mRNA_C-australica_Contig_1004.9.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1004.9.1
Unique NamemRNA_C-australica_Contig_1004.9.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: A0A6H5L695_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L695_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 8.120e-61
Identity = 126/317 (39.75%), Postives = 188/317 (59.31%), Query Frame = 1
Query:  538 RVTGAAHKAEKILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEH-FPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVKDVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSELTSLDETSSAAHLLRALEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALEDLKELWNYYQRVMLLLVSQ--VSSGCSQDELKRGKRHAAFALKAGAVVKAQSKRTERILNRYGYKSRCKVRRELTGEVLEELLSDISNRL 1479
            ++TG  HK  K++RE+KG+ SSD+EKTL+KATRPDN+PAKRKHV LLL+A EH FP+YM          ++GPYWM LHKLWRRMAE+D+RT +KA+YV                      +RR+ D  T ++YF RR + +V  +G  ++E+L  YA+ V LR+Q+ SP   EL ++D  +      R+LEK   LI+AA+ C++      +DNDVTCD   L +EDL E+W+ +Q+ + + + Q    +G S  EL+R      F L+  +  +   + + R+L  YG+     +  +L  E+L+E ++ I   L
Sbjct:  315 KMTGVTHKGAKVMRELKGSISSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMNPKDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALACEIGPD---LDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTGAGFSSGELRRTLSFLEFYLEQLSAAQGLVQESHRLLALYGHAVPKGLGDDLATEMLQEQVAWIQEEL 628          
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: D8LGM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM3_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 1.230e-60
Identity = 125/317 (39.43%), Postives = 186/317 (58.68%), Query Frame = 1
Query:  538 RVTGAAHKAEKILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEH-FPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVKDVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSELTSLDETSSAAHLLRALEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALEDLKELWNYYQRVMLLLVSQ--VSSGCSQDELKRGKRHAAFALKAGAVVKAQSKRTERILNRYGYKSRCKVRRELTGEVLEELLSDISNRL 1479
            ++TG  HK  K++RE+KG+ SSD+EKTL+KATRPDN+PAKRKHV LLL+A EH FP+YM          ++GPYWM LHKLWRRMAE+D+RT +KA+YV                      +RR+ D  T ++YF RR + +V  +G  ++E+L  YA+ V LR+Q+ SP   EL ++D  +      R+LEK   LI+AA+ C++      +DNDVTCD   L +EDL E+W+ +Q+ + + + Q     G S  EL+R      F L+  +  +   + + R+L  Y +     +  +L  E+L+E ++ I   L
Sbjct:  280 KMTGVTHKGAKVMRELKGSISSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMNPKDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALACEIGPD---LDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTGGGFSSGELRRTLSFLEFYLEQLSAAQGLVQESHRLLALYSHAVPKGLGDDLATEMLQEQVAWIQEEL 593          
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: H6WB97_VAULI (ENTH domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB97_VAULI)

HSP 1 Score: 112 bits (279), Expect = 3.210e-23
Identity = 73/240 (30.42%), Postives = 123/240 (51.25%), Query Frame = 1
Query:  547 GAAHKAEKILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHFPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVKDVSSNGLQYAEFLGNYADLVFLRVQTLSPGC----SELTSLDETSSAAHLLRALEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALEDLKELWNYYQRVM 1254
            G  +K +K++RE K   SSDME T+LKATRP++N AKRKHV+ ++ A+ +FP ++    +  R + +GPY M+L KLWR+M   DWRT  K+LY+                      LR    P      F  + +K    N  +  +F+   A  VF R++ +SP      SE+ ++++ S+   +L  ++  +  I+  + C     +  I +++  D++ L   D  +LW  Y+ +M
Sbjct:   68 GLINKVKKLIREGKSLLSSDMEMTVLKATRPNDNLAKRKHVKRMIGASLYFPTFLKIEGQVPRNREEGPYHMLLLKLWRQMKSSDWRTSTKSLYILHRLAIETSAESYTHFHRTFLELRASVQPPP----FEPKQIKRSPQNN-EKMKFIKKQAKFVFNRIEQISPDINSLFSEMCAMEKVSTET-ILAWMKNLQKAIEVGIECSGLLND--IGSEIEADSSLLIANDTVKLWELYEALM 299          
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: A0A4D9DHA3_9STRA (ENTH domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHA3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.740e-20
Identity = 90/310 (29.03%), Postives = 141/310 (45.48%), Query Frame = 1
Query:  535 ERVTGAAHKAEKILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHFPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVK--DVSSNG--------LQYAEFLGNYADLVFLRVQTLSPGCSELTSLDETS-SAAHLLRALEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALEDLKELWN-YYQRVMLLLVSQVSSGCSQDELKRGK---RHAAFALKAGAVVKAQSKRTERILNRYGYKSRCKV 1419
            E+V G A K +K+ RE+K  FS D E  LLKATRPD+     + +  +L AT  F        ++       PY + L KLW +MAE+DWRTVAKALY+                    A + RE   KT ++YF   A+   DV            L   +F+  Y+  V  R +T +    E+  + +    A  L+  L K E ++ + + C L   EE  D++VT   A L   D+ +L   +++++   + +Q ++    D  +  K   R  A   +    V+    +T ++L  YG K R K+
Sbjct:  229 EKVQGMASKGKKMTRELKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATATFHR------DEDLTAGSNPYRVTLRKLWAKMAERDWRTVAKALYLFHVLLRECEPDDVRIYKKVCAKMSREGCKKTRSRYFDAGAISAVDVMDGAGVGGAGACLDRRDFIARYSKYVLQRAKTFTSKFEEMKVIGQREIEAKDLVGQLGKAEKVLSSGLECALGEAEEDADSEVTLMCAELVARDVYDLSRLFHEKLRWAIDNQAAAFEGADRAEVAKILERFQASYARLYPQVQQFLTQTAQLLGVYGIKLRTKL 532          
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: A0A6S8JKL4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8JKL4_9STRA)

HSP 1 Score: 103 bits (257), Expect = 6.500e-20
Identity = 76/227 (33.48%), Postives = 104/227 (45.81%), Query Frame = 1
Query:  571 ILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHF-PMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVK--DVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSELTSLDET---------SSAAHLLRALEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALE 1215
            I R++KG  SS++E+ +LKAT+PD+ PAK KHVE L+  T    P Y               Y  VL KLW +M EKDWRT  KALYV                      LRR  DPK   K+F  + +   D     +++  F+  YA  V LR Q  S    E++S  +          +S A     LE   +L+KA + C+L   EE       C+  A+A+E
Sbjct:   98 IYRDLKGLTSSELEQVMLKATKPDDTPAKGKHVERLVGVTYQISPRY-------------DIYDAVLRKLWGKMCEKDWRTTMKALYVLHRFSADGAPEHAASLKARLRELRRTKDPKRKDKFFNSKQLLAGDAKPENIKFRAFMSRYAHYVLLRAQCFSGMFEEISSEPKVDKKKPPKPITSTALRTEHLEAASMLLKAGLACQLKDGEE-------CENTAIAVE 304          
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: A0A7S4VB79_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VB79_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.160e-19
