mRNA_C-australica_Contig_1004.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1004.4.1
Unique NamemRNA_C-australica_Contig_1004.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1004.4.1 vs. uniprot
Match: A0A7S2R7Y6_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R7Y6_9STRA)

HSP 1 Score: 457 bits (1177), Expect = 3.220e-145
Identity = 262/488 (53.69%), Postives = 333/488 (68.24%), Query Frame = 1
Query:   73 VPNYVVVPMPALSPTMEAGTITDWKMAPGDEVAPGDVLCEVETDKATVAYEMQDDGVLAKILAPAGGGELKVGSPMAITVDDMEDYQLFLAADEQGKIMVPGEVSSGAEPVEASAAAPAAAGTQAAAAVVEGRTVPLEYLFSPAARHMAQSKGVDASSIAGTGKGGRITKSDLVHALNSGKTFPTLG----SAPAVAAASDHATNPAVAXXXXXXXXXXXXXXXXAVPSATASPPAAAPQPRSHLMNFDFGPVSSKGSFIDIPASQITKVIARRLTESKATVPHYYVSVECEIDSLLGLRKKLATEADTKVSVNDLVIKSAALALRDVPEVNASW--SPKGRKINDSIDVSVAVATPAGLITPIVTDVDKKGLAEINSNVVDLAARAKDNKLKPEEFQGGTFTISNLGMFGINEFSAVINPPQSSIMAVGGGVRRVLPGKGVDADGCRNPPRVATVMTTRLSCDRRVVDEAVAGQFLQAFQFYVQSPS 1518
            VP++ VV MPALSPTME G+I+ W   PGD +  G+ L EVETDKA V +E QDD VLAK+L PAGG E  VG P+AITV D   ++ F  AD  G + +P   S+G  P   SA     +   A    VEGR V  E+L  PAA H+A+S+G+DA+++AG+GKGGRITK D+++AL SG TFP L     S PA+ AA++ +T                     A P+A  +P A++  P    ++    PV+    F D PAS + KVIARRLTESKATVPH YV++E E+D+LL  RK L  E D  VSVNDLVI++ ALALRDVPE NAS+  +   ++ NDSIDVSVAVATP GLITPIVT VD++GL++I+S V DLA RA++ KL PEE+QGGTFT+SNLGMFGI+EFSAVINPPQ+ IMA+GGGV+RV+      AD   + PRVAT MT ++SCDRRV+DEA A Q+LQAF+ YV+ P+
Sbjct:   35 VPDFSVVHMPALSPTMERGSISSWAKQPGDSIEAGETLAEVETDKAVVGFEYQDDAVLAKVLDPAGGTEFTVGDPIAITVVDHAAFEAFQTADAAGLVSLP---SAGNTPAAVSATXXXXSTASAPTGPVEGRQVTDEFLLMPAAAHLARSRGIDATALAGSGKGGRITKGDILNALASGMTFPALATGAVSRPALTAAAEAST---------------------AAPAA--APLASSTVPTGETLSMPATPVTD-APFEDAPASSMRKVIARRLTESKATVPHLYVAMESELDALLRFRKYLKDECDVSVSVNDLVIRAVALALRDVPEANASFDAAQSAKRFNDSIDVSVAVATPTGLITPIVTGVDRRGLSDISSAVRDLAGRAQEGKLMPEEYQGGTFTVSNLGMFGISEFSAVINPPQACIMAIGGGVKRVV------ADSMDSEPRVATSMTVKMSCDRRVIDEATASQYLQAFRSYVEEPT 489          
BLAST of mRNA_C-australica_Contig_1004.4.1 vs. uniprot
Match: A0A835ZCE2_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCE2_9STRA)

HSP 1 Score: 457 bits (1176), Expect = 5.290e-141
Identity = 287/504 (56.94%), Postives = 333/504 (66.07%), Query Frame = 1
Query:    7 YTRRQTPGGRSVSDLAHRGL--SGVPNYVVVPMPALSPTMEAGTITDWKMAPGDEVAPGDVLCEVETDKATVAYEMQDDGVLAKILAPAGGGELKVGSPMAITVDDMEDYQLFLAADEQGKI-MVPGEVSSGAEPVEASAAAPAAAGTQAAAAVVE---GRTVPLEYLFSPAARHMAQSKGVDASSIAGTGKGGRITKSDLVHALNSGKTFPTLGSAPAVAAASDHATNPAVAXXXXXXXXXXXXXXXXAVPSATASPPAAAPQPRSHLMNFDFGPVSSKGSFIDIPASQITKVIARRLTESKATVPHYYVSVECEIDSLLGLRKKLATEADTKVSVNDLVIKSAALALRDVPEVNASWSPK--GRKINDSIDVSVAVATPAGLITPIVTDVDKKGLAEINSNVVDLAARAKDNKLKPEEFQGGTFTISNLGMFGINEFSAVINPPQSSIMAVGGGVRRVLPGKGVDADGCRNPPRVATVMTTRLSCDRRVVDEAVAGQFLQAF 1494
            Y R+Q   G    +  HR    S  P++ VV MPALSPTME GTIT W   PG  +APGDVLC+VETDKATVA+E+Q+DGVLAKIL   GGGE+KVGSP+A+TV+D   Y  F  AD  G +    GE +  A   ++   APAA               RTVP E+ +SPAARH+AQSKG+D  S+AG+G+GGR+TKSDL+ AL SG  FP LG      A    AT PA A     XXXXXXXXXXX                                   DIPA+ I KVIA+RL +SKATVPH YVS ECE+D+LL LRK+LA     KVSVNDLVI++AALALRDVPE NA WS +     +  ++DVSVAVATP GLITPIVT   ++GL  I++ V DLA RAK+ KLKPEEFQGGTFTISNLGMFGI EFSAVINPPQ+ IMAVGGGVRRV+PG    A G R PPRVATVMT +LS DRRVVDEAVA QFLQ F
Sbjct:   55 YLRQQ---GLQDGNAVHRRWLSSEAPSFTVVNMPALSPTMETGTITKWHAQPGTALAPGDVLCDVETDKATVAFEVQEDGVLAKILVQEGGGEVKVGSPVAVTVEDEAAYDAFTKADAAGSLPYFSGEDAPSA--TDSQPQAPAAXXXXXXXXXXXXXANRTVPEEFAYSPAARHLAQSKGIDIVSLAGSGRGGRVTKSDLIKALASGTEFPKLG------AGRHAATEPAAAAAPTGXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXAADHTDIPANNIRKVIAKRLAQSKATVPHLYVSAECELDALLALRKELAARHGAKVSVNDLVIRAAALALRDVPEANAQWSARDGAAALQRAVDVSVAVATPTGLITPIVTRAAERGLLNISAAVRDLAGRAKEGKLKPEEFQGGTFTISNLGMFGIAEFSAVINPPQACIMAVGGGVRRVVPGARDAATGARAPPRVATVMTAKLSADRRVVDEAVAAQFLQQF 543          
BLAST of mRNA_C-australica_Contig_1004.4.1 vs. uniprot
Match: A0A7S2ALJ9_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALJ9_9STRA)

HSP 1 Score: 443 bits (1140), Expect = 3.210e-139
Identity = 261/492 (53.05%), Postives = 325/492 (66.06%), Query Frame = 1
Query:   82 YVVVPMPALSPTMEAGTITDWKMAPGDEVAPGDVLCEVETDKATVAYEMQDDGVLAKILAPAGGGELKVGSPMAITVDDMEDYQLFLAADEQGKIMVP---GEVSSGA-EPVEASAAAPAAAGTQAAAAVVEGRTVPLEYLFSPAARHMAQSKGVDASSIAGTGKGGRITKSDLVHALNSGKTFPTLGS--APAVAAASDHATNPAVAXXXXXXXXXXXXXXXXAVPSATASPPAAAPQPRSHLMNFDFGPV--SSKGSFIDIPASQITKVIARRLTESKATVPHYYVSVECEIDSLLGLRKKLATEADTKVSVNDLVIKSAALALRDVPEVNASWSPKGRKI--NDSIDVSVAVATPAGLITPIVTDVDKKGLAEINSNVVDLAARAKDNKLKPEEFQGGTFTISNLGMFGINEFSAVINPPQSSIMAVGGGVRRVLPGKGVDADGCRNPPRVATVMTTRLSCDRRVVDEAVAGQFLQAFQFYVQSPSQTM 1527
