mRNA_C-australica_Contig_1000.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Stop	1
Start	1
Model size	1387
Hectar predicted targeting category	other localisation
Exons	11
Cds size	609

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-australica_Contig_1000.4.1	prot_C-australica_Contig_1000.4.1	Chrysoparadoxa australica CS_1217	polypeptide	C-australica_Contig_1000 9153..10939 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682586735.4666204-UTR-C-australica_Contig_1000:8258..8283	1682586735.4666204-UTR-C-australica_Contig_1000:8258..8283	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_1000 8259..8283 +
1682586735.4749298-UTR-C-australica_Contig_1000:8435..8651	1682586735.4749298-UTR-C-australica_Contig_1000:8435..8651	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_1000 8436..8651 +
1682586735.484395-UTR-C-australica_Contig_1000:8773..8854	1682586735.484395-UTR-C-australica_Contig_1000:8773..8854	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_1000 8774..8854 +
1682586735.4938715-UTR-C-australica_Contig_1000:8999..9152	1682586735.4938715-UTR-C-australica_Contig_1000:8999..9152	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_1000 9000..9152 +
1682586735.576176-UTR-C-australica_Contig_1000:10939..11242	1682586735.576176-UTR-C-australica_Contig_1000:10939..11242	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_1000 10940..11242 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682586735.502907-CDS-C-australica_Contig_1000:9152..9166	1682586735.502907-CDS-C-australica_Contig_1000:9152..9166	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1000 9153..9166 +
1682586735.5116327-CDS-C-australica_Contig_1000:9255..9346	1682586735.5116327-CDS-C-australica_Contig_1000:9255..9346	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1000 9256..9346 +
1682586735.5207324-CDS-C-australica_Contig_1000:9594..9678	1682586735.5207324-CDS-C-australica_Contig_1000:9594..9678	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1000 9595..9678 +
1682586735.529727-CDS-C-australica_Contig_1000:9998..10115	1682586735.529727-CDS-C-australica_Contig_1000:9998..10115	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1000 9999..10115 +
1682586735.5386643-CDS-C-australica_Contig_1000:10204..10277	1682586735.5386643-CDS-C-australica_Contig_1000:10204..10277	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1000 10205..10277 +
1682586735.5475097-CDS-C-australica_Contig_1000:10412..10478	1682586735.5475097-CDS-C-australica_Contig_1000:10412..10478	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1000 10413..10478 +
1682586735.5572228-CDS-C-australica_Contig_1000:10694..10818	1682586735.5572228-CDS-C-australica_Contig_1000:10694..10818	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1000 10695..10818 +
1682586735.5668154-CDS-C-australica_Contig_1000:10899..10939	1682586735.5668154-CDS-C-australica_Contig_1000:10899..10939	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1000 10900..10939 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_1000:8259..11242+
coding sequence from alignment at C-australica_Contig_1000:8259..11242+

protein sequence of mRNA_C-australica_Contig_1000.4.1

>prot_C-australica_Contig_1000.4.1 ID=prot_C-australica_Contig_1000.4.1|Name=mRNA_C-australica_Contig_1000.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=203bp
MLQSRYMMGRGAPTGHSGDEHTWWSEIQPVTVPQQEKALQICKAPAGGGE
GAHWTRFETTKLEVSQQVLGHCVTFLRVRAHLFPLEPLDFSQLGEVLAAC
VKVYQIQEGKAQASGDGMITGGGPADGTSAAAITGYEFLSASTSYIVEGL
LAALYDLVSATKGAENARLSAALMPSLEALINETKPFLSRAARRIMEKLS
AN*

mRNA from alignment at C-australica_Contig_1000:8259..11242+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_1000.4.1 ID=mRNA_C-australica_Contig_1000.4.1|Name=mRNA_C-australica_Contig_1000.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2984bp|location=Sequence derived from alignment at C-australica_Contig_1000:8259..11242+ (Chrysoparadoxa australica CS_1217)
GAGTGCGCTTACGTTCATTACGCAGGTATGACAAGACAGGCATGCATGAG
CCAAGCCTGGCTTAGCTTACCTTCTTATGTGACCGAGCCAGGCCCTGACT
AGTAGCATCAGGTAGCACACTTGTAGTAGCTGCATACTAGTAGTAGTTGT
ATCTTACGAAACGCTGTCCCATCACAGGTAGCTTGCAGTCGTGATGGTGC
ACTGGCCTTAGTGGACTGCAGGGTACTGGAACACTTAACGGAAAGCAGCT
TGCTTGCTGCTCCTGCTGCTCCTGCTGCTGCTGGTGCTGGGGCTGGTGCA
GTTGCAGGGGGTGAGCACTCATGGCTACAGGCATTGAGGTTATTAGAGGC
TACAGTCTCAAGCTTGCCTGACAATGAGAAAGTCATCACCCAGGTACGCT
GGTGACGCGTGCTCAGATGAGTGAGCGCACACTGAAAGATGATTGAGAGC
AACCTCCAGTGATGTGTAAGAGACACCCATACTCTTCTGGCCCTTGACCT
TTTGGCACTCGTCAGGTATTGGAGCTCTTGCGGCATCACCACAAGCTCTG
CAGCCACTTACTCAAGCTGAGAAGCCCAAGTTGCACAGGGCTGCAGGTGG
GAACTGCTTGACTGTAACAAGCGCCTGCACTGCACCAAACCGCACAAACG
CTCTTCTGCTCACTTATTTTCCCTTTGCTTGGCTTGTGCTGCTCCTCTCT
CTCACACAACGTAATGCAACACTCTTCTTTTCATGCCACAGGCTGCTGGA
TGCGTCGTAAGCCTGCTTGGTCACTGTACCAAGTCACCCTATGAGGGCCT
CTATCAAGAGAGGCTGGGCAGATACAGCGATAAGCTCAGCGCCCAGGTCA
AGGGATTGTTACTGAGGCTTGGGAAGTATCCCTACCCAGCTTGGATGCTG
CAGAGCCGGTAATGATATCATGGCACCGGCAAATCATAGCCATGCCATAG
CACTGGCAACTGCATCTAACACCACCATGGTTGGTTGCCTGTGTCAGGTA
TATGATGGGAAGGGGAGCTCCCACAGGTCACTCTGGTGATGAACACACTT
GGTGGAGTGAAATACAGCCTGTCACTGTTCCGCAGCAGGTGCGTCGAGAG
ATGCATTCGTGTTATGCCGTCCCGTCATGCACTTGTTGCTCCCCCTGCCA
GTGATGTCTGCTTATCGCTACAACAGACAGCCATTGCAACTCCTCAATGT
TTTGTTGCAATGAAATGTATGCATGCTGGCAGACCCCCAGTCACCAATGG
CCAAATGGCTCGTTTGCCTTTGCCTTTGCCTTGAGCCTGAGGTAGCACTG
AAGTATTATTATTGTGGACTCTCTCTCTCATCTCAGGAGAAGGCCCTGCA
GATCTGTAAAGCACCAGCAGGTGGGGGGGAGGGAGCGCATTGGACTCGCT
TTGAGACGACAAAGCTGGAGGTGAAGAACCTAGTGTTGACTGGTTTGACA
ACTCTTGATTCTTTCAACGGCCCTCCACTCGATTGAATGATTATTGATTG
GTCTTTGAATGACTGATGCTGATGCGTAGAGCCTTGCTTTTTTAAGATGA
TGCTGTGCGTTCGTTTGAGTGAATGCTGGGTCATCAGTCTTGATGGCCAT
GATGTAGCGTAGTGTGACCAAACTGCGTCTTCCATGTCTTGAGTGCTTGG
CTTGAGCTTGCGGGCGACTGGGATCAGCTGGCTTGTTCTCTCACTTCACA
CTTTTGTGTTTGCACTTCCACGATGCTCCTGCTCCTCCAGGTTTCACAAC
AGGTTCTCGGGCATTGCGTGACTTTCTTACGCGTCCGTGCCCATCTCTTC
CCATTGGAGCCTCTGGACTTCTCTCAGCTCGGTGAAGTGCTGGCAGCCTG
TGTGAAGGCAAGATGAGGAAAAGCTGCTTGGCTGCACTTGCCCCTAATTA
TGTCATCTCATACCACACTCACTCACAGCACCCACCTCTCACTCAGGTGT
ACCAGATACAAGAGGGCAAAGCACAAGCATCAGGGGATGGCATGATTACT
GGGGGAGGGCCAGCTGATGGTGAGGAGCCTCCCCCTTAAAAGACTCCACC
TTGCTATTGAGTTGCATGAGTTGCATGGATGCTTTCATGTTGAGTGCGTT
GACCTTCACTCATCAGAATGCTTCGCATCGCTCCGCATTGCTTTGCTCTC
TCAGGAACTTCTGCTGCAGCAATTACAGGTTATGAGTTTTTGTCGGCAAG
CACCAGCTACATAGTTGAGGGTACGTTTGTGTAACTCTTACCACTGCTCA
CAACCTTACGTTGCTCCCAAGTTAATCTCATTTGGCTTAAGTTATGATTT
ATCTTTTTGCTTTTGCTTGCTAGCTTACTGGACAAGATGCCTCCTCCCCT
CAGTTAATCACTCACTCGCATTCAGCCACGACCACTACCACCAGTGCTAA
CTTTCGCTTGACCCATTGATCCTTTTCCATGAACAGGGCTACTAGCTGCT
CTCTATGACTTGGTTTCTGCAACAAAAGGAGCCGAGAATGCCAGGCTCTC
AGCTGCCCTTATGCCCTCATTGGAGGCCCTTATCAATGAGACTAAGCCCT
TCCTTAGCAGGTCAGTTGCATCACTTGCATCATTTGCATCTAACTTGTCT
TCTCTTGCTCACTGGCTTGACTTGCTCTTGCACTTCCTCAGAGCTGCGAG
AAGGATCATGGAGAAGCTCTCAGCTAACTGAGAACTGATGTGGGAGAGCT
AGCTCAACACAGGCAAACCTGCTCAACCTGCTGAACTGCTGGATGGGGAA
AGCTATGTCATGGGGCTGTCCATGCTGCGACTCTGCTTCTGTTTTGCGTG
TTCATCGGCTTGCTTGTCTTGTCACGTATCATGCTTTATGACAGTGCACT
GCACAGGTGCAGGATATGCAACTGCACAAGCTACAGAGATAGGAGGGGGG
GGAGGAATCCTCACATATTTTCTTTTCTAGATCCTAGATAACACTGGTGA
TGTGACACTAGGCAGGCTAGGCTTAAGCTTTATT

Coding sequence (CDS) from alignment at C-australica_Contig_1000:8259..11242+

>mRNA_C-australica_Contig_1000.4.1 ID=mRNA_C-australica_Contig_1000.4.1|Name=mRNA_C-australica_Contig_1000.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=609bp|location=Sequence derived from alignment at C-australica_Contig_1000:8259..11242+ (Chrysoparadoxa australica CS_1217)
ATGCTGCAGAGCCGGTATATGATGGGAAGGGGAGCTCCCACAGGTCACTC
TGGTGATGAACACACTTGGTGGAGTGAAATACAGCCTGTCACTGTTCCGC
AGCAGGAGAAGGCCCTGCAGATCTGTAAAGCACCAGCAGGTGGGGGGGAG
GGAGCGCATTGGACTCGCTTTGAGACGACAAAGCTGGAGGTTTCACAACA
GGTTCTCGGGCATTGCGTGACTTTCTTACGCGTCCGTGCCCATCTCTTCC
CATTGGAGCCTCTGGACTTCTCTCAGCTCGGTGAAGTGCTGGCAGCCTGT
GTGAAGGTGTACCAGATACAAGAGGGCAAAGCACAAGCATCAGGGGATGG
CATGATTACTGGGGGAGGGCCAGCTGATGGAACTTCTGCTGCAGCAATTA
CAGGTTATGAGTTTTTGTCGGCAAGCACCAGCTACATAGTTGAGGGGCTA
CTAGCTGCTCTCTATGACTTGGTTTCTGCAACAAAAGGAGCCGAGAATGC
CAGGCTCTCAGCTGCCCTTATGCCCTCATTGGAGGCCCTTATCAATGAGA
CTAAGCCCTTCCTTAGCAGAGCTGCGAGAAGGATCATGGAGAAGCTCTCA
GCTAACTGA

mRNA_C-australica_Contig_1000.4.1 (mRNA) Chrysoparadoxa australica CS_1217

ZOOM

x 1

POSITION

0