mRNA_C-tenellus_contig10764.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10764.2.1
Unique NamemRNA_C-tenellus_contig10764.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10764.2.1 vs. uniprot
Match: A0A6H5KQH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH9_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 5.120e-93
Identity = 195/391 (49.87%), Postives = 241/391 (61.64%), Query Frame = 1 
Query:    1 EAILSKHSLLGGE--GSAGAC----LLSGQAMVRLYLVRMLLEVVTLP-GVGPRGAMAA-EGVYVAGIGSPCHR---RPVDTVAVAG---GSLGXXXXXXXXXXGAELHVCVGGCPPVLDI-RADGIEGVPSPMYVGREKVFWNVCTKALRPDWFISLLETCGEEAGLAWTFRLLAALFQASEDFVDAFEKADGFRTVATSLPRFSTSLPVLLPALALALGVPIRELPPTAEGMGPKDILSMFRRNAGIARGPSGGSGSGGGQS---GEDIPPHPFVRLCVAEVLIPSLRSNGIVIADA-AAGEGPGAGAG---------------LRTRGTEVVCDVLEVERARRVNEVVLGALWEAQNFDPSFARACRSPDVVEALVDALGASWDEQQE 1071
            EA+L +  LLG E  G  G+     +LSGQA+VRLYLVRMLLE+VTLP     +G +++ EGVYV G+GSPC R   R  +  A A    G+            G  L   V G PPV+D+  ADG  G+PSP+Y GR + F  VC++ALR DWFISLLETC EEAG+AWTFRLLAA+ Q+SE+F  +F  ADGFR +A  LPR++ SLPVLLPALALALGVP+  LP TAEGM    ILS+ RRNAG A GP  G  +GGG +   G D  P PFVR+C+A V++P LR N  ++  A AAG  P   A                          DV +  RA+RVNE++  A+WEA   DPSF   CRSP +V ALVD LG +WDE +E
Sbjct: 2682 EAVLRRIGLLGDEEDGGGGSSPADKVLSGQALVRLYLVRMLLEIVTLPVAAASKGELSSTEGVYVGGVGSPCAREAQRAAEEAAAASAVSGAKTPKEGGEKGGSGTRLERWVDGVPPVVDVVEADG-SGLPSPLYAGRHRQFKTVCSRALRADWFISLLETCQEEAGVAWTFRLLAAMLQSSEEFGSSFRDADGFRAMAVCLPRYAASLPVLLPALALALGVPVAALPATAEGMDAISILSLLRRNAGTAHGP--GRCAGGGMAPRGGGDTEPRPFVRVCLARVILPCLRVNAALLRRAEAAGVVPTTAAAPPSXXXXXXXXXXXXXXXXXXXXXADVSDWRRAKRVNELMSAAMWEALMNDPSFRLTCRSPGIVAALVDVLGGTWDEPEE 3069
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BLAST of mRNA_C-tenellus_contig10764.2.1 vs. uniprot
Match: D8LI42_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI42_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 5.060e-91
Identity = 194/406 (47.78%), Postives = 239/406 (58.87%), Query Frame = 1 
Query:    1 EAILSKHSLLGGE----------GSAGACLLSGQAMVRLYLVRMLLEVVTLP-GVGPRGAMAA-EGVYVAGIGSPCHRRPVDTVAV-----------AGGSLGXXXXXXXXXXGAELHVCVGGCPPVLDI-RADGIEGVPSPMYVGREKVFWNVCTKALRPDWFISLLETCGEEAGLAWTFRLLAALFQASEDFVDAFEKADGFRTVATSLPRFSTSLPVLLPALALALGVPIRELPPTAEGMGPKDILSMFRRNAGIARGPSGGSGSGGGQS---GEDIPPHPFVRLCVAEVLIPSLRSN----------GIVIADAAAGEGP---------GAGAGLRTRGT----EVVCDVLEVERARRVNEVVLGALWEAQNFDPSFARACRSPDVVEALVDALGASWDEQQ 1068
            EA+L +  LLG E           S    +LSGQA+VRLYLVRMLLE+VTLP     +G +++ EGVYV G+GSPC R                     G+            G  L   V G PPV+D+  ADG  G+PSP+Y GR + F  VC++ALR DWFISLLETC EEAG+AWTFRLLAA+ Q+SE+F  +F +ADGFR +A  LPR++ SLPVLLPALALALGVP+  LP TAEGM    ILS+ RRNAG A GP  G  +GGG +   G D  P PFVR+C+A V++P LR N          G+V   AAA E           G GA   + G         DV +  RA+RVNE++  A+WEA   DPSF   CRSP +V ALVD LG +WDE +