            YV V MPALSPTME+GTI +W   PG+E+A GDVLC+VETDKAT+A+EMQDD VLAK L PAG   + +G+ +AITVDDM  Y+ FLAAD  G+I +    G  + GA + VE +    ++     AA +   RTV  E+L +PAARHM++SKG+D   +AGTGKGGRITK D++HA+N G T P L S  AP+VAA     T+PA                    PS +++P              D  P   +S   + D PAS + KVIA RLT+SKA  PH YVS+E  +D ++ LRK L  E D  VSVNDL+I+ A LALRDVPE NASW  K + +  N ++D+SVAVATP GL+TPIVT VD KGL EIN  V DLA RA+D KL PEE+QGG+FTISNLGMFG++EFSA+IN PQ+ IMAVGGG RR++  K  D +G      + TVMT RLSCD RVVD AVA QFLQAFQ Y++ P  T+
Sbjct:   77 YVTVVMPALSPTMESGTIAEWSKQPGEEIAAGDVLCQVETDKATMAFEMQDDAVLAKQLVPAGDESINIGTAVAITVDDMAAYEAFLAADAAGEISIDANDGPAAGGAVDEVETTTGTVSSE----AAMIASTRTVADEFLLTPAARHMSESKGLDVRGLAGTGKGGRITKGDVIHAINEGVTLPLLASSSAPSVAAV----TSPA--------------------PSVSSTPAXXXXXXXXXXXMMDLPPAECTSGAGYSDSPASGMRKVIASRLTQSKAEAPHAYVSIEARLDPIMKLRKTLK-EGDVNVSVNDLIIRCAGLALRDVPEANASWDAKTQSVVTNPNVDISVAVATPTGLMTPIVTGVDGKGLGEINGAVRDLATRARDGKLMPEEYQGGSFTISNLGMFGVSEFSAIINMPQACIMAVGGGERRLVQKK--DEEGLS----IETVMTARLSCDSRVVDSAVAAQFLQAFQGYMEQPKLTV 533          
BLAST of mRNA_C-australica_Contig_1004.4.1 vs. uniprot
Match: A0A6H5L3X9_9PHAE (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X9_9PHAE)

HSP 1 Score: 437 bits (1123), Expect = 1.420e-136
Identity = 263/506 (51.98%), Postives = 334/506 (66.01%), Query Frame = 1
Query:   16 RQTPGGRSVSDLAHRGLSGVPNYVVVPMPALSPTMEAGTITDWKMAPGDEVAPGDVLCEVETDKATVAYEMQDDGVLAKILAPAGGGELKVGSPMAITVDDMEDYQLFLAADEQGKIMVPG------EVSSGAEPVEASAAAPAAAGTQAAAAVVEGRTVPLEYLFSPAARHMAQSKGVDASSIAGTGKGGRITKSDLVHALNSGKTFPTLGSAPAVAAASDHATNPAVAXXXXXXXXXXXXXXXXAVPSATASPPAAAPQPRSHLMNFDFGPVSSKGSFIDIPASQITKVIARRLTESKATVPHYYVSVECEIDSLLGLRKKLATEADTKVSVNDLVIKSAALALRDVPEVNASWSPKGRKINDSIDVSVAVATPAGLITPIVTDVDKKGLAEINSNVVDLAARAKDNKLKPEEFQGGTFTISNLGMFGINEFSAVINPPQSSIMAVGGGVRRVLPGKGVDADGCRNPPRVATVMTTRLSCDRRVVDEAVAGQFLQAFQFYVQSP 1515
            R T  G  +     R L+   ++ VV MPALSPTME+GT+T+W  +PGDE++ GDV+C+VETDKATVA+++QDDGVLA+I++ AG GE+ VGSP+A+ V+D + Y  F+ AD  G++                                   + +  R+VP  +LFSPAARHMAQSKG+DASS+ GTGKGGRITK+DLV A+  G  FP    A A AA+S         XXXXXXXXXXXX     VPS                        SS G F+D PA+ I K+ A+RLT+SKA VPH YVS+ CE+D L+  RK L  E D KVSVND++I+SAALALRDVPE NA WS   R+ ++SID+SVAVATP GLITPIVTD D++GL+ I+  V DLA RA+D +LKPEEFQGG+FT+SNLGMFGINEFSAVIN PQ+ I+AVGGG  +V PG+        + PRV + +T RLS DRRVVDEA+A Q LQ+F+ Y+++P
Sbjct:   69 RATGFGMLLPRQTARALTSGVDFTVVNMPALSPTMESGTVTEWHKSPGDELSAGDVICDVETDKATVAFDVQDDGVLARIISEAGSGEVSVGSPVAVIVEDGDAYAAFVKADAAGEVDFAALGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNLPERSVPEAFLFSPAARHMAQSKGIDASSLEGTGKGGRITKTDLVLAMAKGVEFP----AAAKAASSQXXXXXXXXXXXXXXXXXXXXVAPPVVPS------------------------SSSGDFVDEPANNIKKITAKRLTQSKAEVPHLYVSMACEVDGLMAFRKTLQKEHDVKVSVNDIIIRSAALALRDVPEANAKWSGGARQSSESIDISVAVATPTGLITPIVTDADQRGLSNISGKVRDLATRARDRQLKPEEFQGGSFTVSNLGMFGINEFSAVINMPQACILAVGGGAPKVKPGREAG-----DKPRVCSEVTVRLSADRRVVDEAIAAQLLQSFKHYMETP 541          
BLAST of mRNA_C-australica_Contig_1004.4.1 vs. uniprot
Match: A0A7S2LCD3_9STRA (Acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LCD3_9STRA)

HSP 1 Score: 417 bits (1072), Expect = 4.300e-130
Identity = 265/497 (53.32%), Postives = 334/497 (67.20%), Query Frame = 1
Query:   34 RSVSDLAHRGLSG-VPNYVVVPMPALSPTMEAGTITDWKMAPGDEVAPGDVLCEVETDKATVAYEMQDDGVLAKILAPAGGGELKVGSPMAITVDDMEDYQLFLAADEQGKIMVPGEVSSGAEPVEASAAAPAAAGTQAAAAVVEGRTVPLEYLFSPAARHMAQSKGVDASSIAGTGKGGRITKSDLVHALNSGKTFPTLGSAPAVAAASDHATNPAVAXXXXXXXXXXXXXXXXAVPSATASPPAAAPQPRSHLMNFDFGPVSSKGSFIDIPASQITKVIARRLTESKATVPHYYVSVECEIDSLLGLRKKLATEADTKVSVNDLVIKSAALALRDVPEVNASWSPKGRKI--NDSIDVSVAVATPAGLITPIVTDVDKKGLAEINSNVVDLAARAKDNKLKPEEFQGGTFTISNLGMFGINEFSAVINPPQSSIMAVGGGVRRVLPGKGVDADGCRNPPRVATVMTTRLSCDRRVVDEAVAGQFLQAFQFYVQSP 1515
            R  S  A R LS  +P++ VV +PALSPTME+G I DWK+  G    PGDVLCEVETDKATV +E QDDGVLAKIL P+G  ++KVG+P+ I V+D +D   F  AD      V  +VSS  +   A  A+     T+A       R +  +Y+ SPAARH++QSKG+DA+ + GTGKGGR+TK D++  L+S    P +                AV XXXXXXXXXXXXXXXXA      S  A  P+P               GSF D+P + + KVIA+RLTESK  VPH+Y SVE E+D +L LRKKL  + + KVSVNDL+IKS+ALALRD+  VNA+++ K  +I  +D +D+SVAVATP GLITPIVT  DK+GL+ I+S V DLA RA+D KLKPEE+QGGTFTISNLGMFGI+EFSAVINPPQ++I+AVGGG  R++P   V+    + PP+V T+MT RLS DRRVVDEA A  F++AFQ Y+  P
Sbjct:   15 RRQSQSAWRALSSSLPSHEVVGLPALSPTMESGNIADWKIEEGQAFGPGDVLCEVETDKATVDFEAQDDGVLAKILKPSGSQDIKVGAPVCIVVEDEDDVASF--ADYN----VLDDVSSADDETPAVVASSDTV-TEAVVTPSPSRDIEDQYILSPAARHLSQSKGLDATVLTGTGKGGRVTKGDVLLNLDSLPPLPVVS---------------AVXXXXXXXXXXXXXXXXXAATPVYLSE-AEVPEPA--------------GSFEDVPNNNMRKVIAKRLTESKRDVPHFYTSVEIELDEVLALRKKLVNDHEVKVSVNDLIIKSSALALRDISAVNATYNDKKSEIVPSDDVDISVAVATPTGLITPIVTGADKRGLSSISSCVKDLATRARDGKLKPEEYQGGTFTISNLGMFGIDEFSAVINPPQAAILAVGGGSPRIIPTPYVEGAEEQEPPKVKTIMTARLSADRRVVDEATAAVFMKAFQEYLSKP 474          
BLAST of mRNA_C-australica_Contig_1004.4.1 vs. uniprot
Match: A0A7S4SV80_9STRA (Acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SV80_9STRA)

HSP 1 Score: 410 bits (1054), Expect = 3.720e-126
Identity = 242/496 (48.79%), Postives = 323/496 (65.12%), Query Frame = 1
Query:   64 LSGVPNYVVVPMPALSPTMEAGTITDWKMAPGDEVAPGDVLCEVETDKATVAYEMQDDGVLAKILAPAGGG-ELKVGSPMAITVDDMED---YQLFLAADEQGKIMVPGEVSSGAEPVEASAAAPAAAGTQAAAAVVEGRTVPLEYLFSPAARHMAQSKGVDASSIAGTGKGGRITKSDLVHALNSGKTFPTLGSAPAVAAASDHATNPAVAXXXXXXXXXXXXXXXXAVPSATASPPAAAPQPRSHLMNFDFGPVSSKGSFIDIPASQITKVIARRLTESKATVPHYYVSVECEIDSLLGLRKKLATEADTKVSVNDLVIKSAALALRDVPEVNASWSPK--GRKINDSIDVSVAVATPAGLITPIVTDVDKKGLAEINSNVVDLAARAKDNKLKPEEFQGGTFTISNLGMFGINEFSAVINPPQSSIMAVGGGVRRVLPGKGVDADGCRNPPR--VATVMTTRLSCDRRVVDEAVAGQFLQAFQFYVQSPSQTM 1527
            LS  P + + PMPALSPTME GTI+ W  + G+E + GD+LCE+ETDKATV +E QDDGVLAKIL       +L +G P+ + V++ ++   ++ F+  D  G     G  +  A   EA AAA A   T  A +VV  R V  E++  P+ARH++QS+GVDA+ + G+GKGGR+TK D++ AL +G   P L S+   +A  D    PA A                A P+  AS P  A  P           +S++GS+ D+P + + KVIA+RLTESK  VPH+Y S+E E+D +L LRK L ++ D KVSVNDL+I+S+ALALRDVPEVNA+   K    +  ++ID+S+AVATP GLITPIV   D+KGL++I ++V DLA RA++ KLKPEE+QGGTF ISNLGMFGI+EFSAVINPPQ++I+AVGGG +R++P   VD     + P+  + TVMT RLS DRRVVDEA A  FL AF+ Y+  P   M
Sbjct:  110 LSSYPPHTLFPMPALSPTMETGTISKWNKSEGEEFSAGDILCEIETDKATVDFEAQDDGVLAKILREGSNAVDLPIGVPICVVVEEADELAAFKDFVLDDGAG-----GAAAPTAAQEEAPAAASAPTPTAQAESVVN-RDVADEFVLMPSARHLSQSRGVDATVLVGSGKGGRVTKGDVLAALANGTEMPPLTSSVLASAPVD---TPAAATQAA------------AAPAKAASSPVVATIPE----------ISTQGSYEDVPNNNMRKVIAKRLTESKRDVPHFYTSMEVELDEVLSLRKMLVSKHDVKVSVNDLIIRSSALALRDVPEVNATIDSKTGNLRARENIDISIAVATPTGLITPIVPHTDQKGLSDITNSVRDLAGRAREGKLKPEEYQGGTFCISNLGMFGIDEFSAVINPPQAAILAVGGGTKRIVPAPYVDGVAKEDQPKPVIRTVMTARLSADRRVVDEATAALFLSAFKHYLSKPHLLM 574          
BLAST of mRNA_C-australica_Contig_1004.4.1 vs. uniprot
Match: A0A812V1C5_SYMMI (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V1C5_SYMMI)

HSP 1 Score: 406 bits (1044), Expect = 7.130e-126
Identity = 239/482 (49.59%), Postives = 310/482 (64.32%), Query Frame = 1
Query:   91 VPMPALSPTMEAGTITDWKMAPGDEVAPGDVLCEVETDKATVAYEMQDDGVLAKILAPAGGGELKVGSPMAITVDDMEDYQLFLAADEQGKIMVPGEVSSGAEPVEASAAAPAAAGTQAAAAVVEGRTVPLEYLFSPAARHMAQSKGVDASSIAGTGKGGR-ITKSDLVHALNSGKTFPTLGSAPAVAAASDHATNPAVAXXXXXXXXXXXXXXXXAVPSATASPPAAAPQPRSHLMNFDFGPVSSKGS-FIDIPASQITKVIARRLTESKATVPHYYVSVECEIDSLLGLRKKLATEADTKVSVNDLVIKSAALALRDVPEVNASWSP-KGRK-INDSIDVSVAVATPAGLITPIVTDVDKKGLAEINSNVVDLAARAKDNKLKPEEFQGGTFTISNLGMFGINEFSAVINPPQSSIMAVGGGVRRVL---PGKGVDADGCRNPPRVATVMTTRLSCDRRVVDEAVAGQFLQAFQFYVQSP 1515
            +PMP+LSPTM  GTI+ W  APG+ +  GD+LC+VETDKA+V +E+QDDGVLAKIL  AGG E++ G P+A+ V+D  DYQ FL         +P +    A P  A++   A + T ++AA      V L    SPAARHM QS+ +D S++ G+ KGGR ITK D++ A+ +G   P         A++     PA A                   +A ASPP   PQ  + +      P S+ G  ++D+P S + KVIA+RL+ESK TVPH Y ++ECEID LL +RK L  +    VSVND+VIKS A+ALRDVPE N  W P +GR   ND++D+SVAVATP GLITPI+T  D+ GL+ INS V DLA RA+D KLKP+E+QGGTFTISNLG+FGI+ FSAVINPPQ+ I+AVGGG+ RV+   PGK          PR+ T MT +LS DRRVVDEA A QFLQ F++Y+ +P
Sbjct:   50 LPMPSLSPTMTHGTISSWNKAPGEALKAGDILCDVETDKASVGFEVQDDGVLAKILVDAGGAEVQCGQPIALMVEDDADYQTFLK--------LPADAYPVAVPAAAASPPAAPSHTPSSAAPSFAGHVQL----SPAARHMVQSRSLDVSAVHGSSKGGRVITKGDVIQAVKAGTARP--------GASTQTRATPATAV------------------AAVASPPTPIPQTAATVPATVQDPSSNIGGLYVDVPNSNMRKVIAKRLSESKQTVPHLYTTIECEIDDLLAMRKALKKDFGVNVSVNDVVIKSVAMALRDVPECNGKWVPAEGRPAFNDAVDISVAVATPNGLITPILTSADQLGLSAINSKVKDLATRARDGKLKPQEYQGGTFTISNLGLFGISSFSAVINPPQACILAVGGGIERVVAPAPGK--------EQPRIVTTMTVQLSSDRRVVDEATASQFLQVFKYYLSNP 485          
BLAST of mRNA_C-australica_Contig_1004.4.1 vs. uniprot
Match: A0A7S2XXU4_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXU4_9STRA)

HSP 1 Score: 391 bits (1005), Expect = 1.810e-120
Identity = 243/476 (51.05%), Postives = 307/476 (64.50%), Query Frame = 1
Query:   91 VPMPALSPTMEAGTITDWKMAPGDEVAPGDVLCEVETDKATVAYEMQDDGVLAKILAPAGGGELKVGSPMAITVDDMEDYQLFLAADEQGKIMVPGEVSSGAEPVEASAAAPAAAGTQAAAAVVEGRTVPLEYLFSPAARHMAQSKGVDASSIAGTGKGGRITKSDLVHALNSGKTFPTLGSAPAVAAASDHATNPAVAXXXXXXXXXXXXXXXXAVPSATASPPAAAPQPRSHLMNFDFGPVSSKGS-FIDIPASQITKVIARRLTESKATVPHYYVSVECEIDSLLGLRKKLATEADTKVSVNDLVIKSAALALRDVPEVNASWSPKGRKINDSIDVSVAVATPAGLITPIVTDVDKKGLAEINSNVVDLAARAKDNKLKPEEFQGGTFTISNLGMFGINEFSAVINPPQSSIMAVGGGVRRVLPGKGVDADGCRNPPRVATVMTTRLSCDRRVVDEAVAGQFLQAFQFYVQSP 1515
            + MPALSPTME+GT+  W +  G E  PGD LCEVETDKATVA+E+Q+               +KVG  +A+ V+D + +  F  A  +    +  ++S GA    AS+AA   A  QA +      +    +L  PAAR MA+S G+DAS +AGTG+GGR+TK D+V AL +G   P L       A   H T+PA A       XXXXXXXXX       +P +++          D  P+    S F DIPA+ I KV A+RLTESKATVPHYYVS E EID+ L LRK +A E + K SVNDLVI+SAALALRD  EVNA W+       +++D+S+AVATP GLITPIVT+ DKKGL +I+ NV DLA RA+DNKL PEEF GGTFTISNLGMFGI+EFSAVIN PQ++IMAVG G R+V+P   V+      PPRVAT+MT  LSCDRRV++EA AG+F+ +F+ Y+  P
