mRNA_C-australica_Contig_1001.2.3 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Stop	1
Start	1
Model size	1491
Hectar predicted targeting category	other localisation
Exons	14
Cds size	987

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-australica_Contig_1001.2.3	prot_C-australica_Contig_1001.2.3	Chrysoparadoxa australica CS_1217	polypeptide	C-australica_Contig_1001 3757..5924 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682586735.9175324-UTR-C-australica_Contig_1001:3625..3670	1682586735.9175324-UTR-C-australica_Contig_1001:3625..3670	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_1001 3626..3670 +
1682586735.9260576-UTR-C-australica_Contig_1001:3732..3756	1682586735.9260576-UTR-C-australica_Contig_1001:3732..3756	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_1001 3733..3756 +
1682586736.0309894-UTR-C-australica_Contig_1001:5924..6209	1682586736.0309894-UTR-C-australica_Contig_1001:5924..6209	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_1001 5925..6209 +
1682586736.0408263-UTR-C-australica_Contig_1001:6325..6360	1682586736.0408263-UTR-C-australica_Contig_1001:6325..6360	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_1001 6326..6360 +
1682586736.0517356-UTR-C-australica_Contig_1001:6492..6555	1682586736.0517356-UTR-C-australica_Contig_1001:6492..6555	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_1001 6493..6555 +
1682586736.063242-UTR-C-australica_Contig_1001:6750..6802	1682586736.063242-UTR-C-australica_Contig_1001:6750..6802	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_1001 6751..6802 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682586735.9340858-CDS-C-australica_Contig_1001:3756..3824	1682586735.9340858-CDS-C-australica_Contig_1001:3756..3824	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1001 3757..3824 +
1682586735.9481847-CDS-C-australica_Contig_1001:3972..4046	1682586735.9481847-CDS-C-australica_Contig_1001:3972..4046	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1001 3973..4046 +
1682586735.9588814-CDS-C-australica_Contig_1001:4195..4261	1682586735.9588814-CDS-C-australica_Contig_1001:4195..4261	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1001 4196..4261 +
1682586735.9668424-CDS-C-australica_Contig_1001:4323..4488	1682586735.9668424-CDS-C-australica_Contig_1001:4323..4488	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1001 4324..4488 +
1682586735.9768977-CDS-C-australica_Contig_1001:4603..4707	1682586735.9768977-CDS-C-australica_Contig_1001:4603..4707	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1001 4604..4707 +
1682586735.9893796-CDS-C-australica_Contig_1001:4860..4908	1682586735.9893796-CDS-C-australica_Contig_1001:4860..4908	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1001 4861..4908 +
1682586735.997594-CDS-C-australica_Contig_1001:5095..5185	1682586735.997594-CDS-C-australica_Contig_1001:5095..5185	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1001 5096..5185 +
1682586736.0056226-CDS-C-australica_Contig_1001:5279..5315	1682586736.0056226-CDS-C-australica_Contig_1001:5279..5315	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1001 5280..5315 +
1682586736.0137506-CDS-C-australica_Contig_1001:5505..5562	1682586736.0137506-CDS-C-australica_Contig_1001:5505..5562	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1001 5506..5562 +
1682586736.0217242-CDS-C-australica_Contig_1001:5645..5924	1682586736.0217242-CDS-C-australica_Contig_1001:5645..5924	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1001 5646..5924 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_1001:3626..6802+
coding sequence from alignment at C-australica_Contig_1001:3626..6802+

protein sequence of mRNA_C-australica_Contig_1001.2.3

>prot_C-australica_Contig_1001.2.3 ID=prot_C-australica_Contig_1001.2.3|Name=mRNA_C-australica_Contig_1001.2.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=329bp
MAAAKRDSEAAFHEDERRRKEERAVASSGKTRSRRSSKEGHGEDKPPGKS
GTEKQKNSCRRSTASGGAGGPRKRSTDPAAAAATVAPAEDILSANPAVFA
IATDNGSFDPLDCGVSSVSASASKVDSAAVLQLGMSFSSVNVSYQDMIQQ
QCLPEPPAEGAPMPDQDEAKKDLWELAKHSSFVNFDDITDTRDKKSVQKQ
LRVTPDNRTLAELAASKQQHQKGTESQPAMMQPIDSVNGMSAPLQQQPQQ
QQQQYIQQQQLQYGQQLPMHPQQFMMQQQSTMSVDAAFHPEYRVNAVAQQ
HNQVCVCPSCFSPPPPKATDSQIRVDPS*

mRNA from alignment at C-australica_Contig_1001:3626..6802+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_1001.2.3 ID=mRNA_C-australica_Contig_1001.2.3|Name=mRNA_C-australica_Contig_1001.2.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3177bp|location=Sequence derived from alignment at C-australica_Contig_1001:3626..6802+ (Chrysoparadoxa australica CS_1217)
TACGAGTTCTCCTTGGACTCCAAGCCCTTTAGCAGCTGGCCAAGGGTGAG
TAATGCATCCCGCTGTACCCGGCACGTACTGACCTCATACCCCTTGCTTT
GGACTAGGTTGACCCCCACCTGGCAGCATCAATGGCAGCGGCAAAGCGAG
ACAGTGAGGCTGCATTCCATGAAGATGAGAGAAGGCGAAAGGAGGAGAGG
TCCTCCTGACCTCATCCACGACTCTTGACCCTTGCCTTGGCCTGGCCTCC
AGCACTGGGACTTGACTGTTCCCGTGTGAGCCAACTGAATGCGGACCTAG
AGCTGTATTACGCCGGGCTTTCTTGTCCTGACTTGAATCTCTTACAGGGC
GGTGGCATCTTCAGGAAAGACTAGGTCACGGCGATCCAGTAAAGAGGGCC
ATGGAGAGGACAAGCCTCCAGGTCATGGAACAAAAGACTGGGCCTTTGGC
AGCAGTGATAACGCATAACTGGCATGATGAAAATGCAGTCCCTTGAACAG
GCTTTGCCTTGTCCTGGACTTGGGCCGCTCAAGCTCATGTGTTTCCTATT
CCCTGCTTCCACCTGCGCAGGCAAGTCAGGGACAGAGAAGCAAAAGAACA
GCTGTAGACGCAGCACTGCATCTGGAGGTGCAGGAGGTAATTGTGAGCTC
TCACTTCCCTAGGTATTCTTTTACCCATTCTTTCATCTTTCATCTTAGGT
CCCCGCAAGCGCTCGACTGACCCTGCTGCGGCTGCTGCAACTGTTGCTCC
TGCGGAGGACATCCTATCTGCCAACCCAGCTGTTTTTGCTATTGCTACAG
ATAATGGATCTTTTGATCCACTGGATTGCGGCGTTTCCAGTGTCAGTGCC
TCTGCAAGCAAAGGTGAAGCAGTTGTCCATGAGAAGTATGAAGGCTTGGG
CAGATATCGAGGCTCTCCTGCATAGTGCAGCTGTGCTCTAGCCTGATTTA
CCCTGCTTGCCTCTTTTGTGCACTTTAGTGGACAGTGCAGCTGTGCTCCA
GCTCGGAATGAGTTTCTCTTCCGTGAATGTAAGCTATCAGGACATGATCC
AACAACAGTGCCTTCCCGAGCCTCCAGCAGAGGTCAGTAGCGGGTGATCT
TTATCTCCCCATGCTCTGGTAGGAGGTTTAGCCTTTTTGGTGTATGGTGC
TTCTGCTTTACCATTTCCCACTGTTTATATTCTTTGGCTTTTGCCTCTCT
GCCCCCTATCCTCTGTATCTCATGTGCGCTATCAGGGAGCACCTATGCCA
GACCAAGATGAAGCGAAAAAGGATTTATGGGAGGTGAGACCTGGTGCCCT
AGCTCAACATCAGCTGCAGGCCTGCCCCACGTCACCTACCCTAGGTGGAG
GTTGGCTGTGGACATGTCGTCTACTTTACTGGAGTATCCAAAACAAAAAG
CTCACTGTTAGTTCATTGGGTGGACACGCTGACCTCAGACGCCAAATCCC
ATTAATACGGCTTTCCTCAGCTGGCAAAGCACAGCAGCTTTGTCAACTTT
GATGACATTACGGACACGAGGGACAAGAAGAGTGTGCAAAAGCAACTCAG
GGTTACACCGGTAAGGGCAGGGATAAGCATATTGGCGCACCGGGTTCAGC
TTTCTACTGCAACATTGTTGAACCAGCGAAGTCACTAAGTCATTGTTTTG
GCAGGACAATCGCACCCTAGCCGAGCTAGCAGCAAGCAAGGTTTGGCCTT
GCCGGATCTTCTTCTCTCCGCCCCTTACCTCGCTTTGTTATGCGAAGCGC
TAACTTCAGCTTTGTTGTGCTTCGCTGACAAATTGTGTAACTTTTCTTCA
ACCTCACCTTACTTGCCTTTTCAGCTACTTGCCTTTGCTTGTCCAGTTGA
CAGTTATATTTTGATTTTATGCCTTTCCAGCAGCAGCACCAAAAGGGCAC
GGAGTCGCAACCTGCTATGATGCAACCTATAGACTCGGTAGGTGCAAAGC
AACGGTTGGAAAGCGCACTCTTGTGGTGCAGAGCCACACCTTGCCTCACC
ATCTTCCCTACTCTTCATAGGTTAATGGCATGAGCGCTCCATTGCAGCAG
CAGCCGCAGCAGCAGCAGCAGCAATATATCCAGCAGCAACAGCTGCAGTA
CGGACAGCAGCTGCCTATGCACCCCCAGCAATTCATGATGCAGCAGCAAT
CAACCATGTCTGTTGATGCAGCCTTCCACCCGGAATACCGAGTGAATGCT
GTTGCGCAGCAACACAACCAAGTATGTGTCTGCCCCTCTTGCTTCAGCCC
GCCACCCCCCAAGGCAACTGACTCCCAGATTCGCGTAGATCCTAGCTAAT
TCGGATTTTCTGATTTTCTTCTAGGCTTGGGCGTATTCACCGAACCAACC
CTATCCTGGACAGCGTTAAATGGCTTTAGGTGAAAGCCCAAGTCAAGGAA
TGCCATTGAGTTCCCTGAACATTTGCAGCATTCCCATTTCTTGCTGGGAA
GCAACATTCCAGCGAGCCGGGTCACAAGCTTTTGGCTTCTGAGTCGGCAA
TGCTTTGGCGCAAGCTCAAAAAGAAAATCCAATTACTTTTCGCTCTTCCG
TGCTCTGTTTCCTTTCCGCCTTTCCTCCAGCCTTGCTCTCCTAGGAAAAG
AATCGGGCTTGGGTACTCATGTTTAGGCTCGTTTGGCAACACTATCTGAG
CTGGGTTCCTCCTATCTTCCCACTTTTAACTCGCCCATGCCTCACTCCAG
CTTACCTATTGTCGGCCCCTCCCTTCCTGGTGCCTCCTGTAAGGTTAAAA
CGGTTACAGGAGAGGGGAGAACTGGGGTCAGTGTCAAATACTATGATAAA
ACCAGCTCAAGAATGTAGAGCTTGGCAGGATTGTTAAGGAGCCCGGATCA
GCTAAACATCTGGCTCACCTATCTTGGATGAGGTCTTTTTTTCTCGCACT
TTACTGGTGGCAGCTTGCTTTGCCTTAAAGCTGAGATTTAGTGCATGCGT
CAGGGTTACGGCCTGTACGATGTCAATTCATGGACAGCTAAAAGCTTCCG
GCTTAGGGTGGCGCCAGGACAGGGCGCAGGTGGGTCATGGCCATCTGCAC
TAACACCAAATAACCTAGTCAGGATGCTGTTTGGGGGCAGCGGTCCTGAG
CTGACGGAGGAACCATAAGTCTCACCGCCTATATTCCTCAGTCTCTGTAT
TGAGTGTTCTCATTGCAAGGATCCTCG

