Homology
BLAST of mRNA_C-australica_Contig_1004.2.1 vs. uniprot
Match:
D8LEM3_ECTSI (ADF-H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEM3_ECTSI)
HSP 1 Score: 63.5 bits (153), Expect = 9.560e-9
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 2
Query: 164 SRGVVKVLASGEGGMSELSPHLDPGLVVWGALRCLAPDGGSGVKFVRLAWVGEEVGGMAKGKAGMHKNSIFGAMDGAVG-EVSATSAEEL 430
S V+K+L SG GG+SEL L +V + +R + D GS +F R+ +VGEEVGGM KG+A + KN++F +GA G + +S E+L
Sbjct: 51 SNSVIKLLGSGIGGVSELCSTLLDSMVAFCGVR-VGDDKGS-ARFHRILFVGEEVGGMKKGRAALAKNAVFAVFEGASGGDHDFSSVEDL 138
BLAST of mRNA_C-australica_Contig_1004.2.1 vs. uniprot
Match:
A0A7S4HCW9_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HCW9_9EUKA)
HSP 1 Score: 53.9 bits (128), Expect = 3.140e-5
Identity = 29/89 (32.58%), Postives = 41/89 (46.07%), Query Frame = 2
Query: 161 DSRGVVKVLASGEGGMSELSPHLDPGLVVWGALRCLAPDGGSGVKFVRLAWVGEEVGGMAKGKAGMHKNSIFGAMDGAVGEVSATSAEE 427
+ + +K LASG G L HL VV+GA R + KF + +GE GGM KG+A H + ++G G + EE
Sbjct: 52 EGKAKLKRLASGTDGYRGLRAHLAEDAVVYGAFRVTTAGESTASKFTFVTSIGENAGGMVKGRATAHAQCVEAGLEGTAGGIQLAGEEE 140
BLAST of mRNA_C-australica_Contig_1004.2.1 vs. uniprot
Match:
A0A0L0D7T4_THETB (Cofilin/tropomyosin-type actin-binding protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D7T4_THETB)
HSP 1 Score: 54.3 bits (129), Expect = 9.880e-5
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 2
Query: 161 DSRGVVKVLASGEGGMSELSPHLDPGLVVWGALRCLAPDGGSG-VKFVRLAWVGEEVGGMAKGKAGMHKNSI 373
+S+ ++V A+GEGG EL L + + LR D S +KFV + WVG+ VGGMA+G+ +HK S+
Sbjct: 31 ESKKKLQVDATGEGGYDELMAFLTDDKITYALLRLTDGDQESQRIKFVAITWVGQNVGGMARGRVTVHKPSV 102
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1004.2.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 9.56e-9 / Id = 43.33 Expect = 3.14e-5 / Id = 32.58 Expect = 9.88e-5 / Id = 40.28 Sequence D8LEM3_ECTSI A0A7S4HCW9_9EUKA A0A0L0D7T4_THETB back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Seed ortholog 2903.EOD33751 PFAMs Cofilin_ADF Model size 959 Max annot lvl 2759|Eukaryota KEGG ko ko:K20520 Hectar predicted targeting category other localisation Exons 4 Evalue 5.28e-06 EggNOG OGs KOG3655@1|root,KOG3655@2759|Eukaryota Ec32 ortholog description ADF-H/Gelsolin-like domain Ec32 ortholog Ec-23_002470.1 Description actin binding Cds size 282 COG category Z BRITE ko00000,ko04131
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682586738.4135442-UTR-C-australica_Contig_1004:3079..3510 1682586738.4135442-UTR-C-australica_Contig_1004:3079..3510 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_1004 3080..3510 - 1682586738.423196-UTR-C-australica_Contig_1004:3587..3628 1682586738.423196-UTR-C-australica_Contig_1004:3587..3628 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_1004 3588..3628 - 1682586738.461102-UTR-C-australica_Contig_1004:4062..4267 1682586738.461102-UTR-C-australica_Contig_1004:4062..4267 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_1004 