mRNA_C-australica_Contig_1004.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1004.2.1 vs. uniprot
Match: D8LEM3_ECTSI (ADF-H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEM3_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 9.560e-9 Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 2 Query: 164 SRGVVKVLASGEGGMSELSPHLDPGLVVWGALRCLAPDGGSGVKFVRLAWVGEEVGGMAKGKAGMHKNSIFGAMDGAVG-EVSATSAEEL 430
S V+K+L SG GG+SEL L +V + +R + D GS +F R+ +VGEEVGGM KG+A + KN++F +GA G + +S E+L
Sbjct: 51 SNSVIKLLGSGIGGVSELCSTLLDSMVAFCGVR-VGDDKGS-ARFHRILFVGEEVGGMKKGRAALAKNAVFAVFEGASGGDHDFSSVEDL 138
BLAST of mRNA_C-australica_Contig_1004.2.1 vs. uniprot
Match: A0A7S4HCW9_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HCW9_9EUKA) HSP 1 Score: 53.9 bits (128), Expect = 3.140e-5 Identity = 29/89 (32.58%), Postives = 41/89 (46.07%), Query Frame = 2 Query: 161 DSRGVVKVLASGEGGMSELSPHLDPGLVVWGALRCLAPDGGSGVKFVRLAWVGEEVGGMAKGKAGMHKNSIFGAMDGAVGEVSATSAEE 427
+ + +K LASG G L HL VV+GA R + KF + +GE GGM KG+A H + ++G G + EE
Sbjct: 52 EGKAKLKRLASGTDGYRGLRAHLAEDAVVYGAFRVTTAGESTASKFTFVTSIGENAGGMVKGRATAHAQCVEAGLEGTAGGIQLAGEEE 140
BLAST of mRNA_C-australica_Contig_1004.2.1 vs. uniprot
Match: A0A0L0D7T4_THETB (Cofilin/tropomyosin-type actin-binding protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D7T4_THETB) HSP 1 Score: 54.3 bits (129), Expect = 9.880e-5 Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 2 Query: 161 DSRGVVKVLASGEGGMSELSPHLDPGLVVWGALRCLAPDGGSG-VKFVRLAWVGEEVGGMAKGKAGMHKNSI 373
+S+ ++V A+GEGG EL L + + LR D S +KFV + WVG+ VGGMA+G+ +HK S+
Sbjct: 31 ESKKKLQVDATGEGGYDELMAFLTDDKITYALLRLTDGDQESQRIKFVAITWVGQNVGGMARGRVTVHKPSV 102 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1004.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1004.2.1 >prot_C-australica_Contig_1004.2.1 ID=prot_C-australica_Contig_1004.2.1|Name=mRNA_C-australica_Contig_1004.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=94bp MSELSPHLDPGLVVWGALRCLAPDGGSGVKFVRLAWVGEEVGGMAKGKAGback to top mRNA from alignment at C-australica_Contig_1004:3080..4267- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1004.2.1 ID=mRNA_C-australica_Contig_1004.2.1|Name=mRNA_C-australica_Contig_1004.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1188bp|location=Sequence derived from alignment at C-australica_Contig_1004:3080..4267- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1004:3080..4267- >mRNA_C-australica_Contig_1004.2.1 ID=mRNA_C-australica_Contig_1004.2.1|Name=mRNA_C-australica_Contig_1004.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=282bp|location=Sequence derived from alignment at C-australica_Contig_1004:3080..4267- (Chrysoparadoxa australica CS_1217)back to top |