mRNA_C-tenellus_contig10055.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10055.1.2
Unique NamemRNA_C-tenellus_contig10055.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 6.700e-94
Identity = 164/232 (70.69%), Postives = 194/232 (83.62%), Query Frame = 2
Query:  329 VPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNK-TVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEEDGIEGE 1021
            VPGLGFVADTL  FL+WVEDNPG G +AFA VYV TTVCFIPGSLLTLGAGL FGRALG  LG+L+GS AVL GAT+G++LAFLLGR+VLQ+QAQGLFN FK+L+AVN+AI++QGLKLV+LLRLSPVVPFSAFN+VMG+T V FRDYA+GC GFIPGTVA+VFIGT+AS LLG +  +          TVQ IV +VG IAT+IA+VLIS+YAK+AL++ L   EED +E E
Sbjct:   64 VPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVL---EEDRVEQE 292          
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA)

HSP 1 Score: 265 bits (677), Expect = 1.380e-80
Identity = 154/245 (62.86%), Postives = 184/245 (75.10%), Query Frame = 2
Query:  326 QVPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDD------MDKDG-----GNKTVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVE-EDGIEGED 1024
             VP LG V   L +FL WVEDNP EG  AFA VY+  TV FIPGSLLTLGAGL FGRALGI  GV LGS AV+LGA+IGA++AF+LGRYVLQ  AQ LFN FKI++AV+KAIE+QGLKL LLLRLSPVVPF+AFN++MGLT +S +DY +GC G IPGTVAYVFIG+SAS +   + ND+       D DG      N TV  IVI+VG IAT+IA+ LIS YAK+AL+  L +VE E+  +G+D
Sbjct:   45 SVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGIGDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNEVELEENQDGKD 289          
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK)

HSP 1 Score: 223 bits (568), Expect = 1.440e-64
Identity = 127/232 (54.74%), Postives = 157/232 (67.67%), Query Frame = 2
Query:  329 VPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGN------------KTVQQIVIVVGVIATIIAIVLISVYAKQALSEAL 988
            +P LG V   L  FL WVE++PGEG VAFA+VYVLTTV FIPGS+LTLGAGL FGRAL                      +AFLLGRYVLQ  AQ LFN F +L+AV+KAIE +GL+LV+LLRLSPV+PFSAFN+VMGLT+V FR Y LGC G +PGTVAYVFIGTSA+ LLG  D+   + +               + V  +V+VVG  AT++A+VLI+V +++AL   L
Sbjct:   70 LPSLGHVNRILTSFLLWVEEHPGEGVVAFASVYVLTTVLFIPGSILTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXXIAFLLGRYVLQDSAQKLFNKFSVLKAVDKAIENEGLRLVILLRLSPVIPFSAFNYVMGLTRVMFRQYVLGCVGMLPGTVAYVFIGTSAAGLLGDADDGSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVL 301          
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 5.670e-57
Identity = 109/223 (48.88%), Postives = 156/223 (69.96%), Query Frame = 2
Query:  347 VADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKT---VQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEED 1006
            V   L+   +W+EDNP  G V FA ++ L+T+ F+PG LLT+GAG+AFGRALG   GVL GS AVLLGA +  ++AF LGRYVL +QAQ     ++IL AVN AIE  G+K+++LLRLSP+VPFS FN + GLTKVS RDY LG  G +PGT+A+V+IG S +  +   + + M+    ++T   ++   ++VG +A ++AIV +++YA++AL +AL + E D
Sbjct:   89 VRTWLETSFEWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTM--NEQEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRALKQALVESELD 309          
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A7S4JVV3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVV3_9STRA)

HSP 1 Score: 195 bits (496), Expect = 2.180e-54
Identity = 103/221 (46.61%), Postives = 152/221 (68.78%), Query Frame = 2
Query:  341 GFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEE 1003
            G++ D ++ FL W+E+NP EGF  F  VYVL TV F+PG +LTLGAG  F  A G  LG+ +G+ +V +GA++G++LAFL+ RY+L++ A GL   F I +A+++A+E +GLK+++LLRLSPV+PF+A N+V G+T VSF+DY+L  F  +PGT+ YVF+G SA  L     + D      +K +    +VVGV+  I+A+ L S YAK+ L++ L   EE
Sbjct:   40 GYIKDGIQTFLRWIEENPIEGFFMFMGVYVLATVLFVPGLILTLGAGYVFSNAFGTGLGLFVGTISVFVGASLGSMLAFLISRYILREWAVGLTEKFPIFRAIDQALEEKGLKIIILLRLSPVIPFNALNYVCGVTAVSFKDYSLALFAMLPGTILYVFLGASAQSLATIGSSTD------SKALTISTVVVGVVLGIVAVALSSRYAKKELNKILDQEEE 254          
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A7S2JYW7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JYW7_9STRA)

HSP 1 Score: 188 bits (478), Expect = 8.640e-52
Identity = 102/230 (44.35%), Postives = 148/230 (64.35%), Query Frame = 2
Query:  335 GLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEEDGIEGED 1024
            G G V  T+++FLDWVEDNP EG  AF  VY + TV FIPG++LTLGAG  F  A G+ +GVLL S AV +GA+ GAL +FLLGRY+L+     L + +++  A++ A+   G K++ LLRLSP++PF+A N++ G+T VSFRD AL     +PGTV YVF+G+SA  L       D +  G ++T   I +V G++  ++ I   S YAK+ L+  +   + + ++ ED
Sbjct:   42 GDGRVTSTVEDFLDWVEDNPAEGVFAFIGVYFVATVLFIPGTILTLGAGFVFSSAFGLGVGVLLASIAVFVGASSGALASFLLGRYLLRDWVMTLTSKYQLFGAIDTALTNNGFKIMSLLRLSPIIPFNALNYIAGVTSVSFRDNALALLFILPGTVMYVFLGSSAGSL------SDSESSGDDQTTTIITVVFGIVFGLLGIAATSYYAKKELNAVIAQQDGERVDAED 265          
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV)

HSP 1 Score: 189 bits (481), Expect = 1.130e-51
Identity = 101/230 (43.91%), Postives = 149/230 (64.78%), Query Frame = 2
Query:  341 GFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEEDGIEGEDKV 1030
            GFV   ++  L W+E+NP  G   F AVY + TV F+PGSLLTLG+G  F  + G+  GVLL + AV +GAT+GAL+AF+LGRY+L+   + L   + + +A++KA+E +GL++++LLRLSP++PF+A N++ G+T VSF+ YA   F  +PGT+ +VF+G SA  L+      D    G    V    IVVGV+  +IAI L S YAK+ L++ L+  + D  E  D +
Sbjct:   68 GFVKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGASAGSLV------DSGNGGDTPVVTIATIVVGVVFGVIAIALTSRYAKKELNKILEQEKTDETERTDNI 291          
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A7S2PDT1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PDT1_9STRA)

HSP 1 Score: 186 bits (473), Expect = 5.430e-51
Identity = 102/214 (47.66%), Postives = 138/214 (64.49%), Query Frame = 2
Query:  335 GLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQAL 976
            G G V DT+ +FL WVEDNP EG  AF  VY + TV FIPG++LTLGAG  F  A G+  GVLL SAAV +GA+ GA+ +FLLGRY+LQ     L   + + +A++ A+   G K++ LLRLSP++PF+A N++ G+T +SFRD  L  F  +PGT+ YVF+G+SA  L       D +  G ++T   I +V GVI   +AI   S YAK+ L
Sbjct:   45 GEGRVTDTVDDFLQWVEDNPTEGVFAFIGVYFVATVLFIPGTILTLGAGFVFSSAFGLGPGVLLASAAVFVGASTGAIASFLLGRYLLQDWVTTLTQKYTVFEAIDGALTHNGFKIMSLLRLSPIIPFNALNYIAGVTSISFRDNTLALFFILPGTILYVFLGSSAGSL------SDSESSGSDQTTTIITVVFGVIFGFLAIAATSYYAKKEL 252          
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: D7G9F3_ECTSI (Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F3_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 8.630e-51
Identity = 95/169 (56.21%), Postives = 122/169 (72.19%), Query Frame = 2
Query:  347 VADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGE 853
            V   L+   DW+EDNP  G V FA ++ L+T+ F+PG LLT+GAG+AFGRALG   GVL GS AVLLGA +  ++AF LGRYVL +QAQ     ++IL AVN AIE  G+K+++LLRLSP+VPFS FN + GLTKVS RDY LG  G +PGT+A+V+IG S +  +  E
Sbjct:   89 VRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEE 257          
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A0G4EY60_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EY60_VITBC)

HSP 1 Score: 184 bits (467), Expect = 1.580e-49
Identity = 108/229 (47.16%), Postives = 150/229 (65.50%), Query Frame = 2
Query:  347 VADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQAL-----SEALKDVEEDGIEG 1018
            VA+ L  F +WV+DNP  G +A+ AVY++ TV FIPGS+LTLGAG  F  A G   G+  G  AVL+GA +GA LAF  GR++ +   QGL + FK+++A++K  ETQGLKL +LLRLSPVVPFSAFN++MG T+  +RDYA+G  G IPGT  YV+IG  A     G  +   +  G     Q + + VG++AT IA+ +++ +A++AL      EA +  + DG EG
Sbjct:   79 VAEGLDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFETQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIG--AIPAFAGACSGKAE--GSGHWSQWVFLAVGLVATFIAVFIVTWFARKALREITEKEAAEASKADGKEG 303          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIK1_ECTSI6.700e-9470.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y1P9_9STRA1.380e-8062.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YEX9_HETAK1.440e-6454.74Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5JID7_9PHAE5.670e-5748.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4JVV3_9STRA2.180e-5446.61Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2JYW7_9STRA8.640e-5244.35Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2A6Q3_TRICV1.130e-5143.91Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2PDT1_9STRA5.430e-5147.66Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
D7G9F3_ECTSI8.630e-5156.21Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectoc... [more]
A0A0G4EY60_VITBC1.580e-4947.16Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10055contigC-tenellus_contig10055:969..4138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIK1
PFAMsSNARE_assoc
Model size1773
Max annot lvl2759|Eukaryota
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Hectar predicted targeting categoryother localisation
Exons6
Evalue8.64e-21
EggNOG OGsCOG0398@1|root,KOG3140@2759|Eukaryota
Ec32 ortholog descriptionMajor facilitator superfamily domain
Ec32 orthologEc-27_000060.1
EC1.14.13.9
Descriptioncanonical Wnt signaling pathway involved in osteoblast differentiation
Cds size441
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10055.1.2prot_C-tenellus_contig10055.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10055 1975..3512 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789112.862962-UTR-C-tenellus_contig10055:968..15121680789112.862962-UTR-C-tenellus_contig10055:968..1512Choristocarpus tenellus KU2346UTRC-tenellus_contig10055 969..1512 +
1680789112.8779354-UTR-C-tenellus_contig10055:1782..19741680789112.8779354-UTR-C-tenellus_contig10055:1782..1974Choristocarpus tenellus KU2346UTRC-tenellus_contig10055 1783..1974 +
1680789112.9402013-UTR-C-tenellus_contig10055:3512..35221680789112.9402013-UTR-C-tenellus_contig10055:3512..3522Choristocarpus tenellus KU2346UTRC-tenellus_contig10055 3513..3522 +
1680789112.9571722-UTR-C-tenellus_contig10055:3552..41381680789112.9571722-UTR-C-tenellus_contig10055:3552..4138Choristocarpus tenellus KU2346UTRC-tenellus_contig10055 3553..4138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789112.8913386-CDS-C-tenellus_contig10055:1974..19761680789112.8913386-CDS-C-tenellus_contig10055:1974..1976Choristocarpus tenellus KU2346CDSC-tenellus_contig10055 1975..1976 +
1680789112.9022262-CDS-C-tenellus_contig10055:2200..22901680789112.9022262-CDS-C-tenellus_contig10055:2200..2290Choristocarpus tenellus KU2346CDSC-tenellus_contig10055 2201..2290 +
1680789112.9135258-CDS-C-tenellus_contig10055:2909..29951680789112.9135258-CDS-C-tenellus_contig10055:2909..2995Choristocarpus tenellus KU2346CDSC-tenellus_contig10055 2910..2995 +
1680789112.928421-CDS-C-tenellus_contig10055:3249..35121680789112.928421-CDS-C-tenellus_contig10055:3249..3512Choristocarpus tenellus KU2346CDSC-tenellus_contig10055 3250..3512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10055.1.2

>prot_C-tenellus_contig10055.1.2 ID=prot_C-tenellus_contig10055.1.2|Name=mRNA_C-tenellus_contig10055.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=147bp
MGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGN
KTVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEEDGIEGEDKVLR
LVTTEVKSTSPMEVDDPVCSQVVRNGIEILLFVLENSRYYVIFQVL*
back to top

mRNA from alignment at C-tenellus_contig10055:969..4138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10055.1.2 ID=mRNA_C-tenellus_contig10055.1.2|Name=mRNA_C-tenellus_contig10055.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3170bp|location=Sequence derived from alignment at C-tenellus_contig10055:969..4138+ (Choristocarpus tenellus KU2346)
CCGTAATATCACGAACAAACATTTCAGCTCACTCCCCATCACCTAGTTGA CATCAACATGAACCTCAAGGCCCAAGATCTACCCAAGTCAAACCAAGCGA TTGCTGTAGATGAAGGCGTGGAGTCGCATGCGTTTACCAAGAATGATAAT CTCTTAAAGACTGGGCTGCTTGTGGTCTTGGTTGGGCTCCTCGTTTATGT CATACTTGACTACACGGTAGGTCAAGAAGTTGCTCGCATGTCTCGCCTGT TGTAGTTGTGAATATCCAATCACCCACAATACCATACCTTAGTACCTTCG TGGTTTCTCTCATCCTACTCTGTAACAGGTTCCTGGCCTTGGGTTCGTGG CTGACACACTCAAGGAATTCCTGGACTGGGTAGAGGACAATCCAGGGGAA GGGTTCGTCGCCTTTGCAGCAGTCTACGTCCTAACAACCGTGTGTTTCAT ACCAGGATCATTGCTGACCCTGGGTGCAGGCCTTGCGTTTGGCCGGGCCT TAGGTATCTGACTTGGTGTTCTGCTAGGGTCAGCAGCGGTGCTGGTGAGA CCTGGACACACTCGCTGGGATGTTGCCGTTGTGAATGTCTGAAGAATTGC TTGTGCCCTCTCTGTAGTTGTAATTATTTTCGATCTCGCCTTCAATATTC ACGACCATTACTTTAATTGGCGTGGCTACCGAACCTGTTTCGGGAAAGGG TTGCGTTGTGGTGATAACGAACACGAGAAACCCTCCGGATTGGCTGGCAC GCAGGACAAGCATTCACGGAACACGTTGTATTCATGTGCCCGTTTCTTGT CGCTACTTTTGCAGCTAGGTGCCACCATAGGTGCTCTCCTAGCTTTCCTG CTTGGGCGGTACGTCTTGCAGCAACAGGCTCAAGGCCTATTCAACACATT CAAAATCCTTCAAGCTGTGAACAAGGCGATTGAAACCCAGGGCCTGAAGC TAGTGCTCCTCCTCAGGCTCTCCCCAGTTGTCCCCTTTTCTGCCTTCAAC CATGTCATGTGAGCAGACCCTCATCTACTATTGTAGAGGGAAGAGTAGAT CTGTTTTAACCGGTGTAAATTATGCCCCTTTTCTAATCATTACCGTACTT CGCCTGCTGTGATGCCTGACTTGACAGATGCGTAGTATACGATAAGTTGG CAATTTATTTATGAGAACCTCACACCAGTGATTCCCCCTCTCACACATAC TCTCTCCTCCATGCTGGCTGTCTCCAAACCAGGGGACTGACCAAGGTATC TTTCCGAGACTATGCTCTGGGTTGCTTTGGGTTCATCCCAGGGACTGTTG CCTACGTTTTCATCGGCACAAGGTTAGACCCTCTATTGCTCACTAGTGCC AACCTTGAGGTAACATGCCCACGTCTTCTATTTCAGTACTTAGATTTGTC TCCCCTCCACATGGAGACATTTCAGTGTGGCACGCTGGGTTGAGATATCA TGTGCACTCAGCATGGTCTCCACTAAGCATTGCTTGTTGGTGAGGCTGTC AATTTCTGGAGATTGCATGCCACAGTTCTAGTTGCATGTTAGTGAGACCT ATGAAGTATCTGGTGTTTGAAAGAGGTGGAGCGACTTGTTGGCACAACAT CATAACAGGATAATAGTGGACATCATAATCAGGAACGTCTTTGAACATGC TAGGTTCCTACTGTACATCAAGCACCAATTTCAACATGACTGGTAAGATC TAGTTTCCCACGTGGTTTGCTTGTTTGTAGACTAAACCCCAACATGAGAT AGGGTTTGTCTTTAGGGGCAGGAGAAGCCGAGGAACAGATTATGTAGGCT GTATCCTTACACTGTTGTGGAGTTAGGTAGCGCTCATCACACACCTTGCA GGATGGCGAGTTCCTTGACCATTGGCTTATTTCTGTTTCCTCTTGCAAAC TGTGTCTACTCTCACCCCCTGATCTGTTCTACTCTGGACAGTGCCTCACA TCTCTTGGGAGGTGAAGACAATGATGACATGGACAAAGATGGTGGGAATA AAACTGTGCAACAGATTGTCATTGTTGGTAAGTGCAGTGTGGTTGTGCAC AAGGGAAGTGGTGTTATGGAAAAATAGTGTGAAGTGCAAATCTGTACTTT GGTCAGTGACCTTAAAGAAACGCGCTGTCGATGTTGTAGTTACTACAGCC TGTATGATCAGAATTTTTCCATTTCTATCTATTCCATCCCAAACCACAAC CTAACCTGTCCCTCTCTAAAAGTTTTCCTTTTCTCCTTGTCTGTCCCCTG ACCTCCCCACCTCCCTTGCCTGACTTTGCAGTGGGGGTGATTGCCACCAT CATTGCAATAGTGCTTATCAGTGTTTATGCCAAGCAAGCATTGAGCGAGG CTCTGAAGGATGTGGAAGAAGATGGCATTGAGGGAGAGGACAAGGTACTC AGACTAGTTACTACGGAGGTCAAAAGCACATCACCTATGGAAGTTGATGA TCCAGTTTGTAGCCAAGTTGTACGAAATGGAATAGAAATTTTGTTGTTTG TGTTAGAAAATTCTAGGTACTATGTGATTTTTCAGGTTTTGTGAATATAA TTGAAGACCCTACGATCTAGGTCTTAGTAACTTTGAGTTTGTGTTGCATT GAGAATAGAATAGCAATGGTCTAGACATGTTACCTCCCTCCCCATTGCTA TATTCTTTCTTGAGGTGGATGTAAGCAAATCTTCCTCATGGAAGTGAGTT TCTCCTCTGTGTGTACTCCTTCAGCTATTGTTAGTTCAGTTGTTGGTACT TCTAGTGTAGGAGTGCTGAAGAAAATGAGAGATTATCCCACTTCAGAACT CTGTGGCAAAGATGTGGCACATACATTCAGGCAATTGGATCAAACTTGCT TCCTTGCACTTAGGCCAATGCTATTGACTACATTGGATCAGATGTGTTTG GAATATGTTTAATAAATTTTTCTGTAGTTTTAAAAGCCATGTGTGTGTGG GTTTGATATTTTTGCCAAGAATATTCCAGGTTGACGAATCCTCTCAGTAT GATGGGCAATCTTTTCTTTTCTTCAGTGTGACGAGTTTCTTGAACCCCTC ATACTATCAAAGATACTCAGCCTGTTGTAGTAGACTTTTTACGGAGGCGT TCCTCTGATGGTATCAGGTACCACTATAGTGCATCTTCTCAGTGCATACA CTATAGTGGATAAACCTCCA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10055:969..4138+

>mRNA_C-tenellus_contig10055.1.2 ID=mRNA_C-tenellus_contig10055.1.2|Name=mRNA_C-tenellus_contig10055.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=441bp|location=Sequence derived from alignment at C-tenellus_contig10055:969..4138+ (Choristocarpus tenellus KU2346)
ATGGGACTGACCAAGGTATCTTTCCGAGACTATGCTCTGGGTTGCTTTGG
GTTCATCCCAGGGACTGTTGCCTACGTTTTCATCGGCACAAGTGCCTCAC
ATCTCTTGGGAGGTGAAGACAATGATGACATGGACAAAGATGGTGGGAAT
AAAACTGTGCAACAGATTGTCATTGTTGTGGGGGTGATTGCCACCATCAT
TGCAATAGTGCTTATCAGTGTTTATGCCAAGCAAGCATTGAGCGAGGCTC
TGAAGGATGTGGAAGAAGATGGCATTGAGGGAGAGGACAAGGTACTCAGA
CTAGTTACTACGGAGGTCAAAAGCACATCACCTATGGAAGTTGATGATCC
AGTTTGTAGCCAAGTTGTACGAAATGGAATAGAAATTTTGTTGTTTGTGT
TAGAAAATTCTAGGTACTATGTGATTTTTCAGGTTTTGTGA
back to top