4063..4267 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682586738.4313693-CDS-C-australica_Contig_1004:3628..3712 1682586738.4313693-CDS-C-australica_Contig_1004:3628..3712 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_1004 3629..3712 - 1682586738.4408529-CDS-C-australica_Contig_1004:3793..3915 1682586738.4408529-CDS-C-australica_Contig_1004:3793..3915 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_1004 3794..3915 - 1682586738.4507682-CDS-C-australica_Contig_1004:3986..4062 1682586738.4507682-CDS-C-australica_Contig_1004:3986..4062 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_1004 3987..4062 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1004.2.1
>prot_C-australica_Contig_1004.2.1 ID=prot_C-australica_Contig_1004.2.1|Name=mRNA_C-australica_Contig_1004.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=94bp
MSELSPHLDPGLVVWGALRCLAPDGGSGVKFVRLAWVGEEVGGMAKGKAG back to top mRNA from alignment at C-australica_Contig_1004:3080..4267-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1004.2.1 ID=mRNA_C-australica_Contig_1004.2.1|Name=mRNA_C-australica_Contig_1004.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1188bp|location=Sequence derived from alignment at C-australica_Contig_1004:3080..4267- (Chrysoparadoxa australica CS_1217)AGCGATCAGCTGGCTTAACCTTAGATGAAAGCGTCACAGCAGCTTATGAA
GATGTTAGAGCAGACACAAGCCCAACAGCATGGATGCTTTGCACCTATGC
CAAGGTGAGCTGTGAGCTATTAATGCCTCTGATCTGGACCTAAGCCTTGC
CTCATAATAGGATTCGCGCGGAGTAGTGAAGGTGCTTGCATCTGGGGAGG
GTGGA ATGTCAGAGTTGAGCCCACACCTTGACCCTGGGTTAGTCGTATGG
GGTGCGCTGCGGTGCTTGGCACCTGATGGAG GTATGACTTATGATACTTC
GGAGGCTTAAACACCAAGACTGATCCTTTGCCCTTTGGCATCTCTAATTC
AGGCAGTGGTGTAAAGTTTGTGAGGCTGGCTTGGGTGGGTGAGGAGGTGG
GCGGCATGGCCAAGGGCAAGGCGGGCATGCATAAGAATAGCATCTTCGGA
GCTATGGATGGGGCTGTGGGAGAG GTAGATTGATGCTGTTTATACCCTTA
CGACACAGATAAGCTCACCATTACGATATGTGCTGCTCATGCTCTTGCTC
ATCAGGTATCAGCAACATCAGCTGAGGAGCTTCCAGGGTTGTTGGAGGAG
GTGGGAAAGGTGACAGGAGGCTGGGTGTTCCCAGTGTAG TTCAACCTGGT
GCATGTAAGAGCTGCTCTAACATGAGGCAG GTGAGCAGTCTATAAGAGGT
GCAAGTGGTGTGCTTGCCCTTGCTCTACCTCACAAACCTCATTCTTGGGC
TGTGCAGGTGACCTCTCCGTTGCTGTTGCCGGTGTGTTGAAGCCAGGCGT
AAGGAGTACTTCTCCCCCTCCTCAAGCGTGGACATTCAACGAGGGAGCTA
TGGAAGGCTGCAGCAAAGGCACCTGGCTTCATCTCAACCTCGCCTTACAG
GGGTTCACTGATGTGGCTTGTGATTGGGCTCTGTTGATAAGCGATGATTG
AGTTGGGAGGGATCCGAGCGGGTGAAGAGCTTTGAGCTTTTCCGCTCCTG
GTCAGAGGTCCTGAGCCCCTGGCTTGTCATATGGGGTGCACGTTTTGCGC
ATGCTCATGCTCTCCACTCACTAGCCCCAGCTCCTTCTCCAAGCCGTAGA
ATGTGGTTGTAAGACTCAAATCAAGCCAGGAGAGCCTCTCCCAGCTGAGC
ATAAAACATAATAATCCGAAGAAGAAGAAGAATCTCCA back to top Coding sequence (CDS) from alignment at C-australica_Contig_1004:3080..4267-
>mRNA_C-australica_Contig_1004.2.1 ID=mRNA_C-australica_Contig_1004.2.1|Name=mRNA_C-australica_Contig_1004.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=282bp|location=Sequence derived from alignment at C-australica_Contig_1004:3080..4267- (Chrysoparadoxa australica CS_1217) back to top