Sbjct:   15 IAMPALSPTMESGTVAKWLVQEGGEFGPGDALCEVETDKATVAFEVQEXXXXXXXXXXXXXX-VKVGEMVALAVEDADQFAAFQKAGPEALANI--DLSGGAS---ASSAAVEDASPQAGSXXXXXXSASPSFLM-PAARFMAESMGLDASGLAGTGRGGRVTKGDVVEALEAGIKLPPL-------AKPAHTTSPAAAAAGEVPAXXXXXXXXXXXXXXXXTPASSS--------TVDLPPLQESSSPFEDIPANNIKKVTAKRLTESKATVPHYYVSTEVEIDAALKLRKDMAKEHEVKFSVNDLVIRSAALALRDNAEVNAKWNGSEVVPEETVDISIAVATPNGLITPIVTNADKKGLTDISGNVRDLATRARDNKLAPEEFMGGTFTISNLGMFGISEFSAVINLPQAAIMAVGTGARKVVPSPRVEGQEEIPPPRVATMMTATLSCDRRVINEAAAGKFMNSFKHYLSQP 468          
BLAST of mRNA_C-australica_Contig_1004.4.1 vs. uniprot
Match: D7FM36_ECTSI (Dihydrolipoamide S-acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM36_ECTSI)

HSP 1 Score: 412 bits (1060), Expect = 7.010e-120
Identity = 253/500 (50.60%), Postives = 316/500 (63.20%), Query Frame = 1
Query:   16 RQTPGGRSVSDLAHRGLSGVPNYVVVPMPALSPTMEAGTITDWKMAPGDEVAPGDVLCEVETDKATVAYEMQDDGVLAKILAPAGGGELKVGSPMAITVDDMEDYQLFLAADEQGKIMVPGEVSSGAEPVEASAAAPAAAGTQAAAAVVEGRTVPLEYLFSPAARHMAQSKGVDASSIAGTGKGGRITKSDLVHALNSGKTFPTLGSAPAVAAASDHATNPAVAXXXXXXXXXXXXXXXXAVPSATASPPAAAPQPRSHLMNFDFGPVSSKGSFIDIPASQITKVIARRLTESKATVPHYYVSVECEIDSLLGLRKKLATEADTKVSVNDLVIKSAALALRDVPEVNASWSPKGRKINDSIDVSVAVATPAGLITPIVTDVDKKGLAEINSNVVDLAARAKDNKLKPEEFQGGTFTISNLGMFGINEFSAVINPPQSSIMAVGGGVRRVLPGKGVDADGCRNPPRVATVMTTRLSCDRRVVDEAVAGQFLQAFQFYVQSP 1515
            R T  G  +     R L+   ++ VV MPALSPTME+GT+T+W  +PGDE++ GDV+C+VETDKATVA+++QDDGVLA+I++ AG GE+ VGSP+A+ V+D + Y  F+ AD  G                                                     +SKG+DASS+ GTGKGGRITK+DLV AL  G  FP      A  AAS  A      XXXXXXXXXXXXXXXX  PS                        SS G F+D PA+ I K+ A+RLT+SKA VPH YVS+ CE+D L+  RK L  E D KVSVND++I+SAALALRDVPE NA WS   R+  +SID+SVAVATP GLITPIVTD D++GL+ I+  V DLA RA+D +LKPEEFQGG+FT+SNLGMFGINEFSAVIN PQ+ I+AVGGG  +V PG+        + PRV + +T RLS DRRVVDEA+A Q LQ+F+ Y+++P
Sbjct:  845 RATGIGMQLPRQTARALTSGVDFTVVNMPALSPTMESGTVTEWHKSPGDELSAGDVICDVETDKATVAFDVQDDGVLARIISEAGSGEVSVGSPVAVIVEDADAYAAFVKADAAG-----------------------------------------------------ESKGIDASSLEGTGKGGRITKADLVLALAKGVEFPA-----AAKAASSQAXXXXXXXXXXXXXXXXXXXXXXXXPS------------------------SSSGDFVDEPANNIKKITAKRLTQSKAEVPHLYVSMACEVDGLMAFRKALQKEHDVKVSVNDIIIRSAALALRDVPEANAKWSGGARQSGESIDISVAVATPTGLITPIVTDADQRGLSNISGKVRDLATRARDRQLKPEEFQGGSFTVSNLGMFGINEFSAVINMPQACILAVGGGAPKVKPGREAG-----DKPRVCSEVTVRLSADRRVVDEAIAAQLLQSFKHYMETP 1257          
BLAST of mRNA_C-australica_Contig_1004.4.1 vs. uniprot
Match: A0A7S2RBN8_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RBN8_9STRA)

HSP 1 Score: 379 bits (973), Expect = 7.890e-116
Identity = 241/486 (49.59%), Postives = 313/486 (64.40%), Query Frame = 1
Query:   58 RGLSGVPNYVVVPMPALSPTMEAGTITDWKMAPGDEVAPGDVLCEVETDKATVAYEMQDDGVLAKILAPAGGGELKVGSPMAITVDDMEDYQLFLAADEQGKIMVPGEVSSGAEPVEASAAAPAAAGTQAAAAVVEGRTVPLEYLFSPAARHMAQSKGVDASSIAGTGKGGRITKSDLVHALNSGKTFPTLGSAPAVAAASDHATNPAVAXXXXXXXXXXXXXXXXAVPSATASPPAAAPQPRSHLMNFDFGPVSSKGSFIDIPASQITKVIARRLTESKATVPHYYVSVECEIDSLLGLRKKLATEADTKVSVNDLVIKSAALALRDVPEVNASWSPKGRKINDSIDVSVAVATPAGLITPIVTDVDKKGLAEINSNVVDLAARAKDNKLKPEEFQGGTFTISNLGMFGINEFSAVINPPQSSIMAVGGGVRRVLPGKGVDADGCRNPPRVATVMTTRLSCDRRVVDEAVAGQFLQAFQFYVQSP 1515
            R LS  P + VV MPALSPTME GTI+ WK+  G    PGDVL E+ETDKAT+ +E QD+G+LA+IL P G  E+ VG+P+ I V++  D   F  A+ Q   +V   V+   E V           T AA A V+ R V +E++ SPAARH++QSKG+DA+ +AGTGKGGR+TK DL+ AL SG + PTL   P                XXXXXXXXXXX       +A   P  A P             + ++GSF D+P + + KVIA+RLTESK+TVPH+Y +V+  +D +L LRK        K+SVND+++++AALALRDVPEVN S         D+IDVS+AVATP GLITPIV +    GL +I++ + DLA RA++NKLKPEE+QGGTF ISNLGMFGI EFSAVINPPQ++I+AVGGG+  ++P K       +N P++ T+MT RLS DR VVDE  A  FLQ F+ Y+ +P
Sbjct:   43 RSLSSYPPHEVVEMPALSPTMEMGTISSWKVEEGGSFGPGDVLAEIETDKATMDFEAQDEGILARILHP-GMEEIPVGTPIGIVVEEESDVSAF--ANYQ---VVVAAVAVAEEEVT----------TIAAPAAVQ-RQVGVEHVLSPAARHISQSKGLDATGLAGTGKGGRVTKGDLLQALASGVSMPTLSQTPTX--------------XXXXXXXXXXXQAAHTAVAAAVVPVKAVPVEM----------IMTEGSFEDVPNNNMRKVIAKRLTESKSTVPHFYTTVQIPLDEVLKLRKTFPV----KISVNDVIVRAAALALRDVPEVNQS--------EDNIDVSIAVATPGGLITPIVPNTHTLGLHQISTKITDLATRARENKLKPEEYQGGTFCISNLGMFGITEFSAVINPPQAAILAVGGGIPTIVPSKDQ-----KNKPQLQTLMTARLSADRSVVDEPTASLFLQIFRRYLTNP 470          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1004.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2R7Y6_9STRA3.220e-14553.69Dihydrolipoamide acetyltransferase component of py... [more]
A0A835ZCE2_9STRA5.290e-14156.94Dihydrolipoamide acetyltransferase component of py... [more]
A0A7S2ALJ9_9STRA3.210e-13953.05Dihydrolipoamide acetyltransferase component of py... [more]
A0A6H5L3X9_9PHAE1.420e-13651.98Dihydrolipoamide acetyltransferase component of py... [more]
A0A7S2LCD3_9STRA4.300e-13053.32Acetyltransferase component of pyruvate dehydrogen... [more]
A0A7S4SV80_9STRA3.720e-12648.79Acetyltransferase component of pyruvate dehydrogen... [more]
A0A812V1C5_SYMMI7.130e-12649.59Dihydrolipoamide acetyltransferase component of py... [more]
A0A7S2XXU4_9STRA1.810e-12051.05Dihydrolipoamide acetyltransferase component of py... [more]
D7FM36_ECTSI7.010e-12050.60Dihydrolipoamide S-acetyltransferase n=1 Tax=Ectoc... [more]
A0A7S2RBN8_9STRA7.890e-11649.59Dihydrolipoamide acetyltransferase component of py... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1004contigC-australica_Contig_1004:4756..12571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FM36
PFAMs2-oxoacid_dh,Biotin_lipoyl,Mlh1_C,PAS,Pkinase
Model size3768
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02742,RC02857
KEGG koko:K00627,ko:K04371,ko:K04412
KEGG ReactionR00209,R02569
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04390,ko04391,ko04392,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04390,map04391,map04392,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00307,M00683,M00687
Hectar predicted targeting categoryother localisation
Exons35
Evalue1.83e-127
EggNOG OGsCOG0508@1|root,KOG0660@1|root,KOG0557@2759|Eukaryota,KOG0660@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_010535.1
EC2.3.1.12,2.7.11.24
DescriptionMAP kinase activity
Cds size1440
COG categoryH
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1004.4.1prot_C-australica_Contig_1004.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1004 4944..8638 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586738.4919815-UTR-C-australica_Contig_1004:4755..47991682586738.4919815-UTR-C-australica_Contig_1004:4755..4799Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 4756..4799 +
1682586738.5061004-UTR-C-australica_Contig_1004:4891..49431682586738.5061004-UTR-C-australica_Contig_1004:4891..4943Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 4892..4943 +
1682586738.7142656-UTR-C-australica_Contig_1004:8638..91131682586738.7142656-UTR-C-australica_Contig_1004:8638..9113Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 8639..9113 +
1682586738.7244282-UTR-C-australica_Contig_1004:9223..95631682586738.7244282-UTR-C-australica_Contig_1004:9223..9563Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 9224..9563 +
1682586738.7322383-UTR-C-australica_Contig_1004:9671..97561682586738.7322383-UTR-C-australica_Contig_1004:9671..9756Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 9672..9756 +
1682586738.740778-UTR-C-australica_Contig_1004:9905..99851682586738.740778-UTR-C-australica_Contig_1004:9905..9985Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 9906..9985 +
1682586738.7516315-UTR-C-australica_Contig_1004:10090..101921682586738.7516315-UTR-C-australica_Contig_1004:10090..10192Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 10091..10192 +
1682586738.7602115-UTR-C-australica_Contig_1004:10284..103901682586738.7602115-UTR-C-australica_Contig_1004:10284..10390Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 10285..10390 +
1682586738.7692788-UTR-C-australica_Contig_1004:10486..105601682586738.7692788-UTR-C-australica_Contig_1004:10486..10560Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 10487..10560 +
1682586738.778554-UTR-C-australica_Contig_1004:10662..107721682586738.778554-UTR-C-australica_Contig_1004:10662..10772Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 10663..10772 +
1682586738.7876587-UTR-C-australica_Contig_1004:10896..109881682586738.7876587-UTR-C-australica_Contig_1004:10896..10988Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 10897..10988 +
1682586738.7980645-UTR-C-australica_Contig_1004:11084..111321682586738.7980645-UTR-C-australica_Contig_1004:11084..11132Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 11085..11132 +
1682586738.80699-UTR-C-australica_Contig_1004:11287..113891682586738.80699-UTR-C-australica_Contig_1004:11287..11389Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 11288..11389 +
1682586738.8167-UTR-C-australica_Contig_1004:11493..116891682586738.8167-UTR-C-australica_Contig_1004:11493..11689Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 11494..11689 +
1682586738.825501-UTR-C-australica_Contig_1004:11807..118801682586738.825501-UTR-C-australica_Contig_1004:11807..11880Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 11808..11880 +
1682586738.8363738-UTR-C-australica_Contig_1004:11959..120631682586738.8363738-UTR-C-australica_Contig_1004:11959..12063Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 11960..12063 +
1682586738.8454099-UTR-C-australica_Contig_1004:12138..122301682586738.8454099-UTR-C-australica_Contig_1004:12138..12230Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 12139..12230 +
1682586738.8540785-UTR-C-australica_Contig_1004:12317..123691682586738.8540785-UTR-C-australica_Contig_1004:12317..12369Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 12318..12369 +