Sbjct: 2384 EAVLRRVGLLGEEXXXXXXXXXXSSPADKVLSGQALVRLYLVRMLLEIVTLPVAAASKGELSSTEGVYVGGVGSPCAREAQRAAXXXXXXXXXXXXXVSGAKAPKEGARKGGGGTRLERWVDGVPPVVDVVEADG-SGLPSPLYAGRHRQFKTVCSRALRADWFISLLETCQEEAGVAWTFRLLAAMLQSSEEFGSSFREADGFRAMAVCLPRYAASLPVLLPALALALGVPVAALPATAEGMDVISILSLLRRNAGTAHGP--GRCAGGGMAPRGGGDTEPRPFVRVCLARVILPCLRVNAALLRRAEAAGVVPTTAAAAESSPSQAPPSPSGDGAEKTSPGVAATASATADVSDWRRAKRVNELMSAAMWEALMNDPSFRLTCRSPGIVAALVDVLGGTWDEPE 2786
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BLAST of mRNA_C-tenellus_contig10764.2.1 vs. uniprot
Match: W7TSW7_9STRA (Wd repeat and fyve domain-containing protein 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSW7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 8.620e-9
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:  394 TKALRPDWFISLLETCGEEAGLAWTFRLLAALFQASEDFVDAFEKAD-GFRTVATSLPRFSTSLPVLLPALALALGVPIRELP 639
            ++ + PDWF ++L +C +   ++ T R L  LFQ  +DFV AF + D GF T+ + LP  S S  VL+P LA+ LGVP+ +LP
Sbjct: 2013 SRCMSPDWFHAVLASCRDALSISLTLRALFILFQERDDFVVAFSEYDTGFVTLGSFLPSISASPVVLMPLLAVILGVPMVQLP 2095
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BLAST of mRNA_C-tenellus_contig10764.2.1 vs. uniprot
Match: A0A7S3YM81_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YM81_HETAK)

HSP 1 Score: 61.6 bits (148), Expect = 1.920e-7
Identity = 33/80 (41.25%), Postives = 43/80 (53.75%), Query Frame = 1 
Query:  385 NVCTKALRPDWFISLLETCGEEAGLAWTFRLLAALFQASEDFVDAFEKADGFRTVATSLPRFSTSLPVLLPALALALGVP 624
            N+  + L P+WF+ +LE   EEA  A   RLLA + Q +  F +AF  A GF   A ++PR S   P LL  LA   G P
Sbjct:  122 NIFLEHLTPNWFMCMLEGVQEEASAAVLLRLLAVMLQGTPGFDEAFFAAGGFSLCAMAVPRHSACAPALLTLLAALFGAP 201
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10764.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KQH9_9PHAE5.120e-9349.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI42_ECTSI5.060e-9147.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
W7TSW7_9STRA8.620e-943.37Wd repeat and fyve domain-containing protein 3 n=2... [more]
A0A7S3YM81_HETAK1.920e-741.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10764contigC-tenellus_contig10764:2686..4193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LI42
Model size1163
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.3e-92
EggNOG OGs2E8XM@1|root,2SFC4@2759|Eukaryota
Cds size1161
