Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1553 |
| Hectar predicted targeting category | other localisation |
| Exons | 8 |
| Ec32 ortholog description | Conserved Cys-containing small protein |
| Ec32 ortholog | Ec-08_001970.1 |
| Cds size | 474 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586733.0578394-UTR-C-australica_Contig_100:4914..4964 | 1682586733.0578394-UTR-C-australica_Contig_100:4914..4964 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_100 4915..4964 - |
| 1682586733.1056814-UTR-C-australica_Contig_100:5763..6154 | 1682586733.1056814-UTR-C-australica_Contig_100:5763..6154 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_100 5764..6154 - |
| 1682586733.1175551-UTR-C-australica_Contig_100:6417..6535 | 1682586733.1175551-UTR-C-australica_Contig_100:6417..6535 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_100 6418..6535 - |
| 1682586733.127377-UTR-C-australica_Contig_100:6687..6825 | 1682586733.127377-UTR-C-australica_Contig_100:6687..6825 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_100 6688..6825 - |
| 1682586733.1385267-UTR-C-australica_Contig_100:7125..7189 | 1682586733.1385267-UTR-C-australica_Contig_100:7125..7189 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_100 7126..7189 - |
| 1682586733.148213-UTR-C-australica_Contig_100:7325..7643 | 1682586733.148213-UTR-C-australica_Contig_100:7325..7643 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_100 7326..7643 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586733.0701063-CDS-C-australica_Contig_100:4964..5201 | 1682586733.0701063-CDS-C-australica_Contig_100:4964..5201 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_100 4965..5201 - |
| 1682586733.0795844-CDS-C-australica_Contig_100:5369..5476 | 1682586733.0795844-CDS-C-australica_Contig_100:5369..5476 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_100 5370..5476 - |
| 1682586733.0880136-CDS-C-australica_Contig_100:5543..5611 | 1682586733.0880136-CDS-C-australica_Contig_100:5543..5611 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_100 5544..5611 - |
| 1682586733.0961626-CDS-C-australica_Contig_100:5701..5763 | 1682586733.0961626-CDS-C-australica_Contig_100:5701..5763 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_100 5702..5763 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_100.1.3 >prot_C-australica_Contig_100.1.3 ID=prot_C-australica_Contig_100.1.3|Name=mRNA_C-australica_Contig_100.1.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=158bp
MKTPLGDYKGVEEWTAVGKSKEELHQAYQDCMLGHYRLFVAGAGVGLMVG
ITRKNYWPLVTGGFVGSMGDYFEAQGACKDRHDAWMACREREAEEEAQRR
QQDLAFTYTDAELAAKGWKRHGEGELGYNDEELMKAWEKSQQEREAKERG
AAHGKAS* back to topmRNA from alignment at C-australica_Contig_100:4915..7643- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_100.1.3 ID=mRNA_C-australica_Contig_100.1.3|Name=mRNA_C-australica_Contig_100.1.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2729bp|location=Sequence derived from alignment at C-australica_Contig_100:4915..7643- (Chrysoparadoxa australica CS_1217)
GAGGAGGGAGGGGGGAGGGATTGAGAGTTTCTGTCTTGCTACATGCAATG
GCATCAAAGTCTGTTGGTCAAGAGACAGGACTTTCTCCCATACCCCCCAA
CCACCATTTCTTCCAGCTTGCCAGTTACCTGTTGCCTATGTGTGCGCCCT
GCATCCTAGTGCTTACCTCAACTACTCACCAAGGTGGGCTAGCTTCCGCC
TCTGGAGGTACTGCTGTATGGTTTGGTGTTGGAGGAGGTCTAGAAGTTGG
AGCAGGCAGGGGTAGTCTTCAGGAGAGGTTGCCATGGGTATAGTAATGCT
