mRNA_C-australica_Contig_1004.9.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: A0A6H5L695_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L695_9PHAE) HSP 1 Score: 224 bits (572), Expect = 8.120e-61 Identity = 126/317 (39.75%), Postives = 188/317 (59.31%), Query Frame = 1 Query: 538 RVTGAAHKAEKILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEH-FPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVKDVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSELTSLDETSSAAHLLRALEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALEDLKELWNYYQRVMLLLVSQ--VSSGCSQDELKRGKRHAAFALKAGAVVKAQSKRTERILNRYGYKSRCKVRRELTGEVLEELLSDISNRL 1479 ++TG HK K++RE+KG+ SSD+EKTL+KATRPDN+PAKRKHV LLL+A EH FP+YM ++GPYWM LHKLWRRMAE+D+RT +KA+YV +RR+ D T ++YF RR + +V +G ++E+L YA+ V LR+Q+ SP EL ++D + R+LEK LI+AA+ C++ +DNDVTCD L +EDL E+W+ +Q+ + + + Q +G S EL+R F L+ + + + + R+L YG+ + +L E+L+E ++ I L Sbjct: 315 KMTGVTHKGAKVMRELKGSISSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMNPKDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALACEIGPD---LDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTGAGFSSGELRRTLSFLEFYLEQLSAAQGLVQESHRLLALYGHAVPKGLGDDLATEMLQEQVAWIQEEL 628
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: D8LGM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM3_ECTSI) HSP 1 Score: 222 bits (565), Expect = 1.230e-60 Identity = 125/317 (39.43%), Postives = 186/317 (58.68%), Query Frame = 1 Query: 538 RVTGAAHKAEKILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEH-FPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVKDVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSELTSLDETSSAAHLLRALEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALEDLKELWNYYQRVMLLLVSQ--VSSGCSQDELKRGKRHAAFALKAGAVVKAQSKRTERILNRYGYKSRCKVRRELTGEVLEELLSDISNRL 1479 ++TG HK K++RE+KG+ SSD+EKTL+KATRPDN+PAKRKHV LLL+A EH FP+YM ++GPYWM LHKLWRRMAE+D+RT +KA+YV +RR+ D T ++YF RR + +V +G ++E+L YA+ V LR+Q+ SP EL ++D + R+LEK LI+AA+ C++ +DNDVTCD L +EDL E+W+ +Q+ + + + Q G S EL+R F L+ + + + + R+L Y + + +L E+L+E ++ I L Sbjct: 280 KMTGVTHKGAKVMRELKGSISSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMNPKDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALACEIGPD---LDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQRFTGGGFSSGELRRTLSFLEFYLEQLSAAQGLVQESHRLLALYSHAVPKGLGDDLATEMLQEQVAWIQEEL 593
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: H6WB97_VAULI (ENTH domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB97_VAULI) HSP 1 Score: 112 bits (279), Expect = 3.210e-23 Identity = 73/240 (30.42%), Postives = 123/240 (51.25%), Query Frame = 1 Query: 547 GAAHKAEKILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHFPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVKDVSSNGLQYAEFLGNYADLVFLRVQTLSPGC----SELTSLDETSSAAHLLRALEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALEDLKELWNYYQRVM 1254 G +K +K++RE K SSDME T+LKATRP++N AKRKHV+ ++ A+ +FP ++ + R + +GPY M+L KLWR+M DWRT K+LY+ LR P F + +K N + +F+ A VF R++ +SP SE+ ++++ S+ +L ++ + I+ + C + I +++ D++ L D +LW Y+ +M Sbjct: 68 GLINKVKKLIREGKSLLSSDMEMTVLKATRPNDNLAKRKHVKRMIGASLYFPTFLKIEGQVPRNREEGPYHMLLLKLWRQMKSSDWRTSTKSLYILHRLAIETSAESYTHFHRTFLELRASVQPPP----FEPKQIKRSPQNN-EKMKFIKKQAKFVFNRIEQISPDINSLFSEMCAMEKVSTET-ILAWMKNLQKAIEVGIECSGLLND--IGSEIEADSSLLIANDTVKLWELYEALM 299
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: A0A4D9DHA3_9STRA (ENTH domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHA3_9STRA) HSP 1 Score: 105 bits (263), Expect = 2.740e-20 Identity = 90/310 (29.03%), Postives = 141/310 (45.48%), Query Frame = 1 Query: 535 ERVTGAAHKAEKILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHFPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVK--DVSSNG--------LQYAEFLGNYADLVFLRVQTLSPGCSELTSLDETS-SAAHLLRALEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALEDLKELWN-YYQRVMLLLVSQVSSGCSQDELKRGK---RHAAFALKAGAVVKAQSKRTERILNRYGYKSRCKV 1419 E+V G A K +K+ RE+K FS D E LLKATRPD+ + + +L AT F ++ PY + L KLW +MAE+DWRTVAKALY+ A + RE KT ++YF A+ DV L +F+ Y+ V R +T + E+ + + A L+ L K E ++ + + C L EE D++VT A L D+ +L +++++ + +Q ++ D + K R A + V+ +T ++L YG K R K+ Sbjct: 229 EKVQGMASKGKKMTRELKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATATFHR------DEDLTAGSNPYRVTLRKLWAKMAERDWRTVAKALYLFHVLLRECEPDDVRIYKKVCAKMSREGCKKTRSRYFDAGAISAVDVMDGAGVGGAGACLDRRDFIARYSKYVLQRAKTFTSKFEEMKVIGQREIEAKDLVGQLGKAEKVLSSGLECALGEAEEDADSEVTLMCAELVARDVYDLSRLFHEKLRWAIDNQAAAFEGADRAEVAKILERFQASYARLYPQVQQFLTQTAQLLGVYGIKLRTKL 532
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: A0A6S8JKL4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8JKL4_9STRA) HSP 1 Score: 103 bits (257), Expect = 6.500e-20 Identity = 76/227 (33.48%), Postives = 104/227 (45.81%), Query Frame = 1 Query: 571 ILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHF-PMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVK--DVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSELTSLDET---------SSAAHLLRALEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALE 1215 I R++KG SS++E+ +LKAT+PD+ PAK KHVE L+ T P Y Y VL KLW +M EKDWRT KALYV LRR DPK K+F + + D +++ F+ YA V LR Q S E++S + +S A LE +L+KA + C+L EE C+ A+A+E Sbjct: 98 IYRDLKGLTSSELEQVMLKATKPDDTPAKGKHVERLVGVTYQISPRY-------------DIYDAVLRKLWGKMCEKDWRTTMKALYVLHRFSADGAPEHAASLKARLRELRRTKDPKRKDKFFNSKQLLAGDAKPENIKFRAFMSRYAHYVLLRAQCFSGMFEEISSEPKVDKKKPPKPITSTALRTEHLEAASMLLKAGLACQLKDGEE-------CENTAIAVE 304
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: A0A7S4VB79_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VB79_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.160e-19 Identity = 82/233 (35.19%), Postives = 107/233 (45.92%), Query Frame = 1 Query: 571 ILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHFPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVK--DVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSEL--------TSLDETSSAAHL------LRA--LEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALE 1215 I RE+KG SS++E+ +LKATRPD+ P K KHVE L+ T GR Y VL KLW +MAEKDWRT KALY+ LRR DPK KYF + + D + + F+ YA V LR Q +E+ +S +++AA LR LE ++LL+KA C L EE C++ ALALE Sbjct: 277 IYREIKGLTSSELEQVMLKATRPDDQPVKGKHVERLVGVTYQI---------SGRYDI---YDAVLRKLWNKMAEKDWRTTIKALYILHRFSSDGGPDHQAALKARLRELRRTRDPKRKEKYFNSKQLLEGDATPENQPFRAFMARYAHYVLLRAQCFGGMFTEIKENPSAPPSSKKPSAAAAQKPITSTSLRPEHLEASQLLLKAGCACALKDGEE-------CESTALALE 490
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: B7G2T5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2T5_PHATC) HSP 1 Score: 101 bits (251), Expect = 7.460e-19 Identity = 79/227 (34.80%), Postives = 104/227 (45.81%), Query Frame = 1 Query: 571 ILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHF-PMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVKDVSSN--GLQYAEFLGNYADLVFLRVQTLSPGCSELTS---LDETSSAAHL----LRA--LEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALE 1215 I REVKG SS++E+ +LKATRPD+ P K KHVE L+ T P Y Y VL KLW +MAEKDWRT K+LY+ LRR DPK KYF + + SN +++ F+ YA V LR Q E++ LD+ + LR+ LE +L+KA V C+L E C+ A+A E Sbjct: 245 IYREVKGLTSSELEQVMLKATRPDDTPVKGKHVERLVGVTYQISPRY-------------DIYDAVLRKLWGKMAEKDWRTTIKSLYILHRFSADGAPEHAAALKARLRELRRTRDPKRKDKYFNSKQLLAGESNPENIKFRAFMSRYAHYVLLRAQCFGGLFDEISQEPKLDKKKPPKAITTTSLRSEHLEAAAMLLKAGVACQLKEDE-------ACENTAIAAE 451
