mRNA_C-australica_Contig_1006.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1006.1.1
Unique NamemRNA_C-australica_Contig_1006.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1006.1.1 vs. uniprot
Match: D8LLP6_ECTSI (Glutamine cyclotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP6_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 1.180e-54
Identity = 123/284 (43.31%), Postives = 163/284 (57.39%), Query Frame = 3
Query:  240 AGTPLQIGGNQSAKGSAPVLDTKPSQPENAG-IATDQWELLNWYPHDPTSFTQGLSWWNRKLHESTGMHG-RSRIMEVDLETGQMLREHRLKQEYFGEGMAIINDEAHMLTWQSKVGFRFNPLTLEPLGEFTFTTVTGQGWGITSDGDSAIVSDGGSTLTFFDPDTYAVRRQVQVTL-NGTPIAHLNELEYWVGKDGKGYVLANVWFKSDIIKIDPDTGIIVDVIRVKHLA*CRYSPCRFN**IHKRTAQKDLLSLCFPCFPQFDALYPKEQQQKELTSREAVL 1082
            AGT  +  G+Q    ++  L  +P      G +A  ++ LL  YPHD  +FTQGL +    L+ESTG++G +S + +VD ETG++L+  +L  +YFGEGM I +D+ H LTW+SKVGF ++  T EP  +F F T+TGQGWGIT+DG+S IVSDG   L F+DP T    R+V+V L +G P+  LNELE       KGYV ANVWF  ++ KIDP TG +VD                +N                      F  LYPK  Q+KELTSREAVL
Sbjct:  147 AGTSARQDGSQET--ASRNLSRRPELKTRGGQLAFARFSLLAEYPHDQHAFTQGLCYNGGFLYESTGLYGGKSTVRKVDTETGKVLQSVKLDDKYFGEGMVITDDKIHSLTWRSKVGFSWDLETFEPQEQFHFNTMTGQGWGITTDGESLIVSDGSEFLFFWDPATMKETRRVEVKLKDGRPLKKLNELEVV-----KGYVFANVWFDDNLYKIDPATGEVVDA---------------YN----------------------FSELYPKALQKKELTSREAVL 386          
BLAST of mRNA_C-australica_Contig_1006.1.1 vs. uniprot
Match: S9R2M6_9DELT (Glutamine cyclotransferase n=2 Tax=Cystobacter fuscus TaxID=43 RepID=S9R2M6_9DELT)

HSP 1 Score: 185 bits (470), Expect = 2.100e-53
Identity = 98/193 (50.78%), Postives = 133/193 (68.91%), Query Frame = 3
Query:  309 PSQPENAGIATDQWELLNWYPHDPTSFTQGLSWWNRKLHESTGMHGRSRIMEVDLETGQMLREHRLKQEYFGEGMAIINDEAHMLTWQSKVGFRFNPLTLEPLGEFTFTTVTGQGWGITSDGDSAIVSDGGSTLTFFDPDTYAVRRQVQVTLNGTPIAHLNELEYWVGKDGKGYVLANVWFKSDIIKIDPDTG 887
            PS P NA +  + +E++  +PHDP +FTQGL +   KL+E TG+ GRS + EV+LETG +LR+ RL+++YFGEG+AI  +  + LTW+S+ GF ++  TLE +G FT+ T   +GWG+T DG+S I+SDG STL F DPDT+AVRR V+V   G  I+ LNELEY      +G V ANVW    I +IDP TG
Sbjct:    4 PSPPANAPV--EGFEIVRSWPHDPFAFTQGLVFRQGKLYEGTGLQGRSSLREVELETGVVLRQSRLERQYFGEGIAIRGNRLYQLTWRSQEGFIYDAATLERVGHFTYPT---EGWGLTEDGESLIMSDGSSTLRFLDPDTFAVRRTVKVQDAGREISQLNELEYV-----RGEVYANVWMTDLIARIDPATG 186          
BLAST of mRNA_C-australica_Contig_1006.1.1 vs. uniprot
Match: A0A1L9AZF0_9DELT (Glutamine cyclotransferase n=1 Tax=Cystobacter ferrugineus TaxID=83449 RepID=A0A1L9AZF0_9DELT)

HSP 1 Score: 174 bits (441), Expect = 7.910e-49
Identity = 92/190 (48.42%), Postives = 129/190 (67.89%), Query Frame = 3
Query:  318 PENAGIATDQWELLNWYPHDPTSFTQGLSWWNRKLHESTGMHGRSRIMEVDLETGQMLREHRLKQEYFGEGMAIINDEAHMLTWQSKVGFRFNPLTLEPLGEFTFTTVTGQGWGITSDGDSAIVSDGGSTLTFFDPDTYAVRRQVQVTLNGTPIAHLNELEYWVGKDGKGYVLANVWFKSDIIKIDPDTG 887
            PE   +A   +E++  +PHDP++FTQGL +   +L+E TG  GRS + EV+LETG +LR+ RL+ +YFGEG+A+  +  + LTW+S+ GF ++  T E +G FT++T   +GWG+T DG+S I+SDG +TL F DPDT+AVRR V+V   G  I+ LNELEY      +G V ANVW    I +IDP TG
Sbjct:   27 PERTPVAG--FEIVQSWPHDPSAFTQGLVFRQGRLYEGTGQLGRSSLREVELETGVVLRQIRLEPQYFGEGIALRGNRLYQLTWRSQEGFVYDATTFERVGRFTYST---EGWGLTEDGESLIMSDGTNTLRFLDPDTFAVRRTVKVLDAGREISQLNELEYV-----RGEVYANVWMTDLIARIDPATG 206          
BLAST of mRNA_C-australica_Contig_1006.1.1 vs. uniprot
Match: UPI001EEFC627 (glutaminyl-peptide cyclotransferase n=2 Tax=Archangium violaceum TaxID=83451 RepID=UPI001EEFC627)

HSP 1 Score: 174 bits (441), Expect = 8.380e-49
Identity = 92/222 (41.44%), Postives = 142/222 (63.96%), Query Frame = 3
Query:  330 GIATDQWELLNWYPHDPTSFTQGLSWWNRKLHESTGMHGRSRIMEVDLETGQMLREHRLKQEYFGEGMAIINDEAHMLTWQSKVGFRFNPLTLEPLGEFTFTTVTGQGWGITSDGDSAIVSDGGSTLTFFDPDTYAVRRQVQVTLNGTPIAHLNELEYWVGKDGKGYVLANVWFKSDIIKIDPDTGIIVDVIRVKHLA*CRYSPCRFN**IHKRTAQKDLLS 995
            G+    +E++  +PHDP +FTQGL + + KL+E TG +G+S + EV+LETG +LR+  L+++YFGEG+A +    + LTW+S+VGF ++  T + +G F ++T   +GWG+T+DG S I+SDG +TL F DP T+AV+R V VT  G  ++ LNELEY      +G V ANVW    I +IDP +G +   + +K L     +P        +RT ++D+L+
Sbjct:   31 GVPVSGFEIVQSWPHDPRAFTQGLVYRDGKLYEGTGGNGQSSLREVELETGAVLRKRDLERQYFGEGIAFLGGRLYQLTWRSRVGFIYDAATFQQVGRFDYST---EGWGLTTDGTSLILSDGTATLRFLDPRTFAVQRTVTVTDEGREVSRLNELEYI-----RGEVYANVWMTDRIARIDPASGRVTGWLDLKGLL----AP-------EERTGREDVLN 233          
BLAST of mRNA_C-australica_Contig_1006.1.1 vs. uniprot
Match: UPI001EF4EB74 (glutaminyl-peptide cyclotransferase n=2 Tax=Archangium violaceum TaxID=83451 RepID=UPI001EF4EB74)

HSP 1 Score: 172 bits (435), Expect = 6.520e-48
Identity = 88/183 (48.09%), Postives = 122/183 (66.67%), Query Frame = 3
Query:  339 TDQWELLNWYPHDPTSFTQGLSWWNRKLHESTGMHGRSRIMEVDLETGQMLREHRLKQEYFGEGMAIINDEAHMLTWQSKVGFRFNPLTLEPLGEFTFTTVTGQGWGITSDGDSAIVSDGGSTLTFFDPDTYAVRRQVQVTLNGTPIAHLNELEYWVGKDGKGYVLANVWFKSDIIKIDPDTG 887
            T  +++++ +PHDP +FTQGL +   +L+ESTG+HG S + EV+LETG++LR H L  E+FGEG+A++    + LTWQS VGF ++  T + +G F+++T    GWG+T DG S I+SDG STL F DP T+ VRR V VT     +  LNELEY  G+     V ANVW +  I +IDP TG
Sbjct:   34 TSGFQVVHSWPHDPEAFTQGLVYREGRLYESTGIHGESEVREVELETGRVLRGHALAWEHFGEGLALLGGRLYQLTWQSHVGFIYDAETFQEVGRFSYST---DGWGLTDDGSSLILSDGTSTLRFLDPATFQVRRTVTVTDGSAEVWQLNELEYVNGE-----VYANVWKRDVIARIDPATG 208          
BLAST of mRNA_C-australica_Contig_1006.1.1 vs. uniprot
Match: A0A084SZW1_9DELT (Glutamine cyclotransferase n=4 Tax=Archangium TaxID=47 RepID=A0A084SZW1_9DELT)

HSP 1 Score: 172 bits (435), Expect = 7.100e-48
Identity = 87/207 (42.03%), Postives = 133/207 (64.25%), Query Frame = 3
Query:  300 DTKPSQPENAGIATDQWELLNWYPHDPTSFTQGLSWWNRKLHESTGMHGRSRIMEVDLETGQMLREHRLKQEYFGEGMAIINDEAHMLTWQSKVGFRFNPLTLEPLGEFTFTTVTGQGWGITSDGDSAIVSDGGSTLTFFDPDTYAVRRQVQVTLNGTPIAHLNELEYWVGKDGKGYVLANVWFKSDIIKIDPDTGIIVDVIRVKHL 920
            +  P+    A      ++++  +PHDP ++TQGL + + +L E TG++G+S + EV+LETG +LR H L+++YFGEG+ +     + LTW+S VGF ++  TL+ +G F + T   +GWG+T DG S I+SDG STL F DP T A++R ++VT NG  I+ LNELE+      KG + ANV+ ++DI +IDP TG +   I +  L
Sbjct:   24 ERSPASTPPAATPVFGFDVVQSWPHDPNAYTQGLVYRDGRLFEGTGLNGQSSLREVELETGAVLRRHALERQYFGEGITLFKGRLYQLTWRSHVGFIYDATTLQQVGRFEYPT---EGWGLTDDGTSLIMSDGSSTLRFLDPATLALQRSIRVTDNGREISQLNELEFI-----KGEIYANVYMENDIARIDPATGKVTGWISLSGL 222          
BLAST of mRNA_C-australica_Contig_1006.1.1 vs. uniprot
Match: A0A0G2ZYA3_9DELT (Glutamine cyclotransferase n=2 Tax=Archangium gephyra TaxID=48 RepID=A0A0G2ZYA3_9DELT)

HSP 1 Score: 172 bits (435), Expect = 7.310e-48
Identity = 88/204 (43.14%), Postives = 133/204 (65.20%), Query Frame = 3
Query:  309 PSQPENAGIATDQWELLNWYPHDPTSFTQGLSWWNRKLHESTGMHGRSRIMEVDLETGQMLREHRLKQEYFGEGMAIINDEAHMLTWQSKVGFRFNPLTLEPLGEFTFTTVTGQGWGITSDGDSAIVSDGGSTLTFFDPDTYAVRRQVQVTLNGTPIAHLNELEYWVGKDGKGYVLANVWFKSDIIKIDPDTGIIVDVIRVKHL 920
            P+    A      +E++  +PHDP ++TQGL + + +L+E TG+HG+S + EV+LETG +LR H L++++FGEG+A+     + LTW+S+VGF ++  T + +G F + T   +GWG+T DG S I+SDG STL F DP T AV+R ++VT  G  I+ LNELE+      KG + ANV+ ++DI +IDP TG +   I +  L
Sbjct:   28 PAPTPPASTPVSGFEVVQSWPHDPNAYTQGLVYRDGRLYEGTGLHGQSSLREVELETGAVLRRHDLERQHFGEGIALFKGRLYQLTWRSQVGFIYDAATFQQVGRFAYPT---EGWGLTDDGTSLIMSDGSSTLRFLDPTTLAVQRTLRVTDAGREISLLNELEFI-----KGELYANVYLQNDIARIDPATGKVTGWINLSGL 223          
BLAST of mRNA_C-australica_Contig_1006.1.1 vs. uniprot
Match: UPI001CCDABA0 (glutaminyl-peptide cyclotransferase n=1 Tax=Hyalangium sp. H56D21 TaxID=2861190 RepID=UPI001CCDABA0)

HSP 1 Score: 172 bits (435), Expect = 8.410e-48
Identity = 93/213 (43.66%), Postives = 133/213 (62.44%), Query Frame = 3
Query:  249 PLQIGGNQSAKGSAPVLDTKPSQPENAGIATDQWELLNWYPHDPTSFTQGLSWWNRKLHESTGMHGRSRIMEVDLETGQMLREHRLKQEYFGEGMAIINDEAHMLTWQSKVGFRFNPLTLEPLGEFTFTTVTGQGWGITSDGDSAIVSDGGSTLTFFDPDTYAVRRQVQVTLNGTPIAHLNELEYWVGKDGKGYVLANVWFKSDIIKIDPDTG 887
            P+ + G     G A ++    +   + G  T  +E++  +PHDP +FT+GL +   +L+ESTG++G S + EV LETGQ+LR   L+Q+YFGEG+A+   +  MLTW+S VGF ++  T +P G+F+F    G+GWG+T DG S I+S+G STL F DP T  V+R + VT  G  ++ LNELEY      KG + ANVW    I +IDP TG
Sbjct:   13 PVFLRGLMPLLGLALLVSCSSAHGASQGAPTQGFEVVQSWPHDPRAFTEGLVYREGRLYESTGLNGSSSMREVALETGQVLRSLALEQKYFGEGIALFGGKLFMLTWRSHVGFIYDAATFQPTGQFSFK---GEGWGLTDDGSSLIMSNGSSTLRFLDPATLKVQRSITVTDAGREVSLLNELEYV-----KGEIYANVWRTDLIARIDPATG 217          
BLAST of mRNA_C-australica_Contig_1006.1.1 vs. uniprot
Match: A0A3D4VE04_9BACT (Glutamine cyclotransferase n=2 Tax=Gemmatimonas aurantiaca TaxID=173480 RepID=A0A3D4VE04_9BACT)

HSP 1 Score: 171 bits (433), Expect = 1.530e-47
Identity = 86/194 (44.33%), Postives = 130/194 (67.01%), Query Frame = 3
Query:  339 TDQWELLNWYPHDPTSFTQGLSWWNRKLHESTGMHGRSRIMEVDLETGQMLREHRLKQEYFGEGMAIINDEAHMLTWQSKVGFRFNPLTLEPLGEFTFTTVTGQGWGITSDGDSAIVSDGGSTLTFFDPDTYAVRRQVQVTLNGTPIAHLNELEYWVGKDGKGYVLANVWFKSDIIKIDPDTGIIVDVIRVKHL 920
            T  ++++N YPHDP +FTQGL W + +L ESTG  G S + EVDL +G+++R+  L+Q +FGEGM I+ D+ + LTWQS   F ++  T    G F++    G+GWG+T+DG S I+S+G +++ + DP+T+AV + + VT  GTP+A +NELE WV    KG + ANVW    I +IDP+TG ++  I + +L
Sbjct:   40 TYTFDVVNVYPHDPAAFTQGLQWHDNRLFESTGQVGTSGLREVDLSSGRVVRQQPLEQPHFGEGMVILGDKLYQLTWQSGKAFTYDWKTFTRTGTFSYD---GEGWGLTTDGTSLIMSNGSASIVWRDPNTFAVTKTLSVTDRGTPVAAINELE-WV----KGEIWANVWQVDSIARIDPNTGTVIGWIDLSNL 225          
BLAST of mRNA_C-australica_Contig_1006.1.1 vs. uniprot
Match: A0A2N3DA68_9PROT (Glutamine cyclotransferase n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-16 TaxID=2013662 RepID=A0A2N3DA68_9PROT)

HSP 1 Score: 170 bits (431), Expect = 2.950e-47
Identity = 104/229 (45.41%), Postives = 135/229 (58.95%), Query Frame = 3
Query:  225 GALCFAGTPL------QIGGNQSAKGSAPVLDTKPSQPENAGIATDQWELLNWYPHDPTSFTQGLSWWNRKLHESTGMHGRSRIMEVDLETGQMLREHRLKQEYFGEGMAIINDEAHMLTWQSKVGFRFNPLTLEPLGEFTFTTVTGQGWGITSDGDSAIVSDGGSTLTFFDPDTYAVRRQVQVTLNGTPIAHLNELEYWVGKDGKGYVLANVWFKSDIIKIDPDTGII 893
            GA  F  TPL      Q+   QSA   AP    +P++         Q E+   +PHDP +FTQGL + + +L ESTG HG S I EVDL++G++ RE RL   YFGEG     D    LTW+   GFR++  T   LGEFT+    G+GWG+T DG+S I+SDG + L F DP+T A RR++ VT  G PI  LNELEY      +G VLANVW  + I +IDP +G+I
Sbjct:    3 GATPFLSTPLTARPTAQVAAPQSA---AP----RPTESPRPVAPVVQAEVCATFPHDPGAFTQGLFFHDGRLFESTGQHGESAIREVDLQSGKVKREVRLPARYFGEGSTSWGDMIVSLTWRHGKGFRWDRETFRLLGEFTYP---GEGWGLTQDGESLILSDGTAQLRFLDPETMAERRRITVTWQGRPIRQLNELEYV-----RGEVLANVWHTNLIARIDPKSGVI 216          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1006.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLP6_ECTSI1.180e-5443.31Glutamine cyclotransferase n=2 Tax=Ectocarpus TaxI... [more]
S9R2M6_9DELT2.100e-5350.78Glutamine cyclotransferase n=2 Tax=Cystobacter fus... [more]
A0A1L9AZF0_9DELT7.910e-4948.42Glutamine cyclotransferase n=1 Tax=Cystobacter fer... [more]
UPI001EEFC6278.380e-4941.44glutaminyl-peptide cyclotransferase n=2 Tax=Archan... [more]
UPI001EF4EB746.520e-4848.09glutaminyl-peptide cyclotransferase n=2 Tax=Archan... [more]
A0A084SZW1_9DELT7.100e-4842.03Glutamine cyclotransferase n=4 Tax=Archangium TaxI... [more]
A0A0G2ZYA3_9DELT7.310e-4843.14Glutamine cyclotransferase n=2 Tax=Archangium geph... [more]
UPI001CCDABA08.410e-4843.66glutaminyl-peptide cyclotransferase n=1 Tax=Hyalan... [more]
A0A3D4VE04_9BACT1.530e-4744.33Glutamine cyclotransferase n=2 Tax=Gemmatimonas au... [more]
A0A2N3DA68_9PROT2.950e-4745.41Glutamine cyclotransferase n=1 Tax=Alphaproteobact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1006contigC-australica_Contig_1006:821..3891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1242864.D187_006563
PFAMsGlu_cyclase_2
Model size1082
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categorysignal anchor
Exons13
Evalue2.86e-55
EggNOG OGsCOG3823@1|root,COG3823@2|Bacteria,1R9YU@1224|Proteobacteria,42RYU@68525|delta/epsilon subdivisions,2WNVI@28221|Deltaproteobacteria
Ec32 ortholog descriptionGlutamine cyclotransferase
Ec32 orthologEc-04_004960.1
DescriptionPFAM Glutamine cyclotransferase
Cds size834
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586739.775666-UTR-C-australica_Contig_1006:820..8461682586739.775666-UTR-C-australica_Contig_1006:820..846Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1006 821..846 -
1682586739.7861214-UTR-C-australica_Contig_1006:962..10921682586739.7861214-UTR-C-australica_Contig_1006:962..1092Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1006 963..1092 -
1682586739.9194846-UTR-C-australica_Contig_1006:3691..36951682586739.9194846-UTR-C-australica_Contig_1006:3691..3695Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1006 3692..3695 -
1682586739.9309716-UTR-C-australica_Contig_1006:3803..38911682586739.9309716-UTR-C-australica_Contig_1006:3803..3891Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1006 3804..3891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586739.8012156-CDS-C-australica_Contig_1006:1092..11941682586739.8012156-CDS-C-australica_Contig_1006:1092..1194Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 1093..1194 -
1682586739.8116825-CDS-C-australica_Contig_1006:1427..14711682586739.8116825-CDS-C-australica_Contig_1006:1427..1471Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 1428..1471 -
1682586739.8207562-CDS-C-australica_Contig_1006:1578..16031682586739.8207562-CDS-C-australica_Contig_1006:1578..1603Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 1579..1603 -
1682586739.8291953-CDS-C-australica_Contig_1006:1735..18401682586739.8291953-CDS-C-australica_Contig_1006:1735..1840Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 1736..1840 -
1682586739.8373415-CDS-C-australica_Contig_1006:2077..21761682586739.8373415-CDS-C-australica_Contig_1006:2077..2176Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 2078..2176 -
1682586739.847095-CDS-C-australica_Contig_1006:2347..24101682586739.847095-CDS-C-australica_Contig_1006:2347..2410Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 2348..2410 -
1682586739.8661187-CDS-C-australica_Contig_1006:2598..26511682586739.8661187-CDS-C-australica_Contig_1006:2598..2651Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 2599..2651 -
1682586739.8744597-CDS-C-australica_Contig_1006:2801..28401682586739.8744597-CDS-C-australica_Contig_1006:2801..2840Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 2802..2840 -
1682586739.8825994-CDS-C-australica_Contig_1006:2932..30211682586739.8825994-CDS-C-australica_Contig_1006:2932..3021Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 2933..3021 -
1682586739.8915277-CDS-C-australica_Contig_1006:3406..35901682586739.8915277-CDS-C-australica_Contig_1006:3406..3590Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 3407..3590 -
1682586739.9053922-CDS-C-australica_Contig_1006:3660..36911682586739.9053922-CDS-C-australica_Contig_1006:3660..3691Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 3661..3691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1006.1.1prot_C-australica_Contig_1006.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1006 1093..3691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1006.1.1

>prot_C-australica_Contig_1006.1.1 ID=prot_C-australica_Contig_1006.1.1|Name=mRNA_C-australica_Contig_1006.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=278bp
MSRRRVRERKASKPSYTLRRPKMVPQTKRRILGASLVIGLGLVGGALCFA
GTPLQIGGNQSAKGSAPVLDTKPSQPENAGIATDQWELLNWYPHDPTSFT
QGLSWWNRKLHESTGMHGRSRIMEVDLETGQMLREHRLKQEYFGEGMAII
NDEAHMLTWQSKVGFRFNPLTLEPLGEFTFTTVTGQGWGITSDGDSAIVS
DGGSTLTFFDPDTYAVRRQVQVTLNGTPIAHLNELEYWVGKDGKGYVLAN
VWFKSDIIKIDPDTGIIVDVIRVKHLA*
back to top

mRNA from alignment at C-australica_Contig_1006:821..3891-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1006.1.1 ID=mRNA_C-australica_Contig_1006.1.1|Name=mRNA_C-australica_Contig_1006.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3071bp|location=Sequence derived from alignment at C-australica_Contig_1006:821..3891- (Chrysoparadoxa australica CS_1217)
TACCACGCTACAGTACGGTACTGGTATCATAGTGCGGTACTACAGTAGAG GACCGGTAGAAAGGAGGTGTTGAATTCCAATGAGCGTGGTAGGTCTACCC CTCAATCCTTGGCAGTCTGGCATTACCGACGCCTGGCATTACCCTACCCG TCTAGCCTCGCCTCTCCCAACATAAGTATTGTACTACCTTCCTCAGGCCA ATGTCGCGTAGGCGAGTTCGAGAGAGAAAAGGTTAGAACCTTTAGAACTT GCCTAACCCTCCTTATGCAACTCATTTATGCACCTCCTTCCTCTCTTTCA GCCAGTAAGCCCTCCTACACACTGCGGCGGCCAAAGATGGTCCCACAGAC CAAAAGAAGAATACTGGGAGCATCTCTAGTAATTGGACTAGGTTTGGTAG GGGGGGCGTTATGCTTTGCAGGAACTCCTCTACAGATTGGGGGTAACCAA TCAGCTAAGGGAAGCGCCCCAGTACTTGATACAAAGTGCGTACCCCCCCA ACTGAGCAGTCCATCTAAACCAGCACCCGCTCTGCTTCATTGCACCCTAC CTTAACCTGATACCATCTTCTCCTACTCCACCCGAAGCTTTAGTTTAATC CATCTTTTTGCACGAGGCCTGACTTCCTTTTGTGTCATGACATGAAGTTA ATACCATCATGAAAGGATTTGCTCCCCCTTGGCAAAGCATCTCATCTTCT ATTTCACACAGCTCACTCATGCTCACTCTTGGTGTGATTTGTTTACCTAA ATTGGTTACTTACAGGCCCACACACTCACACAACCACACTGACATATAAT GAGGGACAGACAGTTGTGTGCATACTACTCTTGCATACAGTTAGCTGACG CTGTTGCGTCCATTTGCTAGGCCAAGTCAGCCGGAAAATGCTGGCATAGC CACAGATCAGTGGGAGCTCCTGAATTGGTACCCGCATGACCCCACATCCT TCACTCAAGGTAATGATTGCAGTGCCTTAAACGGTTGAAAAAAGGCCATG GCTTTCCTGACCAACTTTCAACTTTTCCCCTTCCCTTTCCCGCTGTGCCA GGCTTAAGTTGGTGGAATAGGAAGCTACACGAGTCAACGGGTTAGTAAAT CTGATAGTGAATTCTAGTTGTATCCTCCAACCAGACCAAGGGGAATGATT CATGCAGCTCAGCCTGACCCGAATAGGCTCAATTCAAGCCTGACCATGCC CTGCCCTGGCACATTTCCTAAACTTAAAACCTACCTTAAGGCATGCATGG CAGGAGTCGCATAATGGAAGTTGACCTGGAGACTGGCCAAATGGTAAGTG AAGCCAAGCCTCCTTTAGGGAGAATTAAATATTCTTTCCCATTCACGTGA ACTGATAACCCGTGTAAGGGCTGGTTGACGGTTGCTTGGCCCACACAGTC TCCTTTTCTGTTGCTGAGCCCTTGTATCCCACATCATGGTTCCTCTTGGT CACGCAAACCTCTCCAACTGATAACTCATAGCTGCGGGAGCACCGGCTAA AACAAGAGTACTTTGGGGAGGGCATGGCTATCATCAATGATGAGGTGTCC CAAAGTATTCACATGTTGTCAGTAGTCTGACAGAGCTGTGGGTTAGACAA CGCTCTTATTTCTGACTCTAAGCATGGTTCACATTCTTAATATGATGCAT CCTTTGTTTTGAGTATCCAACTGTGTATTTCCTTGCCATGCCTTTGACCA AGTATTTGCCTTTAGGCTCACATGCTGACTTGGCAAAGCAAGGTGGGGTT CCGTTTCAACCCGCTGACGTTAGAGCCATTGGGAGAGTTTACATTTACTA CGGTGACAGGGCAGGTTTGAAGTGCTACCCCCTTAACTTATGACTTACCA GCCTGAGCTAAGCTTGCCTCATATCTGTCCCACCCTTGCTGTTTTTCTTA TTTAGGTTGATCTATAGATTGCTAATAGTTTGCTCATTTTTACCTTTACT GCAGAATCTTTTTCCACCTGTTCCTCAATCCCTCACGCGGGCTTACCAAG CGAATCATCCAGCGAGCCCTAGGATGCTCACACCCATCTCGAAATCTCCA GGGCTGGGGCATAACATCTGATGGTGACTCTGCTATTGTCAGCGATGGTG GCAGCACCTTAACATTCTTTGACCCGGACACTTATGCTGTACGCCGGCAA GTGCAGGTAAGAAGCGAGGCGCCTTTCACTGCAGTCCAATCCCTTTACTT TTCACCGTGCAGCTTCTTTGCTCACCATTGATTAATGCATAGAACGTCTT ACCCTTTCTTTCTTCGTGTAATTCTAATTCTATTCTAGGTCACACTCAAC GGCACTCCCATAGGTAACAGGCACCAGCCTTGGTTGGACTCTCTCCCTTT CCCAAGCTCTATCCTTAACCCTCATCCTAACCCTTATTCTAAACCTATCT CATGTACATGCGCTCAACAGCCCATCTTAATGAGCTGGAGTACTGGGTCG GGAAAGATGGGAAAGTATGATTATGATTATTTTTATTATTCACTACGGTC TCTTTTTGCTTAGCTCTTTCCCGTCTCATATCCTCATGGTTTTGCTATTT TGCTCTCTTACTCTTCCACAGACTTGTCCCCAGTCCCCATTCCCCACTCC ACCATTACTCATGTTACAATGCCTCTGCACTCTTGTGCTCATTCCCTCCC TAACTACTCACGTATTCACACATTCACTAACTCCACTCTCATCCTAGGGC TATGTGCTGGCAAATGTATGGTTCAAGAGTGATATTATCAAGATTGACCC AGACACTGGGATCATTGTCGATGTGATTAGGGTAAAACACTTGGCCTGAT GCAGATACTCACCTTGCCGATTCAATTAGTGAATACATAAGAGAACAGCC CAGAAAGATTTACTCTCACTATGCTTTCCATGTTTCCCTCAGTTTGATGC ACTATACCCTAAAGAACAGCAGCAGAAAGGTTAGGCTACATCATGCACCT CTAGTACGCCTGGCCAGCTCTTATATCCAATGTGCTTGATTGCTATCATG GATATCAGCCCGTTCCCTGACCTTTGCTCATGCAACCTTTGACAGAATTG ACGTCAAGAGAAGCTGTTCTC
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_1006:821..3891-

>mRNA_C-australica_Contig_1006.1.1 ID=mRNA_C-australica_Contig_1006.1.1|Name=mRNA_C-australica_Contig_1006.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=834bp|location=Sequence derived from alignment at C-australica_Contig_1006:821..3891- (Chrysoparadoxa australica CS_1217)
ATGTCGCGTAGGCGAGTTCGAGAGAGAAAAGCCAGTAAGCCCTCCTACAC
ACTGCGGCGGCCAAAGATGGTCCCACAGACCAAAAGAAGAATACTGGGAG
CATCTCTAGTAATTGGACTAGGTTTGGTAGGGGGGGCGTTATGCTTTGCA
GGAACTCCTCTACAGATTGGGGGTAACCAATCAGCTAAGGGAAGCGCCCC
AGTACTTGATACAAAGCCAAGTCAGCCGGAAAATGCTGGCATAGCCACAG
ATCAGTGGGAGCTCCTGAATTGGTACCCGCATGACCCCACATCCTTCACT
CAAGGCTTAAGTTGGTGGAATAGGAAGCTACACGAGTCAACGGGCATGCA
TGGCAGGAGTCGCATAATGGAAGTTGACCTGGAGACTGGCCAAATGCTGC
GGGAGCACCGGCTAAAACAAGAGTACTTTGGGGAGGGCATGGCTATCATC
AATGATGAGGCTCACATGCTGACTTGGCAAAGCAAGGTGGGGTTCCGTTT
CAACCCGCTGACGTTAGAGCCATTGGGAGAGTTTACATTTACTACGGTGA
CAGGGCAGGGCTGGGGCATAACATCTGATGGTGACTCTGCTATTGTCAGC
GATGGTGGCAGCACCTTAACATTCTTTGACCCGGACACTTATGCTGTACG
CCGGCAAGTGCAGGTCACACTCAACGGCACTCCCATAGCCCATCTTAATG
AGCTGGAGTACTGGGTCGGGAAAGATGGGAAAGGCTATGTGCTGGCAAAT
GTATGGTTCAAGAGTGATATTATCAAGATTGACCCAGACACTGGGATCAT
TGTCGATGTGATTAGGGTAAAACACTTGGCCTGA
back to top