1682586738.8630297-UTR-C-australica_Contig_1004:12470..125711682586738.8630297-UTR-C-australica_Contig_1004:12470..12571Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 12471..12571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586738.5141644-CDS-C-australica_Contig_1004:4943..50041682586738.5141644-CDS-C-australica_Contig_1004:4943..5004Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 4944..5004 +
1682586738.5239067-CDS-C-australica_Contig_1004:5135..52161682586738.5239067-CDS-C-australica_Contig_1004:5135..5216Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 5136..5216 +
1682586738.534237-CDS-C-australica_Contig_1004:5334..53701682586738.534237-CDS-C-australica_Contig_1004:5334..5370Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 5335..5370 +
1682586738.5430298-CDS-C-australica_Contig_1004:5451..55341682586738.5430298-CDS-C-australica_Contig_1004:5451..5534Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 5452..5534 +
1682586738.5523958-CDS-C-australica_Contig_1004:5654..57721682586738.5523958-CDS-C-australica_Contig_1004:5654..5772Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 5655..5772 +
1682586738.5617547-CDS-C-australica_Contig_1004:5872..59641682586738.5617547-CDS-C-australica_Contig_1004:5872..5964Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 5873..5964 +
1682586738.5709667-CDS-C-australica_Contig_1004:6110..62091682586738.5709667-CDS-C-australica_Contig_1004:6110..6209Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 6111..6209 +
1682586738.5811703-CDS-C-australica_Contig_1004:6335..64981682586738.5811703-CDS-C-australica_Contig_1004:6335..6498Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 6336..6498 +
1682586738.591599-CDS-C-australica_Contig_1004:6584..66221682586738.591599-CDS-C-australica_Contig_1004:6584..6622Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 6585..6622 +
1682586738.6011944-CDS-C-australica_Contig_1004:6737..68061682586738.6011944-CDS-C-australica_Contig_1004:6737..6806Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 6738..6806 +
1682586738.611402-CDS-C-australica_Contig_1004:7028..70821682586738.611402-CDS-C-australica_Contig_1004:7028..7082Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 7029..7082 +
1682586738.628939-CDS-C-australica_Contig_1004:7226..73111682586738.628939-CDS-C-australica_Contig_1004:7226..7311Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 7227..7311 +
1682586738.641638-CDS-C-australica_Contig_1004:7406..74891682586738.641638-CDS-C-australica_Contig_1004:7406..7489Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 7407..7489 +
1682586738.6591332-CDS-C-australica_Contig_1004:7686..77551682586738.6591332-CDS-C-australica_Contig_1004:7686..7755Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 7687..7755 +
1682586738.6705415-CDS-C-australica_Contig_1004:7904..79531682586738.6705415-CDS-C-australica_Contig_1004:7904..7953Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 7905..7953 +
1682586738.6815908-CDS-C-australica_Contig_1004:8072..81701682586738.6815908-CDS-C-australica_Contig_1004:8072..8170Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 8073..8170 +
1682586738.6907163-CDS-C-australica_Contig_1004:8279..83571682586738.6907163-CDS-C-australica_Contig_1004:8279..8357Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 8280..8357 +
1682586738.7026227-CDS-C-australica_Contig_1004:8554..86381682586738.7026227-CDS-C-australica_Contig_1004:8554..8638Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 8555..8638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1004.4.1

>prot_C-australica_Contig_1004.4.1 ID=prot_C-australica_Contig_1004.4.1|Name=mRNA_C-australica_Contig_1004.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=480bp
MPALSPTMEAGTITDWKMAPGDEVAPGDVLCEVETDKATVAYEMQDDGVL
AKILAPAGGGELKVGSPMAITVDDMEDYQLFLAADEQGKIMVPGEVSSGA
EPVEASAAAPAAAGTQAAAAVVEGRTVPLEYLFSPAARHMAQSKGVDASS
IAGTGKGGRITKSDLVHALNSGKTFPTLGSAPAVAAASDHATNPAVAIAG
AGAPAPAPAPASAAVPSATASPPAAAPQPRSHLMNFDFGPVSSKGSFIDI
PASQITKVIARRLTESKATVPHYYVSVECEIDSLLGLRKKLATEADTKVS
VNDLVIKSAALALRDVPEVNASWSPKGRKINDSIDVSVAVATPAGLITPI
VTDVDKKGLAEINSNVVDLAARAKDNKLKPEEFQGGTFTISNLGMFGINE
FSAVINPPQSSIMAVGGGVRRVLPGKGVDADGCRNPPRVATVMTTRLSCD
RRVVDEAVAGQFLQAFQFYVQSPSQTMHL*
back to top

mRNA from alignment at C-australica_Contig_1004:4756..12571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1004.4.1 ID=mRNA_C-australica_Contig_1004.4.1|Name=mRNA_C-australica_Contig_1004.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=7816bp|location=Sequence derived from alignment at C-australica_Contig_1004:4756..12571+ (Chrysoparadoxa australica CS_1217)
AGCTTATACACGAGGCGACAAACACCCGGTGGGAGATCAGTCAGGTAGGC CCAGAGGCTCCCTGCAAGCCTTCTCTGTCCTTTTCTTTCTCAGTCAGCCC CAGCTAGTAGCCAGCGACTGACCTCCTAAACTGCAGTGACTTGGCACACA GAGGGCTGAGTGGGGTGCCCAACTATGTGGTTGTGCCAATGCCTGCCCTG TCACCCACCATGGAGGCAGGGACCATCACTGACTGGAAGATGGCGCCAGG TAATGACCTGGCTAAACGCCCAGCAGCCGGACCCACTCTACAAGACAACC CCACGGCAGGCTCATCGTGACGAGCAGCTCCACCTCAGTCCCTCCATCTC TTCCTTCCCACGCTTTACCGTACCCTCTAGGTGATGAGGTAGCTCCTGGT GATGTTTTGTGTGAGGTGGAGACGGACAAGGCAACAGTTGCCTACGAGAT GCAGGACGATGGTTGGTTGGCCTCTTCCTACCTTACTTTTCCCCACCACC ATGCCCCTTCATCACAGCCCATGGCTAAGCTTGCCTGTCACATGCCCTAA CATGAACCACGCTAACTTCTGCTCTCAAGGTGTTCTGGCAAAGATCCTTG CTCCTGCCGGTGGAGGTAACCATGCTCTGTTTCTGTTTGCTCCATTTTAA CTGATGCTGAACCATCCCATCTCACCTGGCTACCCTACTCTCCCAGGTGA GCTCAAGGTTGGGTCACCCATGGCTATCACAGTAGATGACATGGAGGACT ATCAACTATTCCTGGCAGCAGATGAGCAGGTACGGCTGCTCGCCTCGCCC CAATTAGCCTCTGCTTCAGTGCTTTAGTGCTAGGCTTGGTGACTCCTACA CCTGCCGTTACCACTCATTTCTCCCTCACGATGCTGCTGAACCTTTTAGG GCAAGATCATGGTACCTGGTGAGGTCAGCAGCGGTGCTGAGCCTGTAGAG GCAAGTGCAGCAGCTCCTGCAGCAGCAGGCACGCAAGCAGCTGCTGCCGT AGTAGAAGGCAGGACCGGTTAGTGTCCACACACACGGCATGCTCACCCGC ATCCCTTACTCCAACGCGCCAGTTATTCTTTTCTGTCTTCTCCTCCTTCG CTTTGGGTCTTGGGCAGTCCCATTGGAGTATCTCTTTTCTCCGGCAGCGC GGCACATGGCGCAGAGCAAGGGTGTTGATGCCTCCAGCATTGCGGGCACT GGCAAGGGGGTAATGCAGCACCACGTTCACCACCATGTTGCTGATCGCAG ATTGCCTACCATTCCTTGTCGACTCATAGCCTGCCCTTGACTTATGCTGA CTTGCGCTTAGTTACACTTTCGCCTTTCTAATGCCTGCCTAACTGTTGCC ACAAGGGCCGCATCACCAAGTCTGATTTGGTCCACGCTCTGAACTCTGGC AAGACATTCCCGACTCTTGGCAGCGCCCCTGCTGTTGCTGCAGCATCCGA TCATGTATCTTCCTTGCCTGCATGCCCAACCAATACACGCTCAGCTCACG CACATCTCAGCTACTACTGCAGGCGGCCAGAGATGTTGTTGTGCGCCTCA TTGCTGCTCACCCCTTGCCTTCCTCTACAGGCAACCAACCCCGCTGTTGC TATTGCCGGTGCTGGTGCTCCTGCTCCTGCTCCTGCTCCTGCTTCTGCTG CTGTTCCATCAGCTACTGCTTCTCCACCTGCCGCTGCACCGCAGCCACGA AGCCATCTGATGAACTTTGACTTTGGACCAGTTAGCTCAAAGGGTATGGC CGCTCACATCGTTTTAACTCCTGCCACTGTGATACGATCATTCCCTTTCA TTGCTGACTGCGTGACCATGCATTCGCAGGAAGCTTCATTGATATTCCAG CATCCCAGATCACCAAGGTGCGTATCTCACCTGTTAAACTTCTTTTATTA TGCCTGTCCGGAGCTTGCCACAGCTTCATTCTATGCTAGCAGGGACTGCA TGAGCCTGACGAGTTTGATTGGCTTGACACAGGTCATTGCCAGGCGTCTG ACGGAATCTAAGGCAACGGTCCCTCATTATTACGTATCCGTGGAATGTGA GGTATGCCTCGTGCTATGCGCTTTATTTCGCAAGAGAGAAAGTGGAGAGG ATCAAACCGCGAGATGAAACCTTGGGCCGATAGTAGGAGAGCAGTGAGTG CTTGTTTGAGGTGCTAGGAGATGCTTTATTGGGGTGCCGTTCCTTCTGAC ACTGTCTACGTCATTAGTCAAGATGCATTACCCCTGTGCCTGTTGTGCTC ACCTTGTTGCCACTCTCCTTCAGATTGATAGCTTGTTAGGCCTGAGGAAG AAATTGGCCACTGAAGCTGACACCAAGGTTTGTGAGAGTATGTCAGAGCT ACATGGAGTCACGGTGGCTGTCCTATATCTGCACCGCAGCTGCAGCCCTC CTAGCGTGGCTTAACTGGTTTGTCCGAGTCTTACCCGAGCCCTTCCATCT GCTCTCCCGCACCTCGTTCAGGTGTCAGTAAATGACCTAGTCATCAAGTC TGCTGCCCTAGCCCTGAGAGATGTGCCGGAAGTGAATGCATCCTGGAGCC CCAAGGGTCAGTAGCCAAGCCTAGCTCTGTCCTGGCCTGCCTTGAACTCA CTGCTGTGCCACCTCAGCATCACTTCGCTTATCATTGCCTCTTCAATGCA GGCAGAAAGATAAACGATAGCATCGATGTCTCAGTTGCCGTGGCAACGCC AGCTGGGCTCATCACTCCCATTGTCACTGATGTGGTTAGTCGAGCGTCAT TCAGTCATCCTCGCCGCTGTTTGCTTGCACCCATCTGCTCATGCATTTGG ACCTCTAAGCAACCCTCACCCCAGACTTGACCACTTCATATGAGTCCCCT CTCTCCCTACTTAGCTCAAGTTGCTCAAGTTTTCCTGTGCCTGGATATGC TCCCCCTCATCCTTTTCATCCTCCGGCTCAGGACAAGAAGGGCTTAGCGG AGATCAACAGCAACGTTGTTGACCTGGCCGCTAGAGCGAAGGACAACAAG GTCAGCAGCAAGTGACTCTTAACTCATACTGCTCATGGGCGCCTTAGCCT TAGTCTCTGCCGACTCAGATGCAACCACTGGCAGCATGCTCTTGATGCTC TTGTCTTTGTTCATGTCATGTCTTTCTCTCCTTCCCCTTGGCACACCAGC TCAAGCCTGAGGAGTTTCAGGGGGGCACCTTCACCATATCTAACTTGGGT GAGCTCTGCTGCAATCACGCCTCACCTCTGCTGACGCTGGCCTGGTCCCT GGGTCTGGTCCCTTGGCATGGTCCATGGGCAGCCTAGCCTGAGCCAATGC CTCGCGCCGTCTTGCAGGGATGTTTGGCATCAATGAGTTCTCTGCGGTGA TCAACCCACCACAGAGCAGCATTATGGCGGTAGGTGGGGGAGTGAGGAGA GTACTTCCAGGCAAGGTGAGTCGTTTTTGTCGCTTGACCATGCAAACACC CCACCACAGCTTGCTGCACAGCTCTCAGCACAAACCTGCATAGCAAACTC AAATAAACTCGTTGGCTACTTCAGGGTGTGGATGCGGATGGCTGCAGGAA CCCACCGCGCGTGGCAACAGTGATGACAACACGTTTGAGCTGCGATAGGA GGGTATGTACCACATGCCCGCCTGAGTCCGCTTACTCGCCTTGCCATGGG CTTCATCAAAAGGAACACACAGCTGCCATGCTGTTCATGGCTGTCAGAGC CATTAGCCCCGCTAGTTGTTGCGAAGTAGTGGGGGCATTCAGAGCTCTTT CTCTCTCCGCCTCGCCTCTGACTACTTAAAAATGCTTAACTGCACCCAGG TGGTTGATGAGGCAGTTGCTGGTCAGTTCCTGCAAGCATTCCAGTTCTAT GTGCAGAGCCCCAGCCAGACCATGCACCTGTAGATAGCTAATGAAGTCCT CACTCTGCATGGGGCGCCTCTCTCAAGTCCCGCAAGTGATTGATGGATTA ATTGATTGTTTGATTGGTGAGCTGAGCTGAGCTGAGTGATAAGAACGGTA CAGGGCCGGTGATGCCCTCGCCAAAAGCCCGGGGTAGAGGCCGAGTTGCT GGAAACCTTTTTGCGTGTGGTTTTTTATTTTACCCAACTTAAATGCTGTT TAAGATGCGTCTCTTTGCATATCAACAAAGCCCGCGGTGAAGCACTGACT TCCCATGATTACATCATGTATGAAGCTGGAAGCTGCAGAAGACAGAGTCG GATCAGCGGGAGATGAGAAAGGGGACCACCGACTGCTACTTGTGCCCTCC TTCATTCATCAATCTCATCTCTCAGACTAGTCCTCGCCTCACATCTTCAT CTCACCTCGTACTACTCCTCATGGTCGAACTTCTTCAATTGCTTGCGCAA GTTAGCGAGCATCTTCCTCTGATGCGCAGATGAGCAAGAGCTGGCGTCAG CGTCAGCACCATGGCCAAGTTATTGTTAGCACAATTAGCAATTGAGACTC ACAGCTCACCGATGTCAGCATGCTTACCTGTGGCGAGTTGACTGGCTCGG CAAACGCCTTGTTGTGATAGTGCAGCTTGTCGTAGTACGAGTGCTGCCGC AGCAGGTCTGTGCGAGTGATGAGCCCCACCAGCTTGCCCTCCTCCAGCAC AGGCAGCTGGCCGGCATCTTTCAACACGAGCAGCTGTTCCACCCCTTGCA GCGGCTCGTTGATGTCAATGGTGGCAGCACTTCTGCGCATCCAGCCTTTC ACCGGCCTGTCGAGGTGCTTCATGACCTCTGCCTTCTTTACCTCCCGATA ACCTATCAGTCCGGCCACACTACCGTCCTCCTTCACGACTGGTATCCCCC GTATTTCATACCTGGCCAAGTGAGGAGCTTGGACGTTCAGCTGCTGTGGG AATGAAATGACTGAGCCTGCCTAGCCTGATGAATGAGTCAGGGGTGTGTA GCGAGGAAGCGTGCAGTACCGTTCGATGAGTTGCTTGACTTCCTCCATGG