Identity = 82/233 (35.19%), Postives = 107/233 (45.92%), Query Frame = 1
Query:  571 ILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHFPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVK--DVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSEL--------TSLDETSSAAHL------LRA--LEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALE 1215
            I RE+KG  SS++E+ +LKATRPD+ P K KHVE L+  T             GR      Y  VL KLW +MAEKDWRT  KALY+                      LRR  DPK   KYF  + +   D +     +  F+  YA  V LR Q      +E+        +S   +++AA        LR   LE ++LL+KA   C L   EE       C++ ALALE
Sbjct:  277 IYREIKGLTSSELEQVMLKATRPDDQPVKGKHVERLVGVTYQI---------SGRYDI---YDAVLRKLWNKMAEKDWRTTIKALYILHRFSSDGGPDHQAALKARLRELRRTRDPKRKEKYFNSKQLLEGDATPENQPFRAFMARYAHYVLLRAQCFGGMFTEIKENPSAPPSSKKPSAAAAQKPITSTSLRPEHLEASQLLLKAGCACALKDGEE-------CESTALALE 490          
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: B7G2T5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2T5_PHATC)

HSP 1 Score: 101 bits (251), Expect = 7.460e-19
Identity = 79/227 (34.80%), Postives = 104/227 (45.81%), Query Frame = 1
Query:  571 ILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHF-PMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVKDVSSN--GLQYAEFLGNYADLVFLRVQTLSPGCSELTS---LDETSSAAHL----LRA--LEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALE 1215
            I REVKG  SS++E+ +LKATRPD+ P K KHVE L+  T    P Y               Y  VL KLW +MAEKDWRT  K+LY+                      LRR  DPK   KYF  + +    SN   +++  F+  YA  V LR Q       E++    LD+      +    LR+  LE   +L+KA V C+L   E        C+  A+A E
Sbjct:  245 IYREVKGLTSSELEQVMLKATRPDDTPVKGKHVERLVGVTYQISPRY-------------DIYDAVLRKLWGKMAEKDWRTTIKSLYILHRFSADGAPEHAAALKARLRELRRTRDPKRKDKYFNSKQLLAGESNPENIKFRAFMSRYAHYVLLRAQCFGGLFDEISQEPKLDKKKPPKAITTTSLRSEHLEAAAMLLKAGVACQLKEDE-------ACENTAIAAE 451          
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: A0A1E7FBW9_9STRA (ENTH domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBW9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.400e-18
Identity = 74/211 (35.07%), Postives = 97/211 (45.97%), Query Frame = 1
Query:  571 ILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHFPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVK--DVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSELT---SLDETSSAAHL------LRA--LEKTELLIKAAVLCKLDSKE 1164
            + REVKG  SS++E+ +LKATRPD+ P K KH E L+  T             GR      Y  VL KLW +MAEKDWRT  KALY+                      LRR  DPK   K+F  + ++  D      ++  F+G YA  V LR Q       E+    S D+   AA        LR+  L+  +LL+K  V C L + E
Sbjct:   29 LFREVKGLTSSELEQVMLKATRPDDTPVKGKHAERLVGVTYQI---------SGRYDI---YDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPDHAPALKARVRELRRTRDPKRKGKFFSSKLLQAGDDKPESAKFRAFMGRYAHYVLLRAQCFGGMFDEIAAPPSADKKKKAAPKPITSTSLRSDHLDAAKLLLKTGVACVLKNGE 227          
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: A0A7R9ZH59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH59_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.700e-18
Identity = 66/174 (37.93%), Postives = 83/174 (47.70%), Query Frame = 1
Query:  571 ILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHFPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVK--DVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSELTSLDETSSA 1086
            + REVKG  SS++E+ +LKAT+P++ P K KHVE L+  T             GR      Y  VL KLW +MAEKDWRT  KALYV                      LRR  DPK   KYF  + +   D S    +Y  FL  YA  V LR Q      +E++  D  S+A
Sbjct:   74 VYREVKGLTSSELEQVMLKATQPNDAPVKGKHVERLVGVTYQI---------SGRYDI---YDAVLRKLWSKMAEKDWRTKIKALYVLHRFSADGAPDHQAALKARLRELRRTRDPKRKEKYFNSKQLLGGDASPENAKYRAFLARYAHYVLLRAQCFGGMFNEISG-DPASAA 234          
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: A0A448ZTH1_9STRA (ENTH domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTH1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.890e-17
Identity = 78/231 (33.77%), Postives = 101/231 (43.72%), Query Frame = 1
Query:  571 ILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHFPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVK--DVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSELT--SLDETSS--------AAHLLRA--LEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALEDL 1221
            + REVKG  SS++E+ +LKATRPD+ P K KH E L+  T                 R   Y  VL KLW +MAEKDWRT  KALY+                      LRR  DPK   K+F  + +   D S    +Y  FLG YA  V LR Q       E+   S  +T           +  L+A  L+  +LL++  + C L   EE   N+ T  A      DL
Sbjct:  219 LYREVKGLTSSELEQVMLKATRPDDTPVKGKHAERLVGVTYQISA------------RYDIYDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPEHAPALKARVRELRRTRDPKRKGKFFSSKLLLAGDTSEETAKYRAFLGRYAHYVLLRAQCFGGMFDEIAAPSAKDTKKKKAAPKPITSTSLKADHLDAAKLLLETGLACVLKKGEE---NENTALAVERVASDL 434          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5L695_9PHAE8.120e-6139.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGM3_ECTSI1.230e-6039.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
H6WB97_VAULI3.210e-2330.42ENTH domain-containing protein n=1 Tax=Vaucheria l... [more]
A0A4D9DHA3_9STRA2.740e-2029.03ENTH domain-containing protein n=3 Tax=Monodopsida... [more]
A0A6S8JKL4_9STRA6.500e-2033.48Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4VB79_9STRA1.160e-1935.19Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B7G2T5_PHATC7.460e-1934.80Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1E7FBW9_9STRA4.400e-1835.07ENTH domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7R9ZH59_9STRA8.700e-1837.93Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A448ZTH1_9STRA2.890e-1733.77ENTH domain-containing protein n=1 Tax=Pseudo-nitz... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1004contigC-australica_Contig_1004:12798..16058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGM3
Model size1698
Max annot lvl2880.D8LGM3|-
Hectar predicted targeting categoryother localisation
Exons16
Evalue9.15e-64
EggNOG OGs2ECB5@1|root,2SI7J@2759|Eukaryota
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-10_002760.1
Cds size1029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586738.890375-UTR-C-australica_Contig_1004:12797..129011682586738.890375-UTR-C-australica_Contig_1004:12797..12901Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 12798..12901 +
