mRNA_C-australica_Contig_1001.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1001.4.1
Unique NamemRNA_C-australica_Contig_1001.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: A0A835ZCW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCW1_9STRA)

HSP 1 Score: 132 bits (332), Expect = 4.120e-34
Identity = 58/101 (57.43%), Postives = 78/101 (77.23%), Query Frame = 1
Query:  109 MGGGASLLPLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYDIVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411
            MGGG SLLP PD+R   CI+AL L   +L+ AF +F   D  KKG +PL TFY ++ ERKS+FGDSI ++LG+R+T E++FGEWLQA+VTYCLF+E ++L+
Sbjct:    1 MGGGISLLPEPDDRIANCIKALCLNNTELAQAFDIFQAHDTAKKGTIPLATFYKMIGERKSMFGDSIFDLLGVRDTREIDFGEWLQAIVTYCLFDESDVLK 101          
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: D7G2J3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J3_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.100e-25
Identity = 49/98 (50.00%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  118 GASLLPLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYDIVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411
            G++LLP PD+R LK I+ L L   DL+  F+LF  +D  ++G + L   Y ++ E+KS+FGDS+ E++GIR+  EL F EWL A+ T+CLFEE+EILR
Sbjct:    5 GSTLLPAPDDRLLKSIKILDLSNTDLAKVFRLFCKYDTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEEILR 102          
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: A0A6H5L1H5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H5_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.570e-25
Identity = 49/98 (50.00%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  118 GASLLPLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYDIVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411
            G++LLP PD+R LK I+ L L   DL+  F+LF  +D  ++G + L   Y ++ E+KS+FGDS+ E++GIR+  EL F EWL A+ T+CLFEE+EILR
Sbjct:    5 GSTLLPAPDDRLLKSIKILDLSNTDLAKVFRLFCKYDTAQRGCLSLANVYKMIGEKKSIFGDSLYELIGIRDFQELTFSEWLDAITTFCLFEEEEILR 102          
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: A0A6S8V9R4_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8V9R4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.640e-17
Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  118 GASL-LPLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYDIVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411
            GAS+ +P PD R LK ++ + +  K+L+  ++ F   DK   G + +  FY + +E++S+FGD I ++  I  T EL+FGE+L A++TYCLFE QEILR
Sbjct:    2 GASMTVPNPDHRTLKVMEFINIGVKELAVFWRHFREGDKEMLGVIAIDQFYLLFHEKRSIFGDGIFDLCDIHHTEELDFGEYLVAVITYCLFEPQEILR 100          
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: A0A7S2C3E2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3E2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.400e-16
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  115 GGASLLPLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYDIVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411
            G A+ +P PD R LK ++   +  K+L   +  F   DK   G V +  FY    E++S+FGD+I E++   ++  L+FGE++ A+VTYCLFE+ E+LR
Sbjct:    2 GAANSVPTPDSRTLKAMELGHINMKELGIFWSAFRSIDKKLTGSVDISDFYKFFEEKRSIFGDAIFELIDCNQSGSLDFGEFVHAVVTYCLFEQDEMLR 100          
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: A0A2R5GWK3_9STRA (Calmodulin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWK3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.280e-13
Identity = 32/94 (34.04%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  130 LPLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYDIVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411
            +P+PD+R  K I  L L KK+++  +++F  +D+   G + ++ FY ++ E +++FGDS+ E++ I  +  L+F E++Q + TY LF   +IL+
Sbjct:    5 IPVPDDRLQKTIDMLKLSKKEINKFWRIFQKYDRDHGGTIDVEEFYRLIEEERTVFGDSLFELVDIDCSGTLDFSEFVQTIATYALFARVDILK 98          
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: A0A7S2D7S8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D7S8_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.180e-11
Identity = 33/94 (35.11%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  133 PLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYD-IVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411
            P+ D+R  +  + + L   D+   + +F   D  + G V  + F+  IV E +++FG++I E++   +  +LEFGE+LQ +VTYC F+E EIL+
Sbjct:    6 PVADDRVQRAAEMVKLNVSDIKGFWNVFRKCDYDRIGIVATEDFFTKIVQEGRNMFGNAIFELIDAEDPDKLEFGEFLQGVVTYCCFDELEILQ 99          
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: A0A6H5J7N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N0_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.600e-7
Identity = 26/94 (27.66%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  133 PLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYD-IVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411
            P   ER  +C +   L  +++ + +++F  +D  ++G +  Q F++ I+ E ++ FG++I  ++   +   LEFGE++QA+ T+C F   ++L+
Sbjct:   10 PPSGERVARCKELFMLTNENIEALWEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLK 103          
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: D8LMG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG3_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 3.300e-5
Identity = 22/79 (27.85%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  178 LKKKDLSSAFQLFSLWDKGKKGFVPLQTFYD-IVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411
            L  +++ + +++F  +D  ++G +  Q F++ I+ E ++ FG++I  ++   +   LEFGE++QA+ T+C F   ++L+
Sbjct:    2 LTNENIEALWEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLK 80          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835ZCW1_9STRA4.120e-3457.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G2J3_ECTSI1.100e-2550.00EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L1H5_9PHAE1.570e-2550.00EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6S8V9R4_9STRA1.640e-1743.43Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S2C3E2_9STRA4.400e-1639.39Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2R5GWK3_9STRA2.280e-1334.04Calmodulin-like protein n=1 Tax=Hondaea fermentalg... [more]
A0A7S2D7S8_9STRA7.180e-1135.11Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6H5J7N0_9PHAE3.600e-727.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMG3_ECTSI3.300e-527.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1001contigC-australica_Contig_1001:8393..9098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2J3
Model size414
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.38e-27
EggNOG OGs2DCZ5@1|root,2SCZN@2759|Eukaryota
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586736.2525096-CDS-C-australica_Contig_1001:8392..85081682586736.2525096-CDS-C-australica_Contig_1001:8392..8508Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1001 8393..8508 -
1682586736.2707026-CDS-C-australica_Contig_1001:8738..88611682586736.2707026-CDS-C-australica_Contig_1001:8738..8861Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1001 8739..8861 -
1682586736.2791326-CDS-C-australica_Contig_1001:8923..89901682586736.2791326-CDS-C-australica_Contig_1001:8923..8990Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1001 8924..8990 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586736.2872632-UTR-C-australica_Contig_1001:8990..90981682586736.2872632-UTR-C-australica_Contig_1001:8990..9098Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1001 8991..9098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1001.4.1prot_C-australica_Contig_1001.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1001 8393..8990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1001.4.1