AATCGTCAGGGCTGCAGGTCAAGACTGGTGCTGTCATGATATCGCCTAGG TGCAGTTGTGGCAGGGAGGTAGAGTAAGGAGAGGTCCGTGCTGCAATCAA TATGGCTAACCGTGATGGCCCTTAAGTCATACAAGCATGCATGCAAAGCT GACTATTGCGCATCCACTTCTTCTCTCTTCTCTGTCTCAGTTACCTGCAG TCTCTGATTCCACTATTTGATCTTCACACAGCTTGTCCACAAGCCTTGTG AGGTGTTGGCTCCCTTCCAACTGACCACCGCCTGATGATGGTTGATTGAT TGATTGATTGAGCTAATAAGTTAAGTAGTGTGTGAGTGAGTGAGTGAATT GAATCGCTGTTCTCCAGCTGCATGCATGGCACCCACCAGGGATGTTCTCA TCATCCAGCCTAAAGCTGACAGCTGCTGCCTTTGGGTGGCCCCCCCCTCC CAGCTCCCCAAGTACTGCATTGAGGTCGACACCCATCACCTGGAGAGGGT ATTAGAAGGGTGTCAAGGAGACAGGGATGGAATGGATGTGGGCCTGCCCG AGAGAAAACCTAGGCTTTGTCCTTGACTTACCCTGGCCTTGGCCCTGCCA ATGATGGACATGTGATTAGCAGCCTTGCCCTTCTTGCCAGGGTATGTGGA GCCGAGTAACATTACATCACTGTCCGTCACTTCCAGCAGGTTCTGTCGAG TCAAGTTGAGGGTAAGAGGTCCACAGACACAAGCAGGTAGCACCACTGCT GCGCAGTGTCTTGCGGCTCGGGGGGATAAAGAGCACATACCTGGCAGCTA GCGGCCATCCCATTGATGTACGAGTCACTTTCCACCAGAGAAGTCGTAAG CGTTACACCTGAGGCCACCACCAGTGCCACGGGAAGCAGAAGAGGGAGGA GACAAAGGGCTTATCATGAGAGACTTGTGTGTGACACTGTGTCATGTCAA CTGAACTCACCCTTGTGCGTCTTTTTCTTCAAGTTGGAGAAAGCCCGCGT CATGAGCTCCTGCTGCTCTGGCGACAGCGCTGCGTGTCCAAACTCAGCGA TTGCTTGCTGAGAGGCTCCTGTTGGGGAGGGGTGAGGAGGCTACCTTAGC TACTCTCATACGTCAGACGACTCAGACGCCTGCACAGAAGGGTGGCCACA GCGCCCAGCAAGGGTAGGGTTGGTTGGTGGTTCAATTCTCACCGTTCTCC ATGAGCCAGGCCAGTGCTTTCGCGTCCCGCGCAGTCGCTGATTCGTAAGT TAGCGAGCCTGTGTCGCTGTGGACCTGACAAGGGCAATGGCAATGGCAAT GGCAAAGCGCAGAGCAATCAGTGGTCACAGCAAGCAGCAGCAGCAACAGC AAGTATGTAGTGGTCACTAACCCCCAAAGCCAGAAGTGTGGCTTCTTCAG GCATTAACTTGATGTCCTTGTCCTGGAGCATTTCCTGAAGGAGGATGGCC GGATGGAGCAGAGCAGGCCATCAGCTCACTCGGTCAGGCTTGATGAGGTT GATAATGAAGCAAGTACAGAGTGCAGAGCACAGAGCACAGAGCAGAGAGC AGAGAGCACAGACCACAGGCCACAGAGTACAGTACTCACAGTCACAATGG TGCTGACGCTGCCCACTTCTTCAATGACAAGCAGCGTGTGGTCTACGTCA CTCTCAGCCTCCATGTGGTGATCATAAATGTGCACTGAGGGTAAGGGATG GCGGCGAAGCTGTGAGGCCCCTGAGTAAAGGTGATGGGAAGCACAGGCAG GCTACTTGATTGCACCACGTAACCAAACCTAACCTAACCTTCTTCAGCAG AGTCCAAGAACCTTGCTGCTGGTCCCACCCTGAGCGCAGGGGAGGGTGCG AGTTGTCGAGTCGGTGGCATTGAGGCTGGTGCAGGGAGCTCCCACCTATC TCTCTTCTGAGCATCCACCATGCCCACCCGTTGGATCTCTTCCGGGTCAA TCTCCTTGAAGGACTTGATGGGGTACATGTTCTTGTGCAGGGCTGTTGGC GGTGTGAGTCGGCGGTGAGAGACATCAGCGGTGAAGGCAGAGGTTTTAAG GTGCTGGACCTAAGAAGTGTGCCATAGTAGGGTGAAGGCAGAGGTTTTAG AGGTGCTGGACCTAAGAAGTGTGCCACAGTTGGGTGGCTCCCTCGCGGCA CACAAACGTAGCACGGCGTGTTCGGGTCTTCGCTCTGTGGAGGTGGACGG GGCAGGCACAGTGGGGAAAGGAATTGGGCAAGCAGGTCAAGCGTGGTGGG TCAGTGGCCTCACCTTCCACACCTTCACCAGCCCCACGGCAGCTGCCAAG GTATCAAAGTCAGCTGTTGTGTGCGTGAGAACAACGTTGATCTTGCCCCC ACCCGCCTCCTGCCAGACGCGAAAGGTAGGTGAGATTTGGTCAGGGTCAG AGCTTCCAGCCTCCTGTCGTTTGTCTTTGCCCACCTCGAGGAGGCTTCCC ACCGCGAAGCGGCATGTGCGAGGCCTCAAGCGAGGCCTGGCCACAGCGGC CCTAGTGTGAGGAATGACCTGCAGGGTTTGTACACCGGATTTGCAAGTTA TTAGCTTGCTAGGTAGGGAGTTAGGAAGGTAGGTCGAGAAGCATAGGGCT GTACCTGTGCAGGGGGGACTGCATGCAGCATGCGAAAGCCAAAGCCCATT GCTGGTTGGACGCTGTTGGAAGGGAGCAAGGAGGAAGAAAGGGCTTAGTG GGAAAGAGTCCCACACGATGAGGATCTCATTGGGAATGAACAGCCCCCAG ATCAACTCACCTCAGCCCAAGCAAGGGCACCACAGCCAGCAACATTGAGA AATCAGCTCCTTCAACAATAGCCAATCTGTTGCATTCGCCAGGAGAAGCA CATTCTCTCCTTCTCT
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_1004:4756..12571+

>mRNA_C-australica_Contig_1004.4.1 ID=mRNA_C-australica_Contig_1004.4.1|Name=mRNA_C-australica_Contig_1004.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1440bp|location=Sequence derived from alignment at C-australica_Contig_1004:4756..12571+ (Chrysoparadoxa australica CS_1217)
ATGCCTGCCCTGTCACCCACCATGGAGGCAGGGACCATCACTGACTGGAA
GATGGCGCCAGGTGATGAGGTAGCTCCTGGTGATGTTTTGTGTGAGGTGG
AGACGGACAAGGCAACAGTTGCCTACGAGATGCAGGACGATGGTGTTCTG
GCAAAGATCCTTGCTCCTGCCGGTGGAGGTGAGCTCAAGGTTGGGTCACC
CATGGCTATCACAGTAGATGACATGGAGGACTATCAACTATTCCTGGCAG
CAGATGAGCAGGGCAAGATCATGGTACCTGGTGAGGTCAGCAGCGGTGCT
GAGCCTGTAGAGGCAAGTGCAGCAGCTCCTGCAGCAGCAGGCACGCAAGC
AGCTGCTGCCGTAGTAGAAGGCAGGACCGTCCCATTGGAGTATCTCTTTT
CTCCGGCAGCGCGGCACATGGCGCAGAGCAAGGGTGTTGATGCCTCCAGC
ATTGCGGGCACTGGCAAGGGGGGCCGCATCACCAAGTCTGATTTGGTCCA
CGCTCTGAACTCTGGCAAGACATTCCCGACTCTTGGCAGCGCCCCTGCTG
TTGCTGCAGCATCCGATCATGCAACCAACCCCGCTGTTGCTATTGCCGGT
GCTGGTGCTCCTGCTCCTGCTCCTGCTCCTGCTTCTGCTGCTGTTCCATC
AGCTACTGCTTCTCCACCTGCCGCTGCACCGCAGCCACGAAGCCATCTGA
TGAACTTTGACTTTGGACCAGTTAGCTCAAAGGGAAGCTTCATTGATATT
CCAGCATCCCAGATCACCAAGGTCATTGCCAGGCGTCTGACGGAATCTAA
GGCAACGGTCCCTCATTATTACGTATCCGTGGAATGTGAGATTGATAGCT
TGTTAGGCCTGAGGAAGAAATTGGCCACTGAAGCTGACACCAAGGTGTCA
GTAAATGACCTAGTCATCAAGTCTGCTGCCCTAGCCCTGAGAGATGTGCC
GGAAGTGAATGCATCCTGGAGCCCCAAGGGCAGAAAGATAAACGATAGCA
TCGATGTCTCAGTTGCCGTGGCAACGCCAGCTGGGCTCATCACTCCCATT
GTCACTGATGTGGACAAGAAGGGCTTAGCGGAGATCAACAGCAACGTTGT
TGACCTGGCCGCTAGAGCGAAGGACAACAAGCTCAAGCCTGAGGAGTTTC
AGGGGGGCACCTTCACCATATCTAACTTGGGGATGTTTGGCATCAATGAG
TTCTCTGCGGTGATCAACCCACCACAGAGCAGCATTATGGCGGTAGGTGG
GGGAGTGAGGAGAGTACTTCCAGGCAAGGGTGTGGATGCGGATGGCTGCA
GGAACCCACCGCGCGTGGCAACAGTGATGACAACACGTTTGAGCTGCGAT
AGGAGGGTGGTTGATGAGGCAGTTGCTGGTCAGTTCCTGCAAGCATTCCA
GTTCTATGTGCAGAGCCCCAGCCAGACCATGCACCTGTAG
back to top