1682586738.8994842-UTR-C-australica_Contig_1004:12958..132371682586738.8994842-UTR-C-australica_Contig_1004:12958..13237Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 12959..13237 +
1682586738.9103873-UTR-C-australica_Contig_1004:13339..134331682586738.9103873-UTR-C-australica_Contig_1004:13339..13433Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 13340..13433 +
1682586739.0370858-UTR-C-australica_Contig_1004:15866..160581682586739.0370858-UTR-C-australica_Contig_1004:15866..16058Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 15867..16058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586738.9196334-CDS-C-australica_Contig_1004:13433..134771682586738.9196334-CDS-C-australica_Contig_1004:13433..13477Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 13434..13477 +
1682586738.9278126-CDS-C-australica_Contig_1004:13579..136401682586738.9278126-CDS-C-australica_Contig_1004:13579..13640Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 13580..13640 +
1682586738.936027-CDS-C-australica_Contig_1004:13706..137511682586738.936027-CDS-C-australica_Contig_1004:13706..13751Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 13707..13751 +
1682586738.9444141-CDS-C-australica_Contig_1004:13839..139291682586738.9444141-CDS-C-australica_Contig_1004:13839..13929Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 13840..13929 +
1682586738.9528582-CDS-C-australica_Contig_1004:14100..141811682586738.9528582-CDS-C-australica_Contig_1004:14100..14181Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 14101..14181 +
1682586738.9609768-CDS-C-australica_Contig_1004:14252..143031682586738.9609768-CDS-C-australica_Contig_1004:14252..14303Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 14253..14303 +
1682586738.9691026-CDS-C-australica_Contig_1004:14430..145281682586738.9691026-CDS-C-australica_Contig_1004:14430..14528Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 14431..14528 +
1682586738.9772096-CDS-C-australica_Contig_1004:14652..146931682586738.9772096-CDS-C-australica_Contig_1004:14652..14693Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 14653..14693 +
1682586738.9853494-CDS-C-australica_Contig_1004:14786..148981682586738.9853494-CDS-C-australica_Contig_1004:14786..14898Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 14787..14898 +
1682586738.996085-CDS-C-australica_Contig_1004:14991..150521682586738.996085-CDS-C-australica_Contig_1004:14991..15052Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 14992..15052 +
1682586739.004235-CDS-C-australica_Contig_1004:15135..152211682586739.004235-CDS-C-australica_Contig_1004:15135..15221Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 15136..15221 +
1682586739.0126708-CDS-C-australica_Contig_1004:15315..154361682586739.0126708-CDS-C-australica_Contig_1004:15315..15436Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 15316..15436 +
1682586739.0206642-CDS-C-australica_Contig_1004:15534..155821682586739.0206642-CDS-C-australica_Contig_1004:15534..15582Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 15535..15582 +
1682586739.028945-CDS-C-australica_Contig_1004:15776..158661682586739.028945-CDS-C-australica_Contig_1004:15776..15866Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 15777..15866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1004.9.1prot_C-australica_Contig_1004.9.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1004 13434..15866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1004.9.1

>prot_C-australica_Contig_1004.9.1 ID=prot_C-australica_Contig_1004.9.1|Name=mRNA_C-australica_Contig_1004.9.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=343bp
MLSPEAIYSQMKAKREEFGERVTGAAHKAEKILREVKGTFSSDMEKTLLK
ATRPDNNPAKRKHVELLLKATEHFPMYMGEGWEDGRVQRDGPYWMVLHKL
WRRMAEKDWRTVAKALYVLHRMGRDMTDDSWRYLAATLASLRREFDPKTG
TKYFRRRAVKDVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSELTSLDET
SSAAHLLRALEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALEDLKE
LWNYYQRVMLLLVSQVSSGCSQDELKRGKRHAAFALKAGAVVKAQSKRTE
RILNRYGYKSRCKVRRELTGEVLEELLSDISNRLQKLEVKGE*
back to top

mRNA from alignment at C-australica_Contig_1004:12798..16058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1004.9.1 ID=mRNA_C-australica_Contig_1004.9.1|Name=mRNA_C-australica_Contig_1004.9.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3261bp|location=Sequence derived from alignment at C-australica_Contig_1004:12798..16058+ (Chrysoparadoxa australica CS_1217)
GTGATAGTGATAGCAGTGTTGGGCCGACAAGGCGTCCGCCCGCACTGGGT CTCTGGGTCTCCTCTTGCGCAGGGTAGCAATTGGCTCTCGTCTTCTGCGC TGAGGTACGTACTGTAGCTCCCCACCCCCTTCCCGCACCACCCTCACCCA ACTTTCTCCAGAGTCCGTGGTGGAGCTGGCCCCAAGACTTCAGTTAGTGC GTCTAAGACAAAGAAGACCAGCAGCAGCAAAGGCAAGCGCACCTCTGCGT CAGGCGGGGCTAGCTCGTCAGGGAAGAAGAAGCGGAAGAAGGCGGCAGCA ACATCACAGCAGGAATCAAGGCCATTGCCCTCACGCAACAGCGCAGTAAG AAAGGCCAAGACATCCTCCTCTACACGTACACGGAAGCAGAGGCCCGTGG AGAGCTCATGGGACAAGGGTGGAAGGGATGATGAGGACAGGTGAATACCT GCCTGGCTTCACAACTCCCTCTGCCGTAGTTAGGCAGGCTTCCTTTTTTT TCCTGTGACATCCACTCCTCTAACCCTCTTTTTCTGCATCAGCTATTCCT TCCGAGAAGATTCTTATGATGATGATGACGAGGATGAGGCTTACTACTAT GATGACTGCGGGAGAAGACACGGGGCTCTCAGCTCCATGCTCAGCCCTGA GGCCATCTACTCGCAGATGAAAGCAAAAAGGTTAGCTTCCGTTTGGTACC TCTAGTGAGCTCTCAGCCTTGGCTCTGTTTCACCTTAGCCTTGACTCTGC CTCACCCTCTTGCACTTGCCATCCTGCCATAGGGAGGAGTTTGGGGAGAG GGTGACAGGAGCGGCCCACAAAGCCGAGAAGATACTGCGTGAGGTGCCTG CCGTCTCCTAGTTGACGTTACCAGCACCCCACCGCCGTCCTCACCTCTCT CAACATCAGGTTAAAGGAACCTTTAGCAGTGACATGGAGAAAACGCTGCT AAAGGTTGTCGCTCTCGGTCCTCGCTTGTGGCGGCTCCCTCACGTTGCAC TCCTGACGTGCGTTAACTAACAGCTCCTCTCTCTGCGTGCAGGCCACCAG GCCAGACAACAACCCCGCCAAGAGGAAACATGTGGAGCTGCTGCTCAAGG CTACAGAGCATTTCCCCATGTACATGGGAGAGGTACAGGTGCCTTACCTG CCTGAAGCTAAAGCCTCTAGGAGTAAACTGCACCTAGACGTTCAGTGCTA GTGGCAGAGCTGCTGCGTTTATAAGTTTATTAGTTTATTAACTCCCCTGA GATGATGCAACTCAATCAAACAACCTACGATTGCTGTGGCTCTTGTGATG CAGGGCTGGGAAGATGGTCGGGTACAGAGAGATGGGCCTTACTGGATGGT GCTGCACAAGCTCTGGAGACGAATGGCAGAGAAGGTATCTATCGTTAGCG CGTAAGGCGTAAGGCTCAAATTTCTACTAACTCGAGCCCATTACCATGAC ACCAGGACTGGAGGACTGTGGCCAAGGCACTTTACGTCCTCCACCGAATG GGAAGGGTACTCCCAACCGTAACATGAGCTGTCAATGATGCCATCTGCTC TTACCCGCCCTGACTGCTAGCTGCCCAGCATCCCTTCAGCGTCATCTTGC CGACGGGCTCACTCGCCTCCCTTGCTTTCCCAGGACATGACTGATGACAG CTGGAGGTATCTTGCTGCAACGCTTGCCAGCTTAAGACGAGAGTTTGACC CAAAGACCGGGACCAAATACTTTAGACGGAGGTAGCTGGCTGCACCACGC ACACACTCACGGCTGCTGCCCTGGCGTTGCTGACATAACTCATGTTCCTG CAACGCGGGCAACTCAACTCACTCTGCTTCTGCTTGCTCAACCATCAAAC TCCAGGGCAGTAAAGGATGTATCTAGCAATGGCCTGCAATACGCAGGTGC AGTGCTTGCATCGACTCGGTGCTTTCTGTGTGAACCAAGGTTGCTGTCTT CTCTACTCTTACCCCTGCCTTCTATTCGTCTTTCCCCAGAGTTCCTGGGC AACTATGCCGACCTAGTCTTCTTGAGGGTGCAGACCCTCAGCCCCGGCTG CTCTGAGTTGACGAGTCTGGACGAAACAAGCTCTGCGGCTCATTTGCTCA GGTGATATGGAGTTGAGGTGTTCTAGCAGCAAAAGCTAGCCAACCAGAAG GTGTCACATTGAATGATACCACTAATGCTGATACCTCAATTTAGGGCTTT GGAGAAGACCGAGCTTCTGATCAAAGCAGCAGTTCTCTGCAAGCTGGATA GTAAGGTGCATACTGGCCTAGCCTCATCTTAACTTTTTGCGATCCCGCCT CTGAAGTACCACTTTCACGTGACTTGGTCCTATGGCAGGAGGAGCTGATC GATAATGACGTCACTTGTGACGCTGCAGCTCTGGCATTGGAAGATCTAAA GGAGCTCTGGAACTACTACCAGAGGTACCCCAGGGCTTGACTTGGCGTTG CGCTCACTCATCTCATCTTGCTCTCACTCATCTCACCTTGCCCTCTCCTG CACCATCTGTGGCCCCAGGGTAATGCTGCTGCTTGTATCGCAAGTCAGCT CAGGGTGCTCGCAGGACGAGCTGAAGCGTGGCAAGCGCCATGCCGCGTTT GCACTCAAGGCGGGGGCAGTGGTGAAAGCGCAATCCAAGGTGAAGACTTC CTCAAAGGCTGGGCTGCCCTGGGTGTTATGTGACTCTGACACTCACCTCT GCGCTCCATCTTATTCTAACTGCACCCTCTACCGTAGCGCACGGAGCGCA TCCTGAACCGGTACGGTTACAAGAGCCGCTGCAAGGTATAACGCAACTCT ACTTTAGACGCTGGCTTTGTTTGCGCTAAAATTAAAAGCCAGCACGGGGT GGGGTGGGTTGATTGATTCAGTGTCAAAGAGGTGAAGGAAGGAGATGGCT TCACTGTGCAATGGAGGCGAGCAGGCAGCGTGCACTGCTAGTACTCTGGC TGAACACAACTCCTCTGATTAAACACTAGGTGAGGCGAGAGCTCACCGGC GAGGTGCTTGAGGAGCTTCTCTCCGATATCAGCAACAGGCTACAAAAGCT CGAAGTCAAAGGGGAATAGACCACCAGGGGGAGGGAGGGACTTTCAAGTT CACTCTTTTTGAAGTCATTTTAGACTCGTATATCGTTAAGGACTTGCGTA CCCATCGTCGATTCTTCTAGATGCCATGTGAAGATGGGACCTTTGAGTTA ATGGTGTAAGGATCTGAATCCATCGTTGATTTATCCATGATTGATTTCTC CCATACAAACA
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_1004:12798..16058+

>mRNA_C-australica_Contig_1004.9.1 ID=mRNA_C-australica_Contig_1004.9.1|Name=mRNA_C-australica_Contig_1004.9.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1029bp|location=Sequence derived from alignment at C-australica_Contig_1004:12798..16058+ (Chrysoparadoxa australica CS_1217)
ATGCTCAGCCCTGAGGCCATCTACTCGCAGATGAAAGCAAAAAGGGAGGA
GTTTGGGGAGAGGGTGACAGGAGCGGCCCACAAAGCCGAGAAGATACTGC
GTGAGGTTAAAGGAACCTTTAGCAGTGACATGGAGAAAACGCTGCTAAAG
GCCACCAGGCCAGACAACAACCCCGCCAAGAGGAAACATGTGGAGCTGCT
GCTCAAGGCTACAGAGCATTTCCCCATGTACATGGGAGAGGGCTGGGAAG
ATGGTCGGGTACAGAGAGATGGGCCTTACTGGATGGTGCTGCACAAGCTC
TGGAGACGAATGGCAGAGAAGGACTGGAGGACTGTGGCCAAGGCACTTTA
CGTCCTCCACCGAATGGGAAGGGACATGACTGATGACAGCTGGAGGTATC
TTGCTGCAACGCTTGCCAGCTTAAGACGAGAGTTTGACCCAAAGACCGGG
ACCAAATACTTTAGACGGAGGGCAGTAAAGGATGTATCTAGCAATGGCCT
GCAATACGCAGAGTTCCTGGGCAACTATGCCGACCTAGTCTTCTTGAGGG
TGCAGACCCTCAGCCCCGGCTGCTCTGAGTTGACGAGTCTGGACGAAACA
AGCTCTGCGGCTCATTTGCTCAGGGCTTTGGAGAAGACCGAGCTTCTGAT
CAAAGCAGCAGTTCTCTGCAAGCTGGATAGTAAGGAGGAGCTGATCGATA
ATGACGTCACTTGTGACGCTGCAGCTCTGGCATTGGAAGATCTAAAGGAG
CTCTGGAACTACTACCAGAGGGTAATGCTGCTGCTTGTATCGCAAGTCAG
CTCAGGGTGCTCGCAGGACGAGCTGAAGCGTGGCAAGCGCCATGCCGCGT
TTGCACTCAAGGCGGGGGCAGTGGTGAAAGCGCAATCCAAGCGCACGGAG
CGCATCCTGAACCGGTACGGTTACAAGAGCCGCTGCAAGGTGAGGCGAGA
GCTCACCGGCGAGGTGCTTGAGGAGCTTCTCTCCGATATCAGCAACAGGC
TACAAAAGCTCGAAGTCAAAGGGGAATAG
back to top