>prot_C-australica_Contig_1001.4.1 ID=prot_C-australica_Contig_1001.4.1|Name=mRNA_C-australica_Contig_1001.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=102bp
MGGGASLLPLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQ
TFYDIVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEIL
R*
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mRNA from alignment at C-australica_Contig_1001:8393..9098-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1001.4.1 ID=mRNA_C-australica_Contig_1001.4.1|Name=mRNA_C-australica_Contig_1001.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=706bp|location=Sequence derived from alignment at C-australica_Contig_1001:8393..9098- (Chrysoparadoxa australica CS_1217)
CGGGGTCAAAAACTTTACATAACGAGGCCATGAAAGACAACAAGAGCTGG GGGACCGGGCCGTGATGAGAATCTCCCCGCAGGCGAGGAGTCAGCTGCTA GAACAGCAATGGGCGGGGGGGCGTCCTTGCTGCCACTTCCCGATGAGAGA TGCCTAAAGTGCATCCAGGCCTTAGGTTTGTACCCATGGCCTAAGGAATG TCTGGCTAAGGACGATCTGCCTAACGCACGACTGCAGGGCTGAAGAAGAA GGATTTATCCAGTGCTTTTCAGCTGTTCTCATTGTGGGACAAAGGAAAGA AGGGCTTCGTCCCGCTGCAGACATTCTACGACATTGTGAATGAGAGAAAA TCCCTTTTTGGTGAGTGGTTTAACGTGCTTCAGCTGTGATCGGAAGGCGC CACATCTAAGGTTGAATGTGACAAGTAATGCCTGAGAGCCCATTCAGGTC ATGCCAAATAGCAGAGCACTCCCTCAAACATATCCGCAGCATTACAAAAG CATAATTCCCTCCTCACTGTTCCTTCTCCCTTTTGCTCTTCGCACGTCTT ATCATATTCACGGAGCCCTCCTTGCCCTCTTTACGCGCAGGAGACAGCAT ACTTGAGATTCTTGGCATCAGAGAAACCCACGAACTTGAATTTGGGGAAT GGCTTCAAGCCATGGTCACATATTGCCTGTTTGAGGAACAGGAGATACTG CGGTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_1001:8393..9098-

>mRNA_C-australica_Contig_1001.4.1 ID=mRNA_C-australica_Contig_1001.4.1|Name=mRNA_C-australica_Contig_1001.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=306bp|location=Sequence derived from alignment at C-australica_Contig_1001:8393..9098- (Chrysoparadoxa australica CS_1217)
ATGGGCGGGGGGGCGTCCTTGCTGCCACTTCCCGATGAGAGATGCCTAAA
GTGCATCCAGGCCTTAGGGCTGAAGAAGAAGGATTTATCCAGTGCTTTTC
AGCTGTTCTCATTGTGGGACAAAGGAAAGAAGGGCTTCGTCCCGCTGCAG
ACATTCTACGACATTGTGAATGAGAGAAAATCCCTTTTTGGAGACAGCAT
ACTTGAGATTCTTGGCATCAGAGAAACCCACGAACTTGAATTTGGGGAAT
GGCTTCAAGCCATGGTCACATATTGCCTGTTTGAGGAACAGGAGATACTG
CGGTAA
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