mRNA_C-australica_Contig_10.12.3 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10.12.3 vs. uniprot
Match: A0A836CAP1_9STRA (GDT1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAP1_9STRA) HSP 1 Score: 291 bits (746), Expect = 1.350e-93 Identity = 174/332 (52.41%), Postives = 209/332 (62.95%), Query Frame = 1 Query: 22 KRSSALMWGLYILVLLALLVCCHGLDVQKEMLRWDADKSGCIEMGELAIMLRHYMGD------QKEGILP----ASADTAGLP--------FWPAFTSSVGMIIATEIGDKTFFIAAVLAMQHPRLLVFGGAIAALAVMTVLSALLGYALPNVLSRQYTHYASAFLFLYFGAKMIKEGMDAKGSGPSEELAEVEEEXXXXXXXXXXXXXXXKAAHESGYGTNGDKEMESEK----------EKAPLTIFWQGFTLTFLAEWGDRSQIATIALAAAKDLLGVTVGGVLGHSLCTGMAVLGGRMLAARISEKTVHLVGGGLFLLFGLHSLVFGM 933 R +A++ G I+ LLA V L + + D + +G ++ GE A EG A + G+P FW F S VGMIIATEIGDKTFFIAA++AMQ+ R+LVF GAI ALA+MTVLSA LG+ALPN+L R+YTHYA A LFLYFG KM+KEG +A GPSEELAEVE+E + SG G +K +F QG TLTFLAEWGDRSQIATIALAAAKD++GVTVGG+LGHSLCTGMAV+GGR+LAARISE+TVHLVGGGLFL+FGLHSL+FG+ Sbjct: 3 SRHAAVVAGALIVCLLA--VTAAALSTDQAFAQADKNHNGSLDKGEFAAFAERLQAQIASVLGNGEGAAAKLDSAGGGSLGVPTWLAGGPGFWGGFVSGVGMIIATEIGDKTFFIAAIMAMQYSRMLVFAGAITALAIMTVLSAALGFALPNILPREYTHYAGALLFLYFGVKMLKEGFEADDGGPSEELAEVEQELMLKRNADEGDV---EQTPHSGNGXXXXXXXXXXXXXXXXXXXADKKDAWGVFSQGLTLTFLAEWGDRSQIATIALAAAKDVVGVTVGGILGHSLCTGMAVVGGRLLAARISERTVHLVGGGLFLVFGLHSLIFGL 329
BLAST of mRNA_C-australica_Contig_10.12.3 vs. uniprot
Match: D7FN76_ECTSI (GDT1 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN76_ECTSI) HSP 1 Score: 276 bits (707), Expect = 1.800e-88 Identity = 155/251 (61.75%), Postives = 178/251 (70.92%), Query Frame = 1 Query: 187 GDQKEGILPAS-ADTAGLPFWPAFTSSVGMIIATEIGDKTFFIAAVLAMQHPRLLVFGGAIAALAVMTVLSALLGYALPNVLSRQYTHYASAFLFLYFGAKMIKEGMDAKGSGPSEELAEVEEEXXXXXXXXXXXXXXXKAAHESG--YGTNGDKEMESEKEKAPLTIFWQGFTLTFLAEWGDRSQIATIALAAAKDLLGVTVGGVLGHSLCTGMAVLGGRMLAARISEKTVHLVGGGLFLLFGLHSLVFG 930 GD E + A + + FW AF +SV MIIATEIGDKTFFIAA++AM HPRL VFGGA+ ALAVMTVLSA LGYALP +L R YTHYASA LFLYFG +M+KEGM++ G GPSEEL EVEEE E G G G + S + + F++TFLAEWGDRSQIATIALA KD GVT GGV+GHSLCTGMAV+GG++LAARISEKTVHLVGG LFL+FGLH+LVFG Sbjct: 29 GDMNENAVSAGEGEPPQVGFWTAFANSVAMIIATEIGDKTFFIAAIMAMSHPRLAVFGGAVGALAVMTVLSAALGYALPAILPRTYTHYASALLFLYFGFRMLKEGMESHG-GPSEELTEVEEELAKKREGEAKKSGPAAFDMEGGGAIGGAGGGGVRSRRG----AVMTMSFSMTFLAEWGDRSQIATIALATNKDPFGVTAGGVIGHSLCTGMAVIGGKLLAARISEKTVHLVGGALFLVFGLHALVFG 274