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: A0A1E7FBW9_9STRA (ENTH domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBW9_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 4.400e-18 Identity = 74/211 (35.07%), Postives = 97/211 (45.97%), Query Frame = 1 Query: 571 ILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHFPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVK--DVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSELT---SLDETSSAAHL------LRA--LEKTELLIKAAVLCKLDSKE 1164 + REVKG SS++E+ +LKATRPD+ P K KH E L+ T GR Y VL KLW +MAEKDWRT KALY+ LRR DPK K+F + ++ D ++ F+G YA V LR Q E+ S D+ AA LR+ L+ +LL+K V C L + E Sbjct: 29 LFREVKGLTSSELEQVMLKATRPDDTPVKGKHAERLVGVTYQI---------SGRYDI---YDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPDHAPALKARVRELRRTRDPKRKGKFFSSKLLQAGDDKPESAKFRAFMGRYAHYVLLRAQCFGGMFDEIAAPPSADKKKKAAPKPITSTSLRSDHLDAAKLLLKTGVACVLKNGE 227
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: A0A7R9ZH59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH59_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 8.700e-18 Identity = 66/174 (37.93%), Postives = 83/174 (47.70%), Query Frame = 1 Query: 571 ILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHFPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVK--DVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSELTSLDETSSA 1086 + REVKG SS++E+ +LKAT+P++ P K KHVE L+ T GR Y VL KLW +MAEKDWRT KALYV LRR DPK KYF + + D S +Y FL YA V LR Q +E++ D S+A Sbjct: 74 VYREVKGLTSSELEQVMLKATQPNDAPVKGKHVERLVGVTYQI---------SGRYDI---YDAVLRKLWSKMAEKDWRTKIKALYVLHRFSADGAPDHQAALKARLRELRRTRDPKRKEKYFNSKQLLGGDASPENAKYRAFLARYAHYVLLRAQCFGGMFNEISG-DPASAA 234
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Match: A0A448ZTH1_9STRA (ENTH domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTH1_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 2.890e-17 Identity = 78/231 (33.77%), Postives = 101/231 (43.72%), Query Frame = 1 Query: 571 ILREVKGTFSSDMEKTLLKATRPDNNPAKRKHVELLLKATEHFPMYMGEGWEDGRVQRDGPYWMVLHKLWRRMAEKDWRTVAKALYVXXXXXXXXXXXXXXXXXXXXASLRREFDPKTGTKYFRRRAVK--DVSSNGLQYAEFLGNYADLVFLRVQTLSPGCSELT--SLDETSS--------AAHLLRA--LEKTELLIKAAVLCKLDSKEELIDNDVTCDAAALALEDL 1221 + REVKG SS++E+ +LKATRPD+ P K KH E L+ T R Y VL KLW +MAEKDWRT KALY+ LRR DPK K+F + + D S +Y FLG YA V LR Q E+ S +T + L+A L+ +LL++ + C L EE N+ T A DL Sbjct: 219 LYREVKGLTSSELEQVMLKATRPDDTPVKGKHAERLVGVTYQISA------------RYDIYDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPEHAPALKARVRELRRTRDPKRKGKFFSSKLLLAGDTSEETAKYRAFLGRYAHYVLLRAQCFGGMFDEIAAPSAKDTKKKKAAPKPITSTSLKADHLDAAKLLLETGLACVLKKGEE---NENTALAVERVASDL 434 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1004.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1004.9.1 >prot_C-australica_Contig_1004.9.1 ID=prot_C-australica_Contig_1004.9.1|Name=mRNA_C-australica_Contig_1004.9.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=343bp MLSPEAIYSQMKAKREEFGERVTGAAHKAEKILREVKGTFSSDMEKTLLKback to top mRNA from alignment at C-australica_Contig_1004:12798..16058+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1004.9.1 ID=mRNA_C-australica_Contig_1004.9.1|Name=mRNA_C-australica_Contig_1004.9.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3261bp|location=Sequence derived from alignment at C-australica_Contig_1004:12798..16058+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1004:12798..16058+ >mRNA_C-australica_Contig_1004.9.1 ID=mRNA_C-australica_Contig_1004.9.1|Name=mRNA_C-australica_Contig_1004.9.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1029bp|location=Sequence derived from alignment at C-australica_Contig_1004:12798..16058+ (Chrysoparadoxa australica CS_1217)back to top |