mRNA_C-australica_Contig_1005.1.3 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1005.1.3
Unique NamemRNA_C-australica_Contig_1005.1.3
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1005.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1005contigC-australica_Contig_1005:319..4571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2828
Hectar predicted targeting categoryother localisation
Exons15
Cds size1500
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1005.1.3prot_C-australica_Contig_1005.1.3Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1005 990..3525 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586739.2453535-UTR-C-australica_Contig_1005:318..3681682586739.2453535-UTR-C-australica_Contig_1005:318..368Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1005 319..368 +
1682586739.25666-UTR-C-australica_Contig_1005:421..5691682586739.25666-UTR-C-australica_Contig_1005:421..569Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1005 422..569 +
1682586739.2711158-UTR-C-australica_Contig_1005:665..8461682586739.2711158-UTR-C-australica_Contig_1005:665..846Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1005 666..846 +
1682586739.279294-UTR-C-australica_Contig_1005:958..9891682586739.279294-UTR-C-australica_Contig_1005:958..989Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1005 959..989 +
1682586739.4002664-UTR-C-australica_Contig_1005:3525..35401682586739.4002664-UTR-C-australica_Contig_1005:3525..3540Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1005 3526..3540 +
1682586739.416028-UTR-C-australica_Contig_1005:3668..45711682586739.416028-UTR-C-australica_Contig_1005:3668..4571Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1005 3669..4571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586739.287769-CDS-C-australica_Contig_1005:989..10731682586739.287769-CDS-C-australica_Contig_1005:989..1073Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1005 990..1073 +
1682586739.2974837-CDS-C-australica_Contig_1005:1161..13171682586739.2974837-CDS-C-australica_Contig_1005:1161..1317Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1005 1162..1317 +
1682586739.3072054-CDS-C-australica_Contig_1005:1452..14971682586739.3072054-CDS-C-australica_Contig_1005:1452..1497Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1005 1453..1497 +
1682586739.316855-CDS-C-australica_Contig_1005:1611..17371682586739.316855-CDS-C-australica_Contig_1005:1611..1737Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1005 1612..1737 +
1682586739.3271394-CDS-C-australica_Contig_1005:1847..19811682586739.3271394-CDS-C-australica_Contig_1005:1847..1981Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1005 1848..1981 +
1682586739.338435-CDS-C-australica_Contig_1005:2162..23581682586739.338435-CDS-C-australica_Contig_1005:2162..2358Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1005 2163..2358 +
1682586739.3474572-CDS-C-australica_Contig_1005:2427..26941682586739.3474572-CDS-C-australica_Contig_1005:2427..2694Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1005 2428..2694 +
1682586739.3577964-CDS-C-australica_Contig_1005:2784..29861682586739.3577964-CDS-C-australica_Contig_1005:2784..2986Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1005 2785..2986 +
1682586739.3666608-CDS-C-australica_Contig_1005:3090..31691682586739.3666608-CDS-C-australica_Contig_1005:3090..3169Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1005 3091..3169 +
1682586739.375848-CDS-C-australica_Contig_1005:3245..33341682586739.375848-CDS-C-australica_Contig_1005:3245..3334Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1005 3246..3334 +
1682586739.3872886-CDS-C-australica_Contig_1005:3403..35251682586739.3872886-CDS-C-australica_Contig_1005:3403..3525Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1005 3404..3525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1005.1.3

>prot_C-australica_Contig_1005.1.3 ID=prot_C-australica_Contig_1005.1.3|Name=mRNA_C-australica_Contig_1005.1.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=500bp
MASALTEAARAAGLADESELPVTLQQGKVACEALRSLVEDTDDASCPYSP
WGTEHCGKRVKEWSKATVSLFMRRLGLDRSTTAKLSAPGMELLGRVQKRF
LHGGSMSSSLFGCTLPSLMLHRLLFHFTSLAWLAVWEEGRCLPTCSSGQI
SCGPKELARALAAILWTKENTLEHAPTEKKKRRSRRRRSSYSGHCKNSPP
PPYRSTSPEQHLQSSPPPYNCHTLQQQPCNTSVHSASVNLSPTKQRVAKK
AYKKYSGTATTAATAPAAAANPSPYRSGQPLYRDHDQAPCAEGLPQELRM
DPRVSTAAGIGSINAWTAPTLRNRPDALLSDPARKEKVADKLWERGGAKV
ATGNRTTVCVRPATFEFRLDDCIRFQGERAAEQPQKSHVRTCRPSSRRGQ
LKAAAESERKGPRQKEWKWDPAEEAAKNEKAQALLLRLLRERTATKSREV
RRPSKKTEAESSWQRETTESPRQSQREDAMKKSLIETWELEIKSLPRRS*
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mRNA from alignment at C-australica_Contig_1005:319..4571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1005.1.3 ID=mRNA_C-australica_Contig_1005.1.3|Name=mRNA_C-australica_Contig_1005.1.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4253bp|location=Sequence derived from alignment at C-australica_Contig_1005:319..4571+ (Chrysoparadoxa australica CS_1217)
GTGCAACTGCTCTGCTCACGTTCGGAGAGAAATTACAGGCGGGGAAAGAG
GTGCGGAGGCATCTTGCACGTTTACCTGCATCCTTCTGACCCACTTTGTC
TAGGTGGTAAGGGAAGAAGAGGCGGCACGGGAGGCAGCAACGGAGCTCCA
AAGCTCACCTTTGGGTTTTGAGAGCGGTTCGCGTGAACTGGCTGCTGTGC
TGCAGAAAGCAACCAGCATTCATTCCGCTGCTAACCGCCAGGAGAAAGAA
CGTAAGAAAAAAGATTAGCTGTATAAGGGCAACAGCCACATCCTTGCTCA
TTAAATAGATGCCACTCACTCCTTCTCTCTCTGGATACTACTCTCAGGCG
GACTTAGAAGGAGCGCTTTGAATCAATGCCAAGATGTAGCACGCATTACC
TTGGGCCAGCACCTCTGGGTCAGACCCTGTGAGGCCGAAACCGTGCTAGA
TGCCATCGGCATCAGAGTTAGAGGAAAGCCATGGGCAAGAAGCACAGGAG
GGGGCAAGCCAAGTATACACCTGCCAGGGTGAGTGAGTGAGTGAGTGAGT
GAGCGAGTGGGAGAGGAGTCGGAGGTGAAGAGGAAAGAGTGACCTATGGC
ATGTTGAGTGCTGTCCAACTTCATCTTGTTTTTGCTCCAGGGCTGTGGGA
GTGGCAACCTCTCATGCGGAGATGGCCAGTGCTTTGACTGAGGCAGCCAG
GGCAGCAGGACTGGCAGATGAGTCAGAGCTTCCAGTCACCTTACAGCAAG
GAAAGGTGGGTCAGACGCGTTCTTCTCTCCTCCATAGTACGCTGCATACC
GCAACCTCCTCCTCCCTCATGTAAGTGTTTTCTATGTGATAAGGTGGCAT
GTGAAGCATTGCGCTCCCTGGTGGAAGACACCGATGATGCCAGTTGCCCT
TACTCCCCATGGGGTACGGAACATTGTGGCAAAAGGGTTAAGGAGTGGTC
GAAGGCAACCGTGAGCCTCTTTATGCGGCGGTTGGGACTAGATAGATCGG
TACGGGTGCAGAAAACTTAAGCCTTTATTAAGAATGGCTCACAGGCTATG
CACCTCTTCTATTCCCCCTCCTGACTTCACTTCACCTCACTTCAGTTCAC
TTCTCTCTCTCTTTCTCTCTCTATTTTCCACAAGACTACTGCCAAACTCT
CTGCTCCAGGCATGGAGCTACTTGGCAGGGTAAGCAAGCAGTTGCCCTGT
CCCGAAGCATATGAGCTAAGCAATCACACGCCAGTTAGTTACTTGCTTGA
TCTGTTGACAGTATGATTCCGCCCACCCATTCTCCTCCTCTAGGTACAGA
AGCGCTTCCTTCACGGAGGCTCTATGAGCAGCAGCTTATTTGGCTGTACA
TTGCCCTCACTCATGCTGCACAGACTGCTGTTTCACTTCACTTCCCTTGC
CTGGCTGGCAGTATGGGAGGTGAGGGCTTGGCAGTGCTTTCTCTGTGCTT
GTGCGAACAGGACTGAGCATCAGGCTCAAAATCACTCCCTGGATACACCG
ATCTCATACCCCGTCGTGCCCTTACCCAGGAGGGCCGTTGCCTCCCTACC
TGCAGCAGTGGACAAATATCTTGTGGTCCAAAGGAGCTTGCAAGGGCACT
CGCAGCTATCCTGTGGACCAAAGAGAATACGCTGGAGCACGCACCAACTG
AAAAGAAGAAGAGGTGATGCAAGAGCCATTTTGCTCCCTCCATGGTCGCT
CTCGCTCTCCTTTCCTTCATTGCATTTTTATTGCCCTGCTGATATGAATG
GTACTGGCTGGGTTACTGTTCTTGATCTTTTCCTTTTAATTGTATCCATT
CCTCCATGGCACACCCACACTCCCCCGCCCGCGCCCTCATCCAGGAGGTC
CAGGAGGAGACGAAGCAGTTATTCTGGCCACTGCAAAAACTCCCCACCGC
CTCCTTACCGGAGCACTTCGCCGGAACAGCACCTCCAGTCTAGTCCGCCA
CCATACAACTGTCACACCCTGCAACAACAACCCTGCAACACCAGTGTCCA
CTCTGCTAGTGTAAACCTGTCACCCACCAAGCAGAGAGTGGTAAGTGGGT
GATAGCATGACTTGTAGTGCAGCACCAGCACTTGACCCGTCTACGCCTTC
TAAATCCAGGCTAAAAAGGCATACAAAAAGTATTCCGGTACCGCTACTAC
TGCTGCTACTGCTCCTGCTGCTGCTGCCAACCCTTCACCTTACCGGTCTG
GTCAGCCACTGTATCGTGACCATGACCAGGCGCCATGCGCGGAAGGCTTG
CCCCAAGAGTTGCGTATGGATCCCCGGGTGTCAACTGCTGCTGGTATAGG
ATCCATAAATGCTTGGACAGCTCCAACTTTACGCAATAGACCAGATGCTT
TGCTTAGTGACCCTGCCAGGAAAGAGGTAAGAGAGCAGTAATTCCCTCTA
GCGCGCGTTTGACCCATTCTTGTCTCATTCTCATCTCATCTCATTTGTTT
GACCGAAATGAACTAGAAGGTAGCTGATAAGCTGTGGGAGCGCGGCGGAG
CGAAGGTCGCAACAGGAAACAGGACAACAGTGTGTGTCAGACCAGCTACT
TTCGAGTTTAGACTGGATGACTGCATTCGTTTTCAAGGAGAACGAGCCGC
AGAGCAGCCACAAAAGAGCCACGTGCGCACTTGCAGACCCTCCAGTAGAA
GGGGACAGTTAAAAGCAGGCAGGCAACAAAAAACCAAACATTTTAGCAGT
TAAAAGAGCTTTTGATAGCTGACCATCTTCCTCTCATTCCTAATAGTATG
TCACCGTTGCACCACTTTGCAGCGGCCGAATCAGAAAGGAAAGGGCCCCG
ACAAAAGGAATGGAAGTGGGATCCAGCAGAGGAGGCAGCAAAAAATGAAA
AGTGAGCGGGAGATGCGGCAATGAGAAATCATGGTACCTACCAGCTAACA
CTACCAGACAACCTGCTACATCTTTAGGGCCCAGGCTCTGTTGCTGAGGT
TGCTCAGGGAAAGAACGGCAACAAAGTCTCGGGAGGTACGACGTCCGAGC
AAGAAGACTGAGGCAGGTGAGTTTTCACTGGCTTCAGAGCAATGACGGTT
ATAGGTTGCTAAAATGGAGTACAAAATCAATACAGAAAGCAGTTGGCAGC
GGGAGACTACTGAGAGCCCAAGGCAAAGTCAAAGAGAAGATGCAATGAAG
AAATCGCTGATTGAGACATGGGAACTGGAGATAAAGTCTCTTCCTCGAAG
AAGCTGAGCAGGAGCTAACTAAGTAAGCCCTGTCATACCTGATCCTCATT
TCTGCCTGGTCCCAAGCCGCTGCAACCCTTCATATATCCCATGGATTCCT
CGCTCAGTGTAGAGATGACTGACGTGATCGTGATTGTGACATACGCATAG
GCAGAGACAGGGACCATGTCACAGAGAAACTATCCCCAATGAGTGCAATA
GCACCAGCACAACTGCAAATATCTCGGGAAGCAAGTTTTACCATACCCCT
CTGCTAGGGCCCTCGCCATCATATCCTGCACCTGGTTGGGTTATGCGTCT
GCCGCCCGAGTCTGTTTTTGTCGTGGACAAAGGGTGACTGAGTTGAAAAG
GAGGGGGAAAGGGGGGCATTAATCAACTGGCCAGTGCAGAGCCAGCGTCA
TGGATACTCCGCCATCCCTATGTGGGAGGGCAAGAAAGAAAGCCCTCGCC
CCAGGGGTCTGCTGGCTGCCAGGTAAAGTCAGGCATGATGCCGAGTCCCG
GTGCAGTGACCTACACAATTCCCCCGCCTCTCTCCTATCATGAGAAGGCG
AGCACCGTTGGGCATATGTACTGCATTTATTGAACACGGAGGCAGGCATA
AATACTGCAGAAAAAGAAACTTGCGTCCAGGGCAGATTCTAATCTCATGC
CGTACAGCTTGCTCAATCACTGGGGAGGTCCATTAGATGATGCCAGCCTG
AAAGGGTGAACCTTCATGAAAAAAAGAAGAAGTGGGGTACAAAACGGTCT
TACCTTCACTTTGCCTCTCTTCCAGTTTTAACTTTGTTAGTAACTTTGCC
GTATCCATGACAGAGGCTGTTGTATGAACAGTTAAATTGGCTGTCAGAAC
AACTTGGACCAGTCCTTGAGCCAGCTCCTGTTTCCGGATTGCAGATGACC
CCAGACGTGAAAGTGGAAATGAGCTAGATTCAGGTATAGGTTCCAGGTGA
TATCAGGACTTGACATGTCACCAATCAAATTGCTGCTTACTTGTTGAGTA
CGGCCGTGTGGCACACCCTCTACAATGAGCACTGCTCTCTCATAATGAGT
GCT
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Coding sequence (CDS) from alignment at C-australica_Contig_1005:319..4571+

>mRNA_C-australica_Contig_1005.1.3 ID=mRNA_C-australica_Contig_1005.1.3|Name=mRNA_C-australica_Contig_1005.1.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1500bp|location=Sequence derived from alignment at C-australica_Contig_1005:319..4571+ (Chrysoparadoxa australica CS_1217)
ATGGCCAGTGCTTTGACTGAGGCAGCCAGGGCAGCAGGACTGGCAGATGA
GTCAGAGCTTCCAGTCACCTTACAGCAAGGAAAGGTGGCATGTGAAGCAT
TGCGCTCCCTGGTGGAAGACACCGATGATGCCAGTTGCCCTTACTCCCCA
TGGGGTACGGAACATTGTGGCAAAAGGGTTAAGGAGTGGTCGAAGGCAAC
CGTGAGCCTCTTTATGCGGCGGTTGGGACTAGATAGATCGACTACTGCCA
AACTCTCTGCTCCAGGCATGGAGCTACTTGGCAGGGTACAGAAGCGCTTC
CTTCACGGAGGCTCTATGAGCAGCAGCTTATTTGGCTGTACATTGCCCTC
ACTCATGCTGCACAGACTGCTGTTTCACTTCACTTCCCTTGCCTGGCTGG
CAGTATGGGAGGAGGGCCGTTGCCTCCCTACCTGCAGCAGTGGACAAATA
TCTTGTGGTCCAAAGGAGCTTGCAAGGGCACTCGCAGCTATCCTGTGGAC
CAAAGAGAATACGCTGGAGCACGCACCAACTGAAAAGAAGAAGAGGAGGT
CCAGGAGGAGACGAAGCAGTTATTCTGGCCACTGCAAAAACTCCCCACCG
CCTCCTTACCGGAGCACTTCGCCGGAACAGCACCTCCAGTCTAGTCCGCC
ACCATACAACTGTCACACCCTGCAACAACAACCCTGCAACACCAGTGTCC
ACTCTGCTAGTGTAAACCTGTCACCCACCAAGCAGAGAGTGGCTAAAAAG
GCATACAAAAAGTATTCCGGTACCGCTACTACTGCTGCTACTGCTCCTGC
TGCTGCTGCCAACCCTTCACCTTACCGGTCTGGTCAGCCACTGTATCGTG
ACCATGACCAGGCGCCATGCGCGGAAGGCTTGCCCCAAGAGTTGCGTATG
GATCCCCGGGTGTCAACTGCTGCTGGTATAGGATCCATAAATGCTTGGAC
AGCTCCAACTTTACGCAATAGACCAGATGCTTTGCTTAGTGACCCTGCCA
GGAAAGAGAAGGTAGCTGATAAGCTGTGGGAGCGCGGCGGAGCGAAGGTC
GCAACAGGAAACAGGACAACAGTGTGTGTCAGACCAGCTACTTTCGAGTT
TAGACTGGATGACTGCATTCGTTTTCAAGGAGAACGAGCCGCAGAGCAGC
CACAAAAGAGCCACGTGCGCACTTGCAGACCCTCCAGTAGAAGGGGACAG
TTAAAAGCAGCGGCCGAATCAGAAAGGAAAGGGCCCCGACAAAAGGAATG
GAAGTGGGATCCAGCAGAGGAGGCAGCAAAAAATGAAAAGGCCCAGGCTC
TGTTGCTGAGGTTGCTCAGGGAAAGAACGGCAACAAAGTCTCGGGAGGTA
CGACGTCCGAGCAAGAAGACTGAGGCAGAAAGCAGTTGGCAGCGGGAGAC
TACTGAGAGCCCAAGGCAAAGTCAAAGAGAAGATGCAATGAAGAAATCGC
TGATTGAGACATGGGAACTGGAGATAAAGTCTCTTCCTCGAAGAAGCTGA
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