BLAST of mRNA_C-australica_Contig_10.12.3 vs. uniprot
Match: A0A7S3UU97_HETAK (GDT1 family protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU97_HETAK) HSP 1 Score: 263 bits (672), Expect = 4.470e-83 Identity = 159/238 (66.81%), Postives = 182/238 (76.47%), Query Frame = 1 Query: 214 ASADTAGLPFWPAFTSSVGMIIATEIGDKTFFIAAVLAMQHPRLLVFGGAIAALAVMTVLSALLGYALPNVLSRQYTHYASAFLFLYFGAKMIKEGMDAKGSGPSEELAEVEEEXXXXXXXXXXXXXXXKAAHESGYGTNGDKEMESEKEKAPLTIFWQGFTLTFLAEWGDRSQIATIALAAAKDLLGVTVGGVLGHSLCTGMAVLGGRMLAARISEKTVHLVGGGLFLLFGLHSLVF 927 A AD A L F PAF SV MI+ATE+GDKTFFIAA+LAM+H R L+FGGAI ALA+MTVLS L+G+ALP+++ R YTHYASA LFLYFG +++K+G +G GPSEELAEVE XXXXXXXXXXXXXXX + G ++ I Q FTLTFLAEWGDRSQIATIALAAAKD GVT GG +GH+LCTG+AV+GGRMLAARISEKTVHL GG LFLLF HSL F Sbjct: 55 AVADAASLKFMPAFVKSVLMIVATELGDKTFFIAAILAMRHSRFLIFGGAIGALALMTVLSTLMGFALPSLIPRTYTHYASALLFLYFGVRLLKDGAGMEGGGPSEELAEVEXXXXXXXXXXXXXXXXXXXXSPTHVG-----------KRTNCQIAAQAFTLTFLAEWGDRSQIATIALAAAKDPYGVTAGGCIGHALCTGLAVVGGRMLAARISEKTVHLTGGALFLLFAAHSLFF 281
BLAST of mRNA_C-australica_Contig_10.12.3 vs. uniprot
Match: A0A7R9YEB3_9STRA (GDT1 family protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEB3_9STRA) HSP 1 Score: 258 bits (658), Expect = 2.180e-80 Identity = 146/256 (57.03%), Postives = 180/256 (70.31%), Query Frame = 1 Query: 199 EGILPASADTAGLPFWPAFTSSVGMIIATEIGDKTFFIAAVLAMQHPRLLVFGGAIAALAVMTVLSALLGYALPNVLSRQYTHYASAFLFLYFGAKMIKEGMDAKGSGPSEELAEVEEEXXXXXXXXXXXXXXXKAAHESGYGTNG---DKEMESEKEKAPLT---------IFWQGFTLTFLAEWGDRSQIATIALAAAKDLLGVTVGGVLGHSLCTGMAVLGGRMLAARISEKTVHLVGGGLFLLFGLHSLVFG 930 E +L + GL F PAF S+ MII TE+GDKTFFIAAVLAM+H R+LVF GA++ALA+MTVLS ++GY LP++L R YTH+ASA LFLYFG +++ E + SGPSEEL EVEEE H+ G +G D E +++ +KA + IF Q FTLTFLAEWGDRSQIATIALA+AKD LGVT GGV+GH LCTG+AV+GGR+LAARISEKTV +VGG LFLLF LH+ ++G Sbjct: 87 EDVLEHIPEVVGLGFVPAFVKSLAMIIVTELGDKTFFIAAVLAMKHSRMLVFAGALSALALMTVLSTMVGYTLPSLLPRAYTHFASAILFLYFGVRLLYESRELS-SGPSEELREVEEELI----------------HKKDQGPDGSLRDPEDDAKLKKAAVQASVLDEQSKIFAQSFTLTFLAEWGDRSQIATIALASAKDPLGVTAGGVIGHGLCTGLAVVGGRILAARISEKTVSIVGGILFLLFALHAFIWG 325
BLAST of mRNA_C-australica_Contig_10.12.3 vs. uniprot
Match: A0A7S2HJF0_9STRA (GDT1 family protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HJF0_9STRA) HSP 1 Score: 258 bits (658), Expect = 3.260e-80 Identity = 139/239 (58.16%), Postives = 170/239 (71.13%), Query Frame = 1 Query: 211 PASADTAGLPFWPAFTSSVGMIIATEIGDKTFFIAAVLAMQHPRLLVFGGAIAALAVMTVLSALLGYALPNVLSRQYTHYASAFLFLYFGAKMIKEGMDAKGSGPSEELAEVEEEXXXXXXXXXXXXXXXKAAHESGYGTNGDKEMESEKEKAPLTIFWQGFTLTFLAEWGDRSQIATIALAAAKDLLGVTVGGVLGHSLCTGMAVLGGRMLAARISEKTVHLVGGGLFLLFGLHSLVF 927 P D FW AF +S MII TEIGDKTFFIAAVLAM+H R +F GA+AALA+MTVLSA +G+ALPN+L R+YTHYASA LFLYFG +++K+ + +G GPS+EL EVEEE K +E+ + + K I Q FTLTFLAEWGDRSQIATIALAAAKD GVT+GG++GHSLCTG+AV+GGR+LAARISEKTV +VGG LFL+F +HS ++ Sbjct: 106 PLVGDLDSKSFWAAFINSWLMIIVTEIGDKTFFIAAVLAMRHSRGAIFTGAVAALALMTVLSAAMGFALPNLLPRKYTHYASALLFLYFGIRLLKDASEMRGGGPSDELQEVEEELISK-----------KDCNETSLENGQESKSGRMKNGDTTRIITQAFTLTFLAEWGDRSQIATIALAAAKDPFGVTLGGIIGHSLCTGIAVVGGRLLAARISEKTVAMVGGTLFLIFAVHSFIY 333
BLAST of mRNA_C-australica_Contig_10.12.3 vs. uniprot
Match: F0Y333_AURAN (GDT1 family protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y333_AURAN) HSP 1 Score: 246 bits (628), Expect = 2.720e-77 Identity = 135/237 (56.96%), Postives = 167/237 (70.46%), Query Frame = 1 Query: 241 FWPAFTSSVGMIIATEIGDKTFFIAAVLAMQHPRLLVFGGAIAALAVMTVLSALLGYALPNVLSRQYTHYASAFLFLYFGAKMIKEGMDAKGSGPSEELAEVEEEXXXXXXXXXXXXXXXKAAHESGYGTNGDKEMESEKEKAP--------LTIFWQGFTLTFLAEWGDRSQIATIALAAAKDLLGVTVGGVLGHSLCTGMAVLGGRMLAARISEKTVHLVGGGLFLLFGLHSLVF 927 F AF +S+GMI ATEIGDKTFFIAA+LAM+H RL++F GA++ALAVMTVLSA +GYALP ++ R YTHYASA LF YFG +M+K+ GSG SEEL EVEEE G +G K++E + +AP + + Q F LTFLAEWGDRSQIATIALA+AKD GVT GG++GHS+CTG+AV+GGRMLA+RISEK VH+VGG +FL+F +S F Sbjct: 1 FAAAFVNSMGMIWATEIGDKTFFIAAILAMKHARLVIFLGAVSALAVMTVLSAAMGYALPALMPRTYTHYASALLFFYFGCRMLKDASSMSGSGVSEELGEVEEEL--------------------GGAGHGKKDVEDDGAEAPPPAEETDAVKVLGQAFMLTFLAEWGDRSQIATIALASAKDPYGVTAGGIVGHSMCTGLAVVGGRMLASRISEKHVHVVGGLIFLVFAAYSFFF 217
BLAST of mRNA_C-australica_Contig_10.12.3 vs. uniprot
Match: A0A4D9CVK3_9STRA (GDT1 family protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVK3_9STRA) HSP 1 Score: 251 bits (641), Expect = 3.150e-77 Identity = 148/283 (52.30%), Postives = 174/283 (61.48%), Query Frame = 1 Query: 190 DQKEGILPASADTAGLPFWPAFTSSVGMIIATEIGDKTFFIAAVLAMQHPRLLVFGGAIAALAVMTVLSALLGYALPNVLSRQYTHYASAFLFLYFGAKMIKEGMDAKGSGPSEELAEVEEEXXXXXXXXXXXXXXXKAAHESG----------------------------------YGTNGDKEMESEKEK--APLTIFWQGFTLTFLAEWGDRSQIATIALAAAKDLLGVTVGGVLGHSLCTGMAVLGGRMLAARISEKTVHLVGGGLFLLFGLHSLVFG 930 +++EG ++ FWPAF +S+ MI+ TE+GDKTFFIAAVLAM++ RLL+FGGAI+AL +MT+LSA +G LPNVL R YTHYASA LFLYFG K+I E +GSGPS+EL EVEEE E+G +G G K K A +F Q TLTFLAEWGDRSQIATIALAAAKD GVT GG+LGHSLCTG+AVLGGRMLAARISEKTV GG LFL+F HSL+ G Sbjct: 88 NKEEGDRGVEEESLSRGFWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAISALIIMTILSAAIGNVLPNVLPRIYTHYASALLFLYFGIKLIVEARGMEGSGPSDELQEVEEELIHKKEGRASPHTLEMTQLENGNGESHAQGSGGFEXXXXXXXXXXXXKGASPAGGAHGRMGSYAQGEGKAKGNAATKVFTQALTLTFLAEWGDRSQIATIALAAAKDPYGVTAGGILGHSLCTGLAVLGGRMLAARISEKTVASTGGVLFLVFCAHSLIVG 370
BLAST of mRNA_C-australica_Contig_10.12.3 vs. uniprot
Match: A0A7S1CD49_9STRA (GDT1 family protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD49_9STRA) HSP 1 Score: 244 bits (623), Expect = 7.070e-75 Identity = 142/283 (50.18%), Postives = 178/283 (62.90%), Query Frame = 1 Query: 124 DADKSGCIEMGELAIMLRHYMGDQKEGILPASADTA-------GLPFWPAFTSSVGMIIATEIGDKTFFIAAVLAMQHPRLLVFGGAIAALAVMTVLSALLGYALPNVLSRQYTHYASAFLFLYFGAKMIKEGMDAKGSGPSEELAEVEEEXXXXXXXXXXXXXXXKAAHESGYGTNGDKEMESEK-----EKAPLTIFWQGFTLTFLAEWGDRSQIATIALAAAKDLLGVTVGGVLGHSLCTGMAVLGGRMLAARISEKTVHLVGGGLFLLFGLHSLVFGMD 936 DA+ GC++ E A R + G+L D+ L FW +F +SV MII TE+GDKTFFIAA+LAMQ+ R VFGGAI ALA+MT LSA +G+ALP +L + YTHYA+ LF YFGAK++KE + K P+EEL E E E D+++E+ K +K +F Q FTLTFLAEWGDRSQIATIALA AKD +GVT+GG +GHSLCTG+AVLGG+ML++RISE+TV + GG LF LF LH L G D Sbjct: 89 DANGDGCVDASEFADFERDH------GLLENPVDSTVRELKKPALEFWASFGNSVIMIIVTELGDKTFFIAAILAMQYDRAPVFGGAIGALALMTALSAAIGWALPAILPKTYTHYAAVALFAYFGAKLLKEAREMKDGEPNEELEEAERELGVK-----------------------DEDVENGKIRSAIKKTAWAVFTQTFTLTFLAEWGDRSQIATIALATAKDPMGVTLGGTIGHSLCTGLAVLGGKMLSSRISERTVLIAGGVLFCLFALHGLWAGSD 342
BLAST of mRNA_C-australica_Contig_10.12.3 vs. uniprot
Match: A0A7S2RJT4_9STRA (GDT1 family protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJT4_9STRA) HSP 1 Score: 239 bits (610), Expect = 5.110e-73 Identity = 129/228 (56.58%), Postives = 160/228 (70.18%), Query Frame = 1 Query: 241 FWPAFTSSVGMIIATEIGDKTFFIAAVLAMQHPRLLVFGGAIAALAVMTVLSALLGYALPNVLSRQYTHYASAFLFLYFGAKMIKEGMDAKGSGPSEELAEVEEEXXXXXXXXXXXXXXXKAAHESGYGTNGDKEMESEKEKAPLTIFWQGFTLTFLAEWGDRSQIATIALAAAKDLLGVTVGGVLGHSLCTGMAVLGGRMLAARISEKTVHLVGGGLFLLFGLHSLV 924 FW AF +S MII TE+GDKTFFIAAVLAM+ R V+ GA+ ALA MTVLSA++G+ LPN+L RQYTHYASA LF+YFG K++KE + +G GPS+EL EVE+E A + +A Q FTLTFLAEWGDRSQIATIA+AAAKD GVT+GG++GH++CTG+AV+GGRMLA+RISEKTV +VGG LFL F +HS++ Sbjct: 113 FWAAFLNSFLMIIVTELGDKTFFIAAVLAMRQDRWAVYLGAVGALAAMTVLSAIMGFMLPNLLPRQYTHYASAALFVYFGFKLLKEASEMEGDGPSDELQEVEDELIHKKEEGDVLENGDAVA------PGASPPSRAFANQAVTRTLTQSFTLTFLAEWGDRSQIATIAMAAAKDPFGVTIGGIIGHAICTGIAVIGGRMLASRISEKTVAIVGGVLFLGFAVHSIL 334
BLAST of mRNA_C-australica_Contig_10.12.3 vs. uniprot
Match: A0A7S3JXQ5_9STRA (GDT1 family protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JXQ5_9STRA) HSP 1 Score: 239 bits (609), Expect = 2.470e-72 Identity = 130/231 (56.28%), Postives = 165/231 (71.43%), Query Frame = 1 Query: 241 FWPAFTSSVGMIIATEIGDKTFFIAAVLAMQHPRLLVFGGAIAALAVMTVLSALLGYALPNVLSRQYTHYASAFLFLYFGAKMIKEGMDAKGSGPSEELAEVEEEXXXXXXXXXXXXXXXKAAHESGYGTNGDKEMESEKE--KAPLTIFWQGFTLTFLAEWGDRSQIATIALAAAKDLLGVTVGGVLGHSLCTGMAVLGGRMLAARISEKTVHLVGGGLFLLFGLHSLVF 927 F AF +S+GMI ATE+GDKTFFIAA+LAM+H R +VF GA+ ALA+MTVLSA LGYALP++L R YTHYASAFLF YFG +++++ GPS+EL EVE+E + H+ N + +K+ + +F Q LTFLAEWGDRSQIATIALAAAKD +GVTVGG+LGH++CTG+AVLGGRMLA+RISE+TV L GG LFL+F +++ F Sbjct: 123 FSKAFVNSLGMIWATELGDKTFFIAAILAMRHSRCIVFSGALLALALMTVLSAALGYALPSILPRTYTHYASAFLFFYFGIRLLRDARSMH-EGPSDELVEVEDELGGAV-----------SGHKKDTTPNNNHASHKKKKIFRTAFHVFSQSLALTFLAEWGDRSQIATIALAAAKDPIGVTVGGILGHAMCTGLAVLGGRMLASRISERTVALTGGILFLVFATYAMFF 341 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10.12.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10.12.3 >prot_C-australica_Contig_10.12.3 ID=prot_C-australica_Contig_10.12.3|Name=mRNA_C-australica_Contig_10.12.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=300bp MWGLYILVLLALLVCCHGLDVQKEMLRWDADKSGCIEMGELAIMLRHYMGback to top mRNA from alignment at C-australica_Contig_10:32874..34976- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10.12.3 ID=mRNA_C-australica_Contig_10.12.3|Name=mRNA_C-australica_Contig_10.12.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2103bp|location=Sequence derived from alignment at C-australica_Contig_10:32874..34976- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10:32874..34976- >mRNA_C-australica_Contig_10.12.3 ID=mRNA_C-australica_Contig_10.12.3|Name=mRNA_C-australica_Contig_10.12.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=900bp|location=Sequence derived from alignment at C-australica_Contig_10:32874..34976- (Chrysoparadoxa australica CS_1217)back to top |