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789148.0455215-CDS-C-tenellus_contig10764:2685..31351680789148.0455215-CDS-C-tenellus_contig10764:2685..3135Choristocarpus tenellus KU2346CDSC-tenellus_contig10764 2686..3135 +
1680789148.0547652-CDS-C-tenellus_contig10764:3482..41931680789148.0547652-CDS-C-tenellus_contig10764:3482..4193Choristocarpus tenellus KU2346CDSC-tenellus_contig10764 3483..4193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10764.2.1prot_C-tenellus_contig10764.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10764 2686..4193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10764.2.1

>prot_C-tenellus_contig10764.2.1 ID=prot_C-tenellus_contig10764.2.1|Name=mRNA_C-tenellus_contig10764.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=387bp
EAILSKHSLLGGEGSAGACLLSGQAMVRLYLVRMLLEVVTLPGVGPRGAM
AAEGVYVAGIGSPCHRRPVDTVAVAGGSLGVAGGSLDHRGGAELHVCVGG
CPPVLDIRADGIEGVPSPMYVGREKVFWNVCTKALRPDWFISLLETCGEE
AGLAWTFRLLAALFQASEDFVDAFEKADGFRTVATSLPRFSTSLPVLLPA
LALALGVPIRELPPTAEGMGPKDILSMFRRNAGIARGPSGGSGSGGGQSG
EDIPPHPFVRLCVAEVLIPSLRSNGIVIADAAAGEGPGAGAGLRTRGTEV
VCDVLEVERARRVNEVVLGALWEAQNFDPSFARACRSPDVVEALVDALGA
SWDEQQEWGGGWGQGNNDWGSKRDRGSSLLIEGSDED
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mRNA from alignment at C-tenellus_contig10764:2686..4193+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10764.2.1 ID=mRNA_C-tenellus_contig10764.2.1|Name=mRNA_C-tenellus_contig10764.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1508bp|location=Sequence derived from alignment at C-tenellus_contig10764:2686..4193+ (Choristocarpus tenellus KU2346)
GAAGCTATTCTTTCGAAGCACTCGTTGCTAGGTGGTGAGGGCTCAGCTGG
GGCATGCTTGCTGTCAGGACAGGCTATGGTACGGCTGTATCTGGTCCGGA
TGCTGCTTGAGGTGGTGACCCTCCCAGGTGTTGGACCAAGGGGAGCGATG
GCTGCAGAGGGGGTTTATGTTGCTGGCATTGGTTCCCCTTGCCATAGAAG
GCCTGTAGATACAGTGGCTGTTGCAGGAGGAAGCCTGGGAGTGGCTGGGG
GCAGCCTGGACCACCGTGGTGGTGCTGAGCTACACGTTTGTGTTGGTGGA
TGCCCTCCTGTGCTAGACATCCGGGCAGATGGAATTGAGGGTGTGCCCAG
TCCGATGTATGTGGGTAGGGAGAAGGTGTTCTGGAATGTGTGTACGAAGG
CTCTACGTCCCGATTGGTTCATTTCACTGTTGGAGACTTGTGGTGAAGAG
GTGAGGGCCACCTTTTTTCTTGTATGTACCAAGACATTGTCCTTGCTCTT
TCCCCCCTCCCACGTGCGGTTTCACTTTCTTCGCCCTCTTCAGCCGTTGC
TATTTCCCCTGTTTTCGACAACTCGCTGATGAAGGTCCGCTGACATTGCA
TTTTTGAGACGTTTAACTTGACCCCTACAATTGCACCGTGTAGTAGATCT
CTAGCTAATTGCGCTGGAACTGGTCCAAAATTGATCGGCCAATGTGAAGC
AAATCATGCTCCCCCTCTTCCCCCTCTTCCCCCTCTTCTTCCTTTCGACT
TCCTCCCACCAAATATATGCCCGCTTGTGTCAAAATGCCGTTGTAAGGCT
GGCCTTGCTTGGACGTTTCGCCTCTTGGCTGCCCTCTTCCAAGCATCAGA
GGACTTTGTTGACGCCTTTGAGAAGGCGGATGGTTTCCGGACTGTGGCAA
CATCCCTGCCTCGTTTCTCAACATCTCTACCAGTCCTACTCCCAGCGTTG
GCACTAGCTCTTGGGGTCCCCATCAGAGAGCTGCCGCCCACTGCGGAGGG
TATGGGACCCAAGGACATCCTCTCGATGTTCAGGAGGAATGCAGGAATCG
CCCGAGGGCCAAGTGGTGGAAGTGGAