682586740.4275544-CDS-C-australica_Contig_1006:5965..60351682586740.4275544-CDS-C-australica_Contig_1006:5965..6035Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 5966..6035 +
1682586740.4414296-CDS-C-australica_Contig_1006:6238..63231682586740.4414296-CDS-C-australica_Contig_1006:6238..6323Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 6239..6323 +
1682586740.4523907-CDS-C-australica_Contig_1006:6400..65031682586740.4523907-CDS-C-australica_Contig_1006:6400..6503Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 6401..6503 +
1682586740.4621167-CDS-C-australica_Contig_1006:6811..69021682586740.4621167-CDS-C-australica_Contig_1006:6811..6902Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 6812..6902 +
1682586740.4719713-CDS-C-australica_Contig_1006:7219..73061682586740.4719713-CDS-C-australica_Contig_1006:7219..7306Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 7220..7306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1006.3.1prot_C-australica_Contig_1006.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1006 3995..7306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1006.3.1

>prot_C-australica_Contig_1006.3.1 ID=prot_C-australica_Contig_1006.3.1|Name=mRNA_C-australica_Contig_1006.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=448bp
MGGSKARERTSRGVSNSRAHASHLVSHRSRSSISSSKFPPPSGPASVRTL
HSLRSNNQRQERPPSRAASSARPTTAPGSCIPNAAASYRPKTADSGFLSM
ARLSSIATNPTLSASCSASNLLTADEDGIPLGLSEMDAEELEVYVDIIKE
KLEDEKASKAARRRQRTRMLGGDNSMHSGPSMGSETAGLPSERCHSAADS
DVKRLSKTHWFERSRVSKINPLRSLLLDPTINNIPPAKTHTELVERLRTQ
NIPHPSFDVDGDGVVSQEDYAMAKRFDLDGNGQLDEAEAQVGRRIMAERF
FMRHPDDLHLYGGSYSQQSLADNINQLAKSKSFKKTMSELLEREQHHHTT
GSDSVKQCMTLQDSKLTRHNFFADKMNTTAWNDFTRDPRHPTWLASKHHS
GSRHQLEFMRKAEARERAQELLNLSWGPELGSCRRIQLITRTDVENS*
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mRNA from alignment at C-australica_Contig_1006:3971..8898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1006.3.1 ID=mRNA_C-australica_Contig_1006.3.1|Name=mRNA_C-australica_Contig_1006.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4928bp|location=Sequence derived from alignment at C-australica_Contig_1006:3971..8898+ (Chrysoparadoxa australica CS_1217)
AGGGGCCCTTCTATACAACAAGTAATGGGGGGGTCTAAGGCCAGAGAAAG
GACATCAAGGGGGGTCTCTAACTCCAGGGCCCACGCTTCACATCTTGTTA
GGTTTGTTCATCATCGTCTTCGCTTCACCCTTCCCCTACTCCAAACTTAG
GCCATCCCTCCTTCCCCTCCCCACGGCAGCCACAGATCTCGATCATCAAT
CTCTTCTAGCAAGTTTCCTCCCCCCTCTGGGCCTGCTTCTGTGCGTACGC
TTCATTCTCTAAGGTGCGGGCCAATAGAGAGGAAGTGGAAAAGGGTTTTG
AGAGGGAAAGAGCCGAGCTCACAAGTCGTCATTATCTTTTGCCAGGTCTA
ATAACCAGAGACAAGAAAGGCCACCCTCTAGAGCAGCAAGCTCTGCCAGG
CCCACGACAGCGCCTGGATCATGTATTCCAAACGCAGCTGCCTCATACAG
GCCCAAGACAGCAGATTCAGGATTCTTATCAATGGCTCGGCTCAGCTCCA
TTGCGACTAATCCCACTCTTAGTGCCTCCTGCTCCGCCTCAAATCTTCTC
ACGGCAGATGAAGATGGCATACCTCTAGGCTTGAGTGAGATGGATGCTGA
GGAACTGGAGGTGAGAACCCTTTTATACAACGCGAACCTGTATCCATAGT
TCTCTGCCTTGACGCCCTGCCCTGCCTGCTTGCTTACCTACCAGGTTTAC
GTTGATATTATTAAGGAGAAGCTAGAGGATGAGAAGGCATCAAAAGCAGC
CCGGAGGAGACAGAGGACACGTATGTTGGGAGGGGATAACTCCATGCACT
CTGGTCCTTCCATGGGCAGTGAGACTGCGGGACTGCCTAGCGAGCGATGC
CACAGTGCAGCTGACTCTGATGTGAAGAGACTTTCTAAGACACACTGGTT
CGAGCGGAGCAGAGTTTCAAAGATAAACCCTCTGCGGTCTCTGCTGCTGG
GTAATGCCAATCTTATTCTCATTTACTCTAGTTAAACCACCAACCCCTAG
CACGGCCCCCTCACCAGCCTATAGGACCGTTTCGATTAGTATGCGCGACT
TGGGCATCTTTTGCGTGCTTATCAATGCTCTCGCACTCAATTGGCTCACC
CCTCCCCAAATACCTGGTGCCTCAGTCCTTGACCCTTACCCTGATAACCA
ATTCCTTTCATCAGATCCCACAATCAACAACATCCCGCCTGCCAAGACGC
ATACTGAGCTGGTTGAACGTTTGCGTACTCAGAACATCCCACATCCCTCC
TTTGATGTGGATGGTAAGTGTGAGGCAGAGATGGGGCAGCTTGGCCTCTT
TTCCAGCAAACTCACTAACTCACTGCCCACTCAGTCACTGACTGACCCAC
GTACTAAAGCATATGACTTTGATCCTCTCCTCCTCACCAACAAACAGCCA
AAATAAGTGATCACCTCCTGTGATAGTGTTACTGAATTTCACGCTGATTG
GATAGCAGAAGCAGAGCCTCAACCCATACGTCTTTTTCTGCTCCCTCAAC
TGCAAGACGCTATTCCACTTCTGCTCCTTCCGCTGCCAGGTGATGGAGTG
GTCAGCCAGGAGGACTATGCGATGGCAAAAAGATTTGACCTTGATGGCAA
TGGCCAACTGGATGAAGCTGAGGCGCAGGTTGGAAGAAGGATAATGGCGG
AGAGATTCTTCATGAGGTGAGCTACAGACTGACTCACTGCCCTCCGACTG
ACTCGCTGAATCACTGAAGTAACGCATGTTAATGACATTTACCAGCTATC
TACTCTGTGCTTGCTAATACCACATGATCACCACCACACTTAACAAACCT
GGTGACGCATACAAAGAAATCTGAGCCATGAACTTGAAGATGTTAGCGAG
GACAGTGGTGTACCTTTGCTCCTCAATTCCTCTCTTTCTCTCTCTCTCCT
TCTCTGGCACAATACCCTTCATTGAACAAAGATCATCTGATGCCGCTTTC
TCTCTCTCCTTCCTCTTTATACTTCTTTGTACATCTGCATCTCAGGCACC
CTGATGACCTGCATCTATATGGAGGATCATACAGTCAACAGAGCCTTGCG
GATAACATCAATCAGGTGTGAGAAAGAGCAGATGACTGTCCTATCACCTA
GTCTTTTGCCTATTTATTGGATATCTTACTGTAGGTTGCCTCCTTCGCCT
CAGTCAATGCATGCTCTCTCCCTGTACTGCTTCACCTGTTGCTGCTTCTC
TCTTAGCTGCCAATCAATGTAAACAACGAGCCATTGCATCCAATCTGACC
CCTCTGTTTCCGTGGCAGCTGGCCAAGAGCAAGAGCTTCAAGAAAACCAT
GTCAGAGCTCCTGGAGAGGGAGCAACACCACCACACAACAGGATCAGATT
CAGGTAACATTGTTTGACTTGCTTATTCCAGAAATACAGTGACCCTATAA
CTAAAATTACCCTTCCTCATACTCTCTCAGTGAAACAGTGCATGACCTTG
CAGGACAGCAAGCTGACTCGTCACAACTTCTTTGCTGACAAGATGAACAC
AACAGCTTGGAATGACTTTACTCGCGATCCCAGGTAATGAGTGAGTCAGC
TTTCTTGCGGGGTTAGGGTAAAGTAGCAACCCATCGCAGGGGGGGGCTGG
TGTACTCGTTCATTGCTCCTGTGTTATCACTCTCATAATGAGAAGCAAAA
ATGGCCATGCCAACTGCATCATTTTCTTCCCTTGTAGTGTGTTGGGCCCT
CTGACTCGTAAACTATCCGTTACTCGATCAAGCTCATATATAGTTACTTC
AGTAACCCTCGCATACGGTCACCCAGCGCAACTTGTTGCTCACCACCAGT
TCGTGCATCACCTCAATTTTTACGTTTGACTAATGCATCAGGCACCCAAC
ATGGTTGGCATCCAAGCATCACTCTGGCAGCAGGCACCAGCTGGAATTTA
TGAGAAAGGCAGAGGCGCGAGAGAGGGCCCAGGTATACATATGCCTAGCT
TTTCCCCCCTTTTTATCTTTTCACTGTGCTAAGGACTCGTTGCACTATAT
CATTTGAACAACAGCTAACCCTTGCCAACTGATAGCTGATCATCTGCCTA
TGTGAAGAGCTGGTAAACACCTGGCTTGTGTTAGAGTCCGCAAGTCCTGC
ATTATATTTGCCAATACTTCTTCCGCACAGCATTTTCTCCGCCTGAAATT
TGCACAGAACGAATCACCTTATACAGGAGTAGGCAGGAGAGCTATGAAGT
AGCTCTCTCACCTCTCACTTGCATGCCAACTGACCTTGCCTTTCCACAGG
AACTCCTGAATCTCTCTTGGGGCCCAGAGCTAGGCTCATGTCGACGCATC
CAGCTCATCACCAGGACTGATGTTGAGAACTCCTAGAGCAAGCAAGATGC
GCACTCCTTTCCATTGGCATCTTGCTGTCGTGGTGACTCAAGAAACCAAT
CCTTCACCTACTAATTACTTATTCATTGCTGTTTCTTGCTGTCAGCTACA
AGTGTATCGATGTCTCTAAACTGTCTAGTCCATCGAGGGTAGAGGAACTG
GCGCAAGTCAAACCGGTTGTCGTCTGGCGAGTACTGCTCTGCATGGTAGC
TCGGGGTAAGGGTTGTGAGCTTGTGGCGATTGATGCCATAGAAGTGAAAG
AAACGCTTGACCTGTTGGATTAAAAGGAAAGCAAGTGACTGTACTGTGGC
TGTCGAGCACGAAATGAGAAACGGAGAGATAGATCCCTACCTTCTCTGCA
ACAGCTCCTATGCTCTGTTCTTTCCACACATGTACAAGCTTCTTGAACAT
GCTGACCGGTCCACACAAGTCATTCTATGTGGCCCCAGCACATGCACAAC
ATATGGAGTGAGCACGGATGCGCAGGAGTAATTTAGTAGGGCATTATACA
ACTCAGCTGACTCAGTGGATTAGATTGATCCGCAGCCCTTCAGGTCAGGA
ATTTGGTGATGGCTGGGAAAGTTAGCTAGTGCTAGTATGCACACTCACCT
TCCTTAGCCTCCCAAAGGAGCTCAATTCTTCGTATGTCATCCCCATATCA
TCTTCATCCTCTTGGCTGTGCTCAATACTGTTTTGGCCGCTATCTGAATA
GACGTAAGGAGTGATGCTTGTGTCAAACTTTCGCCATGTCCAATTATGCC
ATAGCCATTGGCATCAAGTGTATTATATGACTAAATGACAGGCTATGACA
GGATGAGCTTGCAAGTAGCAAGTAGCAAGCAGTGCTGTAAAGAAAGGGGG
GCTTACTTTCTTGAGGTCGCAACTCTGCTGTCGGGGGGGCTGCCACAATC
TCGGATAATACATCATAATCATACTCTACCAAGGCGTAGTGATGTATTGA
TATAATCATGATGTTGGGAAATGTTAACAGTTGGTGAGCAAGAGCTGGAG
AGCAAGCATCATGCGGAGTATTCTGTTAGTCTGTGAACCAACCAGTTGCA
GCCCATGAGAGGAGCCTCTTCAGATCCACCTTTGCCAGGGGATAAGGAAG
GGAGGCAGGGGTTATGTTGACTTGGAGTTGGATTTCGGGTTTCAGCTGGC
AACCTACCTTTGAGATTGCCCCTATGGGGTTCAGATCTGCGCTGCTGCAG
TCATACTTGGTCATGTACCCTCTCAGTGCCTAATAAATGTTTAATCTCAC
TCTCAATTATCGATGCCAGAGTGAGTGGCCATAAGCATCTTTACCTCATC
CACATTGGCACTGCCAAGCACCAGTAGGTACCCTTGTGCCATAGTACCTC
TCACCCACGGTAGTAACTGCTCAATGGCCAGGAAGGAAGGGGAAGGTTTG
GAAGTTTGGGTTGGGGGGTTAGAAGGTGGTGAGGTCACAAGTAAGAGTAG
TTGCTGAACGGCTTGCAAACAGCACGTCAGGATGGATGGCAGTGTTTATG
GGTAGAATAGCACATTAGCTCACTGAAGCAGCATGCATGACCTGTGCCAA
CAAGTAGGCCATAAGCATACGAATTCTG
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Coding sequence (CDS) from alignment at C-australica_Contig_1006:3971..8898+

>mRNA_C-australica_Contig_1006.3.1 ID=mRNA_C-australica_Contig_1006.3.1|Name=mRNA_C-australica_Contig_1006.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1344bp|location=Sequence derived from alignment at C-australica_Contig_1006:3971..8898+ (Chrysoparadoxa australica CS_1217)
ATGGGGGGGTCTAAGGCCAGAGAAAGGACATCAAGGGGGGTCTCTAACTC
CAGGGCCCACGCTTCACATCTTGTTAGCCACAGATCTCGATCATCAATCT
CTTCTAGCAAGTTTCCTCCCCCCTCTGGGCCTGCTTCTGTGCGTACGCTT
CATTCTCTAAGGTCTAATAACCAGAGACAAGAAAGGCCACCCTCTAGAGC
AGCAAGCTCTGCCAGGCCCACGACAGCGCCTGGATCATGTATTCCAAACG
CAGCTGCCTCATACAGGCCCAAGACAGCAGATTCAGGATTCTTATCAATG
GCTCGGCTCAGCTCCATTGCGACTAATCCCACTCTTAGTGCCTCCTGCTC
CGCCTCAAATCTTCTCACGGCAGATGAAGATGGCATACCTCTAGGCTTGA
GTGAGATGGATGCTGAGGAACTGGAGGTTTACGTTGATATTATTAAGGAG
AAGCTAGAGGATGAGAAGGCATCAAAAGCAGCCCGGAGGAGACAGAGGAC
ACGTATGTTGGGAGGGGATAACTCCATGCACTCTGGTCCTTCCATGGGCA
GTGAGACTGCGGGACTGCCTAGCGAGCGATGCCACAGTGCAGCTGACTCT
GATGTGAAGAGACTTTCTAAGACACACTGGTTCGAGCGGAGCAGAGTTTC
AAAGATAAACCCTCTGCGGTCTCTGCTGCTGGATCCCACAATCAACAACA
TCCCGCCTGCCAAGACGCATACTGAGCTGGTTGAACGTTTGCGTACTCAG
AACATCCCACATCCCTCCTTTGATGTGGATGGTGATGGAGTGGTCAGCCA
GGAGGACTATGCGATGGCAAAAAGATTTGACCTTGATGGCAATGGCCAAC
TGGATGAAGCTGAGGCGCAGGTTGGAAGAAGGATAATGGCGGAGAGATTC
TTCATGAGGCACCCTGATGACCTGCATCTATATGGAGGATCATACAGTCA
ACAGAGCCTTGCGGATAACATCAATCAGCTGGCCAAGAGCAAGAGCTTCA
AGAAAACCATGTCAGAGCTCCTGGAGAGGGAGCAACACCACCACACAACA
GGATCAGATTCAGTGAAACAGTGCATGACCTTGCAGGACAGCAAGCTGAC
TCGTCACAACTTCTTTGCTGACAAGATGAACACAACAGCTTGGAATGACT
TTACTCGCGATCCCAGGCACCCAACATGGTTGGCATCCAAGCATCACTCT
GGCAGCAGGCACCAGCTGGAATTTATGAGAAAGGCAGAGGCGCGAGAGAG
GGCCCAGGAACTCCTGAATCTCTCTTGGGGCCCAGAGCTAGGCTCATGTC
GACGCATCCAGCTCATCACCAGGACTGATGTTGAGAACTCCTAG
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