GTGACGCCTGGTTCCATGGTGAGAACGCTATGATATGCCTTACCGTGCTG
TGCTGTGCTGTGTGTGTGCTGTGCTTCATCAATCCGTGCCCCTATACATG
GACCTACTGATTTCTCCTCTGTCCTGTCTTGTTCTCTCCTTTGACGCACA
GCAGTCACCGGAACAATGCAAAGCATCAACGCTGGCCTGAAGAGCAGCAT
GTTACGCCAGCAGCCTTGGTGAGCATAGGGCGAGATGAAAGTTTAAAAGT
AGCACGGCATGCAGATACGGAAGAACCGAAGGGCAATAGCTTTGGGCTAG
AGCTTATCCTAACATGTTATGTCCCTGCGCTCTATCTACCACGCGTTCAG
TCAATCACTACTTGAAAGCTTGTGTTTGTCATTATCATTCTAGCTTATGC
CTGCTAATGCCTAATAACTCTTCCTGATTCTTGAGTGAAAAGGAATGACT
CCTTCCTCTTGACATTCTATTCCAACCTCACTCACTCCCGCCCACGTAAA
CCCTCTGTCATCTTCCAGTATGATCAACAGACCCTGACCAACAACAGCGA
GTAACTGGTCAGCATTTTTTTAATGTATGCGTACCTCACATGGCCCATCT
ATGACCCGAGCTTCTGACCTAGGAGATAGATACGTTGTCCGCACCAACCA
ATCTGAGCCATGGAAGCAACGTTGTGAGTGAAAGGGCACATGAATGAGAG
AAGAAATGGTACAAAATACAACCACTTTAAAGGCTAGGTTAAGAGATAAG
ACTGCTATCATGAAAGCAATGTAATTAATGCATTAGCTATGTTAGGCGTA
CCTTGCAGGTTTGAAATGCTGCCGCAAATTGTGAGAGGTATGGCTCAAGC
CTTCTGTTGCCTTTCTCCTTACATTGATCTAGCTCCTATCAGCCTTTTAT
GAAGAGGGTATCTGTGCTTCATACCTGTCAGCACGGGTGGTGCAGTGGGA
TAAGTAAAGTGGGCCAGTGAGTTTGGTTGAAAAGCTGAGTAGCAAGACAG
AGGAATAGTGGCATAGGGTGGCTCAGGTGCCTACTTTTCAGGGCTGGGGT
CCTCAGAGGGGAAGCTAACCTATCCCTCCCCTTTTCTTGGCCAGCAAAAG
ATGTTCTGACCTGTCCCCTAACCTAAATCAAGAATTCAATTCCCTTGTCA
CCTCCATCTCCTAATGGCGCTCCCCCTTTATCCATACCTTTTCCCCTGTA
TTATGAGCTCTTGATGCTCTCCTGAGGCCTTAGGATCCTCCAAGGGGTAG
ACAGCCAGCCTCCTCCGCTCTCTTTTTTCGCGCCCCTGGTCCCAGAAGGG
CGCATCATCGCCCAGGTCACGCCTTTCTCTCAGGGTGCCGTTTTGGCAGC
TAGGACATCAAGCGTCTCTCTTACAGCAACATCGCCCCTCTCTCTGTCTC
TCTTGCCTCGTCTGTTGGATACCATTGAAAATTGATCCCTAGTTGCTACA
GAGTGCTTGTGTCGACGCAGGGATAGAGCTTTCCCTTTGCTGTACAGTCA
CACAACAAGGACAAGGACCCTGCCGCCTCTCACCCTCCTTCTTGCTCTTT
AGCTCTCGGGTCGAGGGGGGTTCAAGCAAGATGAAGACTCCTCTTGGGGA
TTATAAAGGCGTGGAGGAGTGGACAGCAGTCGGGAAGAGCAAGTAGGAGC
CCATCGGTGCCTGGTCGCCATCCGAAGTGATCCTAGATGAGGGAAGCTGA
TGTTGACCTCGCTCCACTGTGCCTCATCATAGGGAAGAGTTGCACCAGGC
GTACCAGGACTGCATGTTGGGGCATTACAGACTCTTCGTAGCCGGAGCAG
GTGCATGCACTTCTCGAACGACCTTGTGTGGCATTGCCCCAACCACTCTG
CAATCATACTCTCCTAGGTGTGGGGCTCATGGTAGGCATCACCCGCAAGA
ACTACTGGCCGCTAGTAACCGGAGGCTTTGTCGGCAGCATGGGGGACTAT
TTTGAGGCGCAGGGGGCATGCAAGGTGAGCATGCCAAGCATCAAAACAAT
CAAGCAAGAAGGGGGACTGAGTACAGGGTAAGAGTGCTCGGCTAGGTGTT
GCAGCCTGGTGTGAAAGTGATGTCATCTTGAGGCTCGGCCAGGCCCCCTC
TTTTCCCTCCATGTCTCAACACCACAACGGTTCCTTCCTCAGGACCGGCA
TGATGCCTGGATGGCATGCAGGGAGAGGGAAGCGGAAGAAGAGGCTCAGC
GCCGGCAGCAGGACTTGGCCTTTACGTACACCGACGCTGAGCTCGCTGCC
AAAGGGTGGAAGAGACATGGCGAGGGCGAGCTTGGGTACAATGATGAAGA
GCTCATGAAGGCTTGGGAGAAGAGCCAGCAGGAGCGGGAGGCAAAAGAGA
GAGGGGCTGCCCATGGGAAAGCTTCTTGACTGTGACACGACGTAGTACAT
TTTTGGTAGCAACTTCGTGGTCAAGCTGT back to topCoding sequence (CDS) from alignment at C-australica_Contig_100:4915..7643- >mRNA_C-australica_Contig_100.1.3 ID=mRNA_C-australica_Contig_100.1.3|Name=mRNA_C-australica_Contig_100.1.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=474bp|location=Sequence derived from alignment at C-australica_Contig_100:4915..7643- (Chrysoparadoxa australica CS_1217)
ATGAAGACTCCTCTTGGGGATTATAAAGGCGTGGAGGAGTGGACAGCAGT
CGGGAAGAGCAAGGAAGAGTTGCACCAGGCGTACCAGGACTGCATGTTGG
GGCATTACAGACTCTTCGTAGCCGGAGCAGGTGTGGGGCTCATGGTAGGC
ATCACCCGCAAGAACTACTGGCCGCTAGTAACCGGAGGCTTTGTCGGCAG
CATGGGGGACTATTTTGAGGCGCAGGGGGCATGCAAGGACCGGCATGATG
CCTGGATGGCATGCAGGGAGAGGGAAGCGGAAGAAGAGGCTCAGCGCCGG
CAGCAGGACTTGGCCTTTACGTACACCGACGCTGAGCTCGCTGCCAAAGG
GTGGAAGAGACATGGCGAGGGCGAGCTTGGGTACAATGATGAAGAGCTCA
TGAAGGCTTGGGAGAAGAGCCAGCAGGAGCGGGAGGCAAAAGAGAGAGGG
GCTGCCCATGGGAAAGCTTCTTGA back to top
|