Coding sequence (CDS) from alignment at C-australica_Contig_1001:3626..6802+

>mRNA_C-australica_Contig_1001.2.3 ID=mRNA_C-australica_Contig_1001.2.3|Name=mRNA_C-australica_Contig_1001.2.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=987bp|location=Sequence derived from alignment at C-australica_Contig_1001:3626..6802+ (Chrysoparadoxa australica CS_1217)
ATGGCAGCGGCAAAGCGAGACAGTGAGGCTGCATTCCATGAAGATGAGAG
AAGGCGAAAGGAGGAGAGGGCGGTGGCATCTTCAGGAAAGACTAGGTCAC
GGCGATCCAGTAAAGAGGGCCATGGAGAGGACAAGCCTCCAGGCAAGTCA
GGGACAGAGAAGCAAAAGAACAGCTGTAGACGCAGCACTGCATCTGGAGG
TGCAGGAGGTCCCCGCAAGCGCTCGACTGACCCTGCTGCGGCTGCTGCAA
CTGTTGCTCCTGCGGAGGACATCCTATCTGCCAACCCAGCTGTTTTTGCT
ATTGCTACAGATAATGGATCTTTTGATCCACTGGATTGCGGCGTTTCCAG
TGTCAGTGCCTCTGCAAGCAAAGTGGACAGTGCAGCTGTGCTCCAGCTCG
GAATGAGTTTCTCTTCCGTGAATGTAAGCTATCAGGACATGATCCAACAA
CAGTGCCTTCCCGAGCCTCCAGCAGAGGGAGCACCTATGCCAGACCAAGA
TGAAGCGAAAAAGGATTTATGGGAGCTGGCAAAGCACAGCAGCTTTGTCA
ACTTTGATGACATTACGGACACGAGGGACAAGAAGAGTGTGCAAAAGCAA
CTCAGGGTTACACCGGACAATCGCACCCTAGCCGAGCTAGCAGCAAGCAA
GCAGCAGCACCAAAAGGGCACGGAGTCGCAACCTGCTATGATGCAACCTA
TAGACTCGGTTAATGGCATGAGCGCTCCATTGCAGCAGCAGCCGCAGCAG
CAGCAGCAGCAATATATCCAGCAGCAACAGCTGCAGTACGGACAGCAGCT
GCCTATGCACCCCCAGCAATTCATGATGCAGCAGCAATCAACCATGTCTG
TTGATGCAGCCTTCCACCCGGAATACCGAGTGAATGCTGTTGCGCAGCAA
CACAACCAAGTATGTGTCTGCCCCTCTTGCTTCAGCCCGCCACCCCCCAA
GGCAACTGACTCCCAGATTCGCGTAGATCCTAGCTAA

mRNA_C-australica_Contig_1001.2.3 (mRNA) Chrysoparadoxa australica CS_1217

ZOOM

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POSITION

0