mRNA_C-australica_Contig_1001.4.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: A0A835ZCW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCW1_9STRA) HSP 1 Score: 132 bits (332), Expect = 4.120e-34 Identity = 58/101 (57.43%), Postives = 78/101 (77.23%), Query Frame = 1 Query: 109 MGGGASLLPLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYDIVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411 MGGG SLLP PD+R CI+AL L +L+ AF +F D KKG +PL TFY ++ ERKS+FGDSI ++LG+R+T E++FGEWLQA+VTYCLF+E ++L+ Sbjct: 1 MGGGISLLPEPDDRIANCIKALCLNNTELAQAFDIFQAHDTAKKGTIPLATFYKMIGERKSMFGDSIFDLLGVRDTREIDFGEWLQAIVTYCLFDESDVLK 101
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: D7G2J3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J3_ECTSI) HSP 1 Score: 108 bits (270), Expect = 1.100e-25 Identity = 49/98 (50.00%), Postives = 70/98 (71.43%), Query Frame = 1 Query: 118 GASLLPLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYDIVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411 G++LLP PD+R LK I+ L L DL+ F+LF +D ++G + L Y ++ E+KS+FGDS+ E++GIR+ EL F EWL A+ T+CLFEE+EILR Sbjct: 5 GSTLLPAPDDRLLKSIKILDLSNTDLAKVFRLFCKYDTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEEILR 102
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: A0A6H5L1H5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H5_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.570e-25 Identity = 49/98 (50.00%), Postives = 70/98 (71.43%), Query Frame = 1 Query: 118 GASLLPLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYDIVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411 G++LLP PD+R LK I+ L L DL+ F+LF +D ++G + L Y ++ E+KS+FGDS+ E++GIR+ EL F EWL A+ T+CLFEE+EILR Sbjct: 5 GSTLLPAPDDRLLKSIKILDLSNTDLAKVFRLFCKYDTAQRGCLSLANVYKMIGEKKSIFGDSLYELIGIRDFQELTFSEWLDAITTFCLFEEEEILR 102
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: A0A6S8V9R4_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8V9R4_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.640e-17 Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = 1 Query: 118 GASL-LPLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYDIVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411 GAS+ +P PD R LK ++ + + K+L+ ++ F DK G + + FY + +E++S+FGD I ++ I T EL+FGE+L A++TYCLFE QEILR Sbjct: 2 GASMTVPNPDHRTLKVMEFINIGVKELAVFWRHFREGDKEMLGVIAIDQFYLLFHEKRSIFGDGIFDLCDIHHTEELDFGEYLVAVITYCLFEPQEILR 100
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: A0A7S2C3E2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3E2_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 4.400e-16 Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 1 Query: 115 GGASLLPLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYDIVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411 G A+ +P PD R LK ++ + K+L + F DK G V + FY E++S+FGD+I E++ ++ L+FGE++ A+VTYCLFE+ E+LR Sbjct: 2 GAANSVPTPDSRTLKAMELGHINMKELGIFWSAFRSIDKKLTGSVDISDFYKFFEEKRSIFGDAIFELIDCNQSGSLDFGEFVHAVVTYCLFEQDEMLR 100
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: A0A2R5GWK3_9STRA (Calmodulin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWK3_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 2.280e-13 Identity = 32/94 (34.04%), Postives = 61/94 (64.89%), Query Frame = 1 Query: 130 LPLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYDIVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411 +P+PD+R K I L L KK+++ +++F +D+ G + ++ FY ++ E +++FGDS+ E++ I + L+F E++Q + TY LF +IL+ Sbjct: 5 IPVPDDRLQKTIDMLKLSKKEINKFWRIFQKYDRDHGGTIDVEEFYRLIEEERTVFGDSLFELVDIDCSGTLDFSEFVQTIATYALFARVDILK 98
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: A0A7S2D7S8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D7S8_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 7.180e-11 Identity = 33/94 (35.11%), Postives = 57/94 (60.64%), Query Frame = 1 Query: 133 PLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYD-IVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411 P+ D+R + + + L D+ + +F D + G V + F+ IV E +++FG++I E++ + +LEFGE+LQ +VTYC F+E EIL+ Sbjct: 6 PVADDRVQRAAEMVKLNVSDIKGFWNVFRKCDYDRIGIVATEDFFTKIVQEGRNMFGNAIFELIDAEDPDKLEFGEFLQGVVTYCCFDELEILQ 99
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: A0A6H5J7N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N0_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 3.600e-7 Identity = 26/94 (27.66%), Postives = 56/94 (59.57%), Query Frame = 1 Query: 133 PLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQTFYD-IVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411 P ER +C + L +++ + +++F +D ++G + Q F++ I+ E ++ FG++I ++ + LEFGE++QA+ T+C F ++L+ Sbjct: 10 PPSGERVARCKELFMLTNENIEALWEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLK 103
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Match: D8LMG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG3_ECTSI) HSP 1 Score: 51.2 bits (121), Expect = 3.300e-5 Identity = 22/79 (27.85%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 178 LKKKDLSSAFQLFSLWDKGKKGFVPLQTFYD-IVNERKSLFGDSILEILGIRETHELEFGEWLQAMVTYCLFEEQEILR 411 L +++ + +++F +D ++G + Q F++ I+ E ++ FG++I ++ + LEFGE++QA+ T+C F ++L+ Sbjct: 2 LTNENIEALWEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLK 80 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1001.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1001.4.1 >prot_C-australica_Contig_1001.4.1 ID=prot_C-australica_Contig_1001.4.1|Name=mRNA_C-australica_Contig_1001.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=102bp MGGGASLLPLPDERCLKCIQALGLKKKDLSSAFQLFSLWDKGKKGFVPLQback to top mRNA from alignment at C-australica_Contig_1001:8393..9098- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1001.4.1 ID=mRNA_C-australica_Contig_1001.4.1|Name=mRNA_C-australica_Contig_1001.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=706bp|location=Sequence derived from alignment at C-australica_Contig_1001:8393..9098- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1001:8393..9098- >mRNA_C-australica_Contig_1001.4.1 ID=mRNA_C-australica_Contig_1001.4.1|Name=mRNA_C-australica_Contig_1001.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=306bp|location=Sequence derived from alignment at C-australica_Contig_1001:8393..9098- (Chrysoparadoxa australica CS_1217)back to top |