mRNA_C-australica_Contig_10051.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_10051.1.1 vs. uniprot
Match: A0A0K1U8H1_9GAMM (Membrane protein n=31 Tax=Bacteria TaxID=2 RepID=A0A0K1U8H1_9GAMM) HSP 1 Score: 403 bits (1036), Expect = 1.870e-140 Identity = 213/215 (99.07%), Postives = 213/215 (99.07%), Query Frame = 1 Query: 1 PMSIERVEGSVSPGYRRRFLAGLKPLVAVIAGLLAGYYLLPDMPMAEQLATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTLRSLVAGALLIPWLGLPWHDALAVASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREIVALAIIPLLIANRPAMAIGYGGATAMDFTLPVIRSSGGLTCVPVAIASGFLLSFLSPVLMGVFLSLG 645
PMSIERVEGSVSPGYRR FLAGLKPLVAVIAGLLAGYYLLPDMPMAEQLATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTL SLVAGALLIPWLGLPWHDALAVASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREIVALAIIPLLIANRPAMAIGYGGATAMDFTLPVIRSSGGLTCVPVAIASGFLLSFLSPVLMGVFLSLG
Sbjct: 88 PMSIERVEGSVSPGYRRLFLAGLKPLVAVIAGLLAGYYLLPDMPMAEQLATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTLSSLVAGALLIPWLGLPWHDALAVASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREIVALAIIPLLIANRPAMAIGYGGATAMDFTLPVIRSSGGLTCVPVAIASGFLLSFLSPVLMGVFLSLG 302
BLAST of mRNA_C-australica_Contig_10051.1.1 vs. uniprot
Match: A0A0J7M711_9GAMM (Putative membrane protein YbjE, DUF340 family n=1 Tax=Marinobacter subterrani TaxID=1658765 RepID=A0A0J7M711_9GAMM) HSP 1 Score: 375 bits (964), Expect = 1.710e-129 Identity = 192/215 (89.30%), Postives = 205/215 (95.35%), Query Frame = 1 Query: 1 PMSIERVEGSVSPGYRRRFLAGLKPLVAVIAGLLAGYYLLPDMPMAEQLATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTLRSLVAGALLIPWLGLPWHDALAVASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREIVALAIIPLLIANRPAMAIGYGGATAMDFTLPVIRSSGGLTCVPVAIASGFLLSFLSPVLMGVFLSLG 645
P+ +ER EG VSPGYRR FLAGLKPL+AV+AGLLAGYYLLPDMPMAEQ+ATW+LMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIAL+LTL SLVAG L+PWLGLPWHD LA+ASGFGWYSLSGIVIG+ALGPAWGGVAFLNDVLREIVALAIIP+LI+ RPAMAIGYGGATAMDFTLPVIRSSGGL CVPVAIASGFLLSFLSPVLMG+FLSLG
Sbjct: 88 PLELERPEGDVSPGYRRLFLAGLKPLLAVVAGLLAGYYLLPDMPMAEQVATWALMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALSLTLSSLVAGVALMPWLGLPWHDTLALASGFGWYSLSGIVIGDALGPAWGGVAFLNDVLREIVALAIIPVLISGRPAMAIGYGGATAMDFTLPVIRSSGGLACVPVAIASGFLLSFLSPVLMGIFLSLG 302
BLAST of mRNA_C-australica_Contig_10051.1.1 vs. uniprot
Match: A0A0P7X913_9GAMM (Putative membrane protein n=5 Tax=Marinobacteraceae TaxID=2887365 RepID=A0A0P7X913_9GAMM) HSP 1 Score: 369 bits (948), Expect = 4.640e-127 Identity = 189/215 (87.91%), Postives = 202/215 (93.95%), Query Frame = 1 Query: 1 PMSIERVEGSVSPGYRRRFLAGLKPLVAVIAGLLAGYYLLPDMPMAEQLATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTLRSLVAGALLIPWLGLPWHDALAVASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREIVALAIIPLLIANRPAMAIGYGGATAMDFTLPVIRSSGGLTCVPVAIASGFLLSFLSPVLMGVFLSLG 645
PM++ER EG V GYRR FLAGLKPLVAV+ GLLAG+YLLPDMPMAEQ+ATW+LMLLLF IG+QLRNAGLSLRKLLMNRQGLGIALALTL SLVAG +LIPWLGLPWHD LA+ASGFGWYSLSGIVIG+ALGPAWGGVAFLNDV+REI+ALAIIPLLI+ RPAMAIGYGGATAMDFTLPVIRSSGGL CVPVAIASGFLLSFLSPVLM VFLSLG
Sbjct: 88 PMTVERPEGDVGTGYRRLFLAGLKPLVAVVVGLLAGFYLLPDMPMAEQVATWALMLLLFFIGIQLRNAGLSLRKLLMNRQGLGIALALTLSSLVAGIVLIPWLGLPWHDVLAMASGFGWYSLSGIVIGDALGPAWGGVAFLNDVIREIIALAIIPLLISTRPAMAIGYGGATAMDFTLPVIRSSGGLACVPVAIASGFLLSFLSPVLMAVFLSLG 302
BLAST of mRNA_C-australica_Contig_10051.1.1 vs. uniprot
Match: A0A1I6GZL2_9GAMM (Uncharacterized membrane protein YbjE, DUF340 family n=1 Tax=Marinobacter gudaonensis TaxID=375760 RepID=A0A1I6GZL2_9GAMM) HSP 1 Score: 363 bits (932), Expect = 1.260e-124 Identity = 188/215 (87.44%), Postives = 200/215 (93.02%), Query Frame = 1 Query: 1 PMSIERVEGSVSPGYRRRFLAGLKPLVAVIAGLLAGYYLLPDMPMAEQLATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTLRSLVAGALLIPWLGLPWHDALAVASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREIVALAIIPLLIANRPAMAIGYGGATAMDFTLPVIRSSGGLTCVPVAIASGFLLSFLSPVLMGVFLSLG 645
P+S+E E +V+ GYRR FLAGLKPL+AV+ GLLAGYYLLP PMAEQLATWSLM+LLFLIG+QLRNAGLSLRKLLMNRQGLGIALAL SLVAGA L+PWLGLPWHDALAVASGFGWYSLSG+VIGEALGPAWGGVAFLNDVLREIVALAIIP+LIA RPAMAIGYGGATAMDFTLPVIRSSGGL CVPVAIASGFLLSFLSPV+M VFLSLG
Sbjct: 88 PLSLEPAEDTVNHGYRRLFLAGLKPLLAVVVGLLAGYYLLPVFPMAEQLATWSLMVLLFLIGVQLRNAGLSLRKLLMNRQGLGIALALAASSLVAGAALVPWLGLPWHDALAVASGFGWYSLSGVVIGEALGPAWGGVAFLNDVLREIVALAIIPMLIARRPAMAIGYGGATAMDFTLPVIRSSGGLACVPVAIASGFLLSFLSPVMMAVFLSLG 302
BLAST of mRNA_C-australica_Contig_10051.1.1 vs. uniprot
Match: UPI001C5EA2D5 (LysO family transporter n=3 Tax=unclassified Marinobacter TaxID=83889 RepID=UPI001C5EA2D5) HSP 1 Score: 353 bits (905), Expect = 1.620e-120 Identity = 184/215 (85.58%), Postives = 198/215 (92.09%), Query Frame = 1 Query: 1 PMSIERVEGSVSPGYRRRFLAGLKPLVAVIAGLLAGYYLLPDMPMAEQLATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTLRSLVAGALLIPWLGLPWHDALAVASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREIVALAIIPLLIANRPAMAIGYGGATAMDFTLPVIRSSGGLTCVPVAIASGFLLSFLSPVLMGVFLSLG 645
PM+ E+ + SPGYRR F+AGLKPL+AV+ GLLAGY+LLP +P+ E +ATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIA+ALTL SL AGALLIP L LPWHD LA+ASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREI+ALAIIPLLIA RPAMAIGYGGATAMDFTLPVIRSSGGL CVPVAIASGFLLSFLSPV+MGVFLSLG
Sbjct: 88 PMATEQGQCGESPGYRRLFMAGLKPLLAVLLGLLAGYFLLPPVPLVEDVATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIAVALTLSSLAAGALLIPVLALPWHDVLALASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREIIALAIIPLLIATRPAMAIGYGGATAMDFTLPVIRSSGGLACVPVAIASGFLLSFLSPVMMGVFLSLG 302
BLAST of mRNA_C-australica_Contig_10051.1.1 vs. uniprot
Match: A0A366GHK8_9GAMM (Uncharacterized membrane protein YbjE (DUF340 family) n=3 Tax=Marinobacter pelagius TaxID=379482 RepID=A0A366GHK8_9GAMM) HSP 1 Score: 350 bits (898), Expect = 1.880e-119 Identity = 180/215 (83.72%), Postives = 198/215 (92.09%), Query Frame = 1 Query: 1 PMSIERVEGSVSPGYRRRFLAGLKPLVAVIAGLLAGYYLLPDMPMAEQLATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTLRSLVAGALLIPWLGLPWHDALAVASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREIVALAIIPLLIANRPAMAIGYGGATAMDFTLPVIRSSGGLTCVPVAIASGFLLSFLSPVLMGVFLSLG 645
PM +ER + PGYRR FLAGLKPLVAVIAGL+AGY+LLP +PM +Q+ATW+LMLLLFLIGLQLRNAGLSL KLL+NRQGLG+AL++ + SLVAG LLIP LGLPWHD LA+ASGFGWYSLSGIV+G+ALGPAWGGVAFLNDVLREI+ALAIIPLLIA+RPAMAIGYGGATAMDFTLPVIRSSGGL CVPVAIASGFLLSF SPVLMGVFLSLG
Sbjct: 88 PMKVERDDSDGRPGYRRLFLAGLKPLVAVIAGLIAGYFLLPALPMTDQVATWALMLLLFLIGLQLRNAGLSLHKLLVNRQGLGMALSVMVSSLVAGVLLIPVLGLPWHDVLALASGFGWYSLSGIVVGDALGPAWGGVAFLNDVLREIIALAIIPLLIASRPAMAIGYGGATAMDFTLPVIRSSGGLVCVPVAIASGFLLSFFSPVLMGVFLSLG 302
BLAST of mRNA_C-australica_Contig_10051.1.1 vs. uniprot
Match: A0A072N1R9_9GAMM (Membrane protein n=1 Tax=Marinobacter nitratireducens TaxID=1137280 RepID=A0A072N1R9_9GAMM) HSP 1 Score: 346 bits (888), Expect = 6.230e-118 Identity = 179/215 (83.26%), Postives = 195/215 (90.70%), Query Frame = 1 Query: 1 PMSIERVEGSVSPGYRRRFLAGLKPLVAVIAGLLAGYYLLPDMPMAEQLATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTLRSLVAGALLIPWLGLPWHDALAVASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREIVALAIIPLLIANRPAMAIGYGGATAMDFTLPVIRSSGGLTCVPVAIASGFLLSFLSPVLMGVFLSLG 645
PM ++ G GY+R FLAGLKPL+AV+AGLLAGYY+LP +PM EQLATWSLMLLLFLIGLQLRNAGLSLR+LLMNRQGLGIAL L SLVAG +LIP+L LPWHD LA+ASGFGWYSLSGIVIG+ALGPAWGGVAF+NDVLREI+ALAIIPL+IA RPA+AIGYGGATAMDFTLPVIRSSGGL CVPVAIASGFLLSFLSPVLMGVFLSLG
Sbjct: 88 PMVLQAQNGECDTGYQRLFLAGLKPLLAVVAGLLAGYYVLPKLPMTEQLATWSLMLLLFLIGLQLRNAGLSLRRLLMNRQGLGIALTLVATSLVAGCVLIPFLALPWHDVLALASGFGWYSLSGIVIGDALGPAWGGVAFMNDVLREIIALAIIPLVIAARPAVAIGYGGATAMDFTLPVIRSSGGLECVPVAIASGFLLSFLSPVLMGVFLSLG 302
BLAST of mRNA_C-australica_Contig_10051.1.1 vs. uniprot
Match: A0A1D9GRT3_9GAMM (Uncharacterized protein n=1 Tax=Marinobacter salinus TaxID=1874317 RepID=A0A1D9GRT3_9GAMM) HSP 1 Score: 346 bits (888), Expect = 6.230e-118 Identity = 183/215 (85.12%), Postives = 194/215 (90.23%), Query Frame = 1 Query: 1 PMSIERVEGSVSPGYRRRFLAGLKPLVAVIAGLLAGYYLLPDMPMAEQLATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTLRSLVAGALLIPWLGLPWHDALAVASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREIVALAIIPLLIANRPAMAIGYGGATAMDFTLPVIRSSGGLTCVPVAIASGFLLSFLSPVLMGVFLSLG 645
PM+ E +VSPGY R F+AGLKP +AV+ G+LAGY LLP +PM E LATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALT+ SL AGALLIP L LPWHD LA+ASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREI+ALAIIPLLIA RPAMAIGYGGATAMDFTLPVIR+SGGL CVPVAIASGFLLSFLSPVLM VFLSLG
Sbjct: 88 PMAREESLANVSPGYLRLFMAGLKPTLAVMVGVLAGYLLLPPLPMTEDLATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTISSLAAGALLIPVLALPWHDVLALASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREIIALAIIPLLIAARPAMAIGYGGATAMDFTLPVIRNSGGLACVPVAIASGFLLSFLSPVLMAVFLSLG 302
BLAST of mRNA_C-australica_Contig_10051.1.1 vs. uniprot
Match: A0A5B0VBP2_9GAMM (Lysine exporter LysO family protein n=1 Tax=Marinobacter salinexigens TaxID=2919747 RepID=A0A5B0VBP2_9GAMM) HSP 1 Score: 343 bits (881), Expect = 7.220e-117 Identity = 177/215 (82.33%), Postives = 196/215 (91.16%), Query Frame = 1 Query: 1 PMSIERVEGSVSPGYRRRFLAGLKPLVAVIAGLLAGYYLLPDMPMAEQLATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTLRSLVAGALLIPWLGLPWHDALAVASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREIVALAIIPLLIANRPAMAIGYGGATAMDFTLPVIRSSGGLTCVPVAIASGFLLSFLSPVLMGVFLSLG 645
P+ + + + GYRR F+AGLKPL+AV+AGLLAGYYLLP+MPMAEQ+ATWSLMLLLFLIG+QLRNAGLSLR+LLMNRQGLGIA+ALT SL+AG LIP L LPWHD +A+ SGFGWYSLSGIVIG+ALGPAWGGVAFLNDVLREI+ALAIIPL+IA RPAMAIGYGGATAMDFTLPVIRSSGGL CVPVAIASGFLLSFLSP+LMGVFLSLG
Sbjct: 88 PLVVAKNATDGTTGYRRLFMAGLKPLLAVLAGLLAGYYLLPEMPMAEQVATWSLMLLLFLIGVQLRNAGLSLRRLLMNRQGLGIAMALTASSLLAGLALIPVLALPWHDVMALVSGFGWYSLSGIVIGDALGPAWGGVAFLNDVLREIIALAIIPLVIATRPAMAIGYGGATAMDFTLPVIRSSGGLECVPVAIASGFLLSFLSPILMGVFLSLG 302
BLAST of mRNA_C-australica_Contig_10051.1.1 vs. uniprot
Match: W5YPZ7_9GAMM (Membrane protein n=3 Tax=Marinobacter TaxID=2742 RepID=W5YPZ7_9GAMM) HSP 1 Score: 343 bits (880), Expect = 1.030e-116 Identity = 181/215 (84.19%), Postives = 195/215 (90.70%), Query Frame = 1 Query: 1 PMSIERVEGSVSPGYRRRFLAGLKPLVAVIAGLLAGYYLLPDMPMAEQLATWSLMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTLRSLVAGALLIPWLGLPWHDALAVASGFGWYSLSGIVIGEALGPAWGGVAFLNDVLREIVALAIIPLLIANRPAMAIGYGGATAMDFTLPVIRSSGGLTCVPVAIASGFLLSFLSPVLMGVFLSLG 645
PM+ E +P YRR FLAGLKP++AV+ GLLAGYYLLP +PMAE +AT +LMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTL SL+AG LLIP L LPWHD LA+ASGFGWYSLSGIVIG+ALGPAWGGVAFLNDV+REI+ALAIIPLLI+ RPAMAIGYGGATAMDFTLPVIRSSGGL CVPVAIASGFLLSFLSPVLMGVFLSLG
Sbjct: 88 PMAPAEGEAVGNPSYRRLFLAGLKPMLAVLTGLLAGYYLLPPLPMAESIATGALMLLLFLIGLQLRNAGLSLRKLLMNRQGLGIALALTLSSLLAGVLLIPILALPWHDVLALASGFGWYSLSGIVIGDALGPAWGGVAFLNDVIREIIALAIIPLLISARPAMAIGYGGATAMDFTLPVIRSSGGLACVPVAIASGFLLSFLSPVLMGVFLSLG 302 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10051.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10051.1.1 >prot_C-australica_Contig_10051.1.1 ID=prot_C-australica_Contig_10051.1.1|Name=mRNA_C-australica_Contig_10051.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=215bp MSIERVEGSVSPGYRRRFLAGLKPLVAVIAGLLAGYYLLPDMPMAEQLATback to top mRNA from alignment at C-australica_Contig_10051:1..648+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10051.1.1 ID=mRNA_C-australica_Contig_10051.1.1|Name=mRNA_C-australica_Contig_10051.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=648bp|location=Sequence derived from alignment at C-australica_Contig_10051:1..648+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10051:1..648+ >mRNA_C-australica_Contig_10051.1.1 ID=mRNA_C-australica_Contig_10051.1.1|Name=mRNA_C-australica_Contig_10051.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=645bp|location=Sequence derived from alignment at C-australica_Contig_10051:1..648+ (Chrysoparadoxa australica CS_1217)back to top |