mRNA_C-australica_Contig_100.1.3 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Stop	1
Start	1
Model size	1553
Hectar predicted targeting category	other localisation
Exons	8
Ec32 ortholog description	Conserved Cys-containing small protein
Ec32 ortholog	Ec-08_001970.1
Cds size	474

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-australica_Contig_100.1.3	prot_C-australica_Contig_100.1.3	Chrysoparadoxa australica CS_1217	polypeptide	C-australica_Contig_100 4965..5763 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682586733.0578394-UTR-C-australica_Contig_100:4914..4964	1682586733.0578394-UTR-C-australica_Contig_100:4914..4964	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_100 4915..4964 -
1682586733.1056814-UTR-C-australica_Contig_100:5763..6154	1682586733.1056814-UTR-C-australica_Contig_100:5763..6154	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_100 5764..6154 -
1682586733.1175551-UTR-C-australica_Contig_100:6417..6535	1682586733.1175551-UTR-C-australica_Contig_100:6417..6535	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_100 6418..6535 -
1682586733.127377-UTR-C-australica_Contig_100:6687..6825	1682586733.127377-UTR-C-australica_Contig_100:6687..6825	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_100 6688..6825 -
1682586733.1385267-UTR-C-australica_Contig_100:7125..7189	1682586733.1385267-UTR-C-australica_Contig_100:7125..7189	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_100 7126..7189 -
1682586733.148213-UTR-C-australica_Contig_100:7325..7643	1682586733.148213-UTR-C-australica_Contig_100:7325..7643	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_100 7326..7643 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682586733.0701063-CDS-C-australica_Contig_100:4964..5201	1682586733.0701063-CDS-C-australica_Contig_100:4964..5201	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_100 4965..5201 -
1682586733.0795844-CDS-C-australica_Contig_100:5369..5476	1682586733.0795844-CDS-C-australica_Contig_100:5369..5476	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_100 5370..5476 -
1682586733.0880136-CDS-C-australica_Contig_100:5543..5611	1682586733.0880136-CDS-C-australica_Contig_100:5543..5611	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_100 5544..5611 -
1682586733.0961626-CDS-C-australica_Contig_100:5701..5763	1682586733.0961626-CDS-C-australica_Contig_100:5701..5763	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_100 5702..5763 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_100:4915..7643-
coding sequence from alignment at C-australica_Contig_100:4915..7643-

protein sequence of mRNA_C-australica_Contig_100.1.3

>prot_C-australica_Contig_100.1.3 ID=prot_C-australica_Contig_100.1.3|Name=mRNA_C-australica_Contig_100.1.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=158bp
MKTPLGDYKGVEEWTAVGKSKEELHQAYQDCMLGHYRLFVAGAGVGLMVG
ITRKNYWPLVTGGFVGSMGDYFEAQGACKDRHDAWMACREREAEEEAQRR
QQDLAFTYTDAELAAKGWKRHGEGELGYNDEELMKAWEKSQQEREAKERG
AAHGKAS*

mRNA from alignment at C-australica_Contig_100:4915..7643-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_100.1.3 ID=mRNA_C-australica_Contig_100.1.3|Name=mRNA_C-australica_Contig_100.1.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2729bp|location=Sequence derived from alignment at C-australica_Contig_100:4915..7643- (Chrysoparadoxa australica CS_1217)
GAGGAGGGAGGGGGGAGGGATTGAGAGTTTCTGTCTTGCTACATGCAATG
GCATCAAAGTCTGTTGGTCAAGAGACAGGACTTTCTCCCATACCCCCCAA
CCACCATTTCTTCCAGCTTGCCAGTTACCTGTTGCCTATGTGTGCGCCCT
GCATCCTAGTGCTTACCTCAACTACTCACCAAGGTGGGCTAGCTTCCGCC
TCTGGAGGTACTGCTGTATGGTTTGGTGTTGGAGGAGGTCTAGAAGTTGG
AGCAGGCAGGGGTAGTCTTCAGGAGAGGTTGCCATGGGTATAGTAATGCT
GTGACGCCTGGTTCCATGGTGAGAACGCTATGATATGCCTTACCGTGCTG
TGCTGTGCTGTGTGTGTGCTGTGCTTCATCAATCCGTGCCCCTATACATG
GACCTACTGATTTCTCCTCTGTCCTGTCTTGTTCTCTCCTTTGACGCACA
GCAGTCACCGGAACAATGCAAAGCATCAACGCTGGCCTGAAGAGCAGCAT
GTTACGCCAGCAGCCTTGGTGAGCATAGGGCGAGATGAAAGTTTAAAAGT
AGCACGGCATGCAGATACGGAAGAACCGAAGGGCAATAGCTTTGGGCTAG
AGCTTATCCTAACATGTTATGTCCCTGCGCTCTATCTACCACGCGTTCAG
TCAATCACTACTTGAAAGCTTGTGTTTGTCATTATCATTCTAGCTTATGC
CTGCTAATGCCTAATAACTCTTCCTGATTCTTGAGTGAAAAGGAATGACT
CCTTCCTCTTGACATTCTATTCCAACCTCACTCACTCCCGCCCACGTAAA
CCCTCTGTCATCTTCCAGTATGATCAACAGACCCTGACCAACAACAGCGA
GTAACTGGTCAGCATTTTTTTAATGTATGCGTACCTCACATGGCCCATCT
ATGACCCGAGCTTCTGACCTAGGAGATAGATACGTTGTCCGCACCAACCA
ATCTGAGCCATGGAAGCAACGTTGTGAGTGAAAGGGCACATGAATGAGAG
AAGAAATGGTACAAAATACAACCACTTTAAAGGCTAGGTTAAGAGATAAG
ACTGCTATCATGAAAGCAATGTAATTAATGCATTAGCTATGTTAGGCGTA
CCTTGCAGGTTTGAAATGCTGCCGCAAATTGTGAGAGGTATGGCTCAAGC
CTTCTGTTGCCTTTCTCCTTACATTGATCTAGCTCCTATCAGCCTTTTAT
GAAGAGGGTATCTGTGCTTCATACCTGTCAGCACGGGTGGTGCAGTGGGA
TAAGTAAAGTGGGCCAGTGAGTTTGGTTGAAAAGCTGAGTAGCAAGACAG
AGGAATAGTGGCATAGGGTGGCTCAGGTGCCTACTTTTCAGGGCTGGGGT
CCTCAGAGGGGAAGCTAACCTATCCCTCCCCTTTTCTTGGCCAGCAAAAG
ATGTTCTGACCTGTCCCCTAACCTAAATCAAGAATTCAATTCCCTTGTCA
CCTCCATCTCCTAATGGCGCTCCCCCTTTATCCATACCTTTTCCCCTGTA
TTATGAGCTCTTGATGCTCTCCTGAGGCCTTAGGATCCTCCAAGGGGTAG
ACAGCCAGCCTCCTCCGCTCTCTTTTTTCGCGCCCCTGGTCCCAGAAGGG
CGCATCATCGCCCAGGTCACGCCTTTCTCTCAGGGTGCCGTTTTGGCAGC
TAGGACATCAAGCGTCTCTCTTACAGCAACATCGCCCCTCTCTCTGTCTC
TCTTGCCTCGTCTGTTGGATACCATTGAAAATTGATCCCTAGTTGCTACA
GAGTGCTTGTGTCGACGCAGGGATAGAGCTTTCCCTTTGCTGTACAGTCA
CACAACAAGGACAAGGACCCTGCCGCCTCTCACCCTCCTTCTTGCTCTTT
AGCTCTCGGGTCGAGGGGGGTTCAAGCAAGATGAAGACTCCTCTTGGGGA
TTATAAAGGCGTGGAGGAGTGGACAGCAGTCGGGAAGAGCAAGTAGGAGC
CCATCGGTGCCTGGTCGCCATCCGAAGTGATCCTAGATGAGGGAAGCTGA
TGTTGACCTCGCTCCACTGTGCCTCATCATAGGGAAGAGTTGCACCAGGC
GTACCAGGACTGCATGTTGGGGCATTACAGACTCTTCGTAGCCGGAGCAG
GTGCATGCACTTCTCGAACGACCTTGTGTGGCATTGCCCCAACCACTCTG
CAATCATACTCTCCTAGGTGTGGGGCTCATGGTAGGCATCACCCGCAAGA
ACTACTGGCCGCTAGTAACCGGAGGCTTTGTCGGCAGCATGGGGGACTAT
TTTGAGGCGCAGGGGGCATGCAAGGTGAGCATGCCAAGCATCAAAACAAT
CAAGCAAGAAGGGGGACTGAGTACAGGGTAAGAGTGCTCGGCTAGGTGTT
GCAGCCTGGTGTGAAAGTGATGTCATCTTGAGGCTCGGCCAGGCCCCCTC
TTTTCCCTCCATGTCTCAACACCACAACGGTTCCTTCCTCAGGACCGGCA
TGATGCCTGGATGGCATGCAGGGAGAGGGAAGCGGAAGAAGAGGCTCAGC
GCCGGCAGCAGGACTTGGCCTTTACGTACACCGACGCTGAGCTCGCTGCC
AAAGGGTGGAAGAGACATGGCGAGGGCGAGCTTGGGTACAATGATGAAGA
GCTCATGAAGGCTTGGGAGAAGAGCCAGCAGGAGCGGGAGGCAAAAGAGA
GAGGGGCTGCCCATGGGAAAGCTTCTTGACTGTGACACGACGTAGTACAT
TTTTGGTAGCAACTTCGTGGTCAAGCTGT

Coding sequence (CDS) from alignment at C-australica_Contig_100:4915..7643-

>mRNA_C-australica_Contig_100.1.3 ID=mRNA_C-australica_Contig_100.1.3|Name=mRNA_C-australica_Contig_100.1.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=474bp|location=Sequence derived from alignment at C-australica_Contig_100:4915..7643- (Chrysoparadoxa australica CS_1217)
ATGAAGACTCCTCTTGGGGATTATAAAGGCGTGGAGGAGTGGACAGCAGT
CGGGAAGAGCAAGGAAGAGTTGCACCAGGCGTACCAGGACTGCATGTTGG
GGCATTACAGACTCTTCGTAGCCGGAGCAGGTGTGGGGCTCATGGTAGGC
ATCACCCGCAAGAACTACTGGCCGCTAGTAACCGGAGGCTTTGTCGGCAG
CATGGGGGACTATTTTGAGGCGCAGGGGGCATGCAAGGACCGGCATGATG
CCTGGATGGCATGCAGGGAGAGGGAAGCGGAAGAAGAGGCTCAGCGCCGG
CAGCAGGACTTGGCCTTTACGTACACCGACGCTGAGCTCGCTGCCAAAGG
GTGGAAGAGACATGGCGAGGGCGAGCTTGGGTACAATGATGAAGAGCTCA
TGAAGGCTTGGGAGAAGAGCCAGCAGGAGCGGGAGGCAAAAGAGAGAGGG
GCTGCCCATGGGAAAGCTTCTTGA

mRNA_C-australica_Contig_100.1.3 (mRNA) Chrysoparadoxa australica CS_1217

ZOOM

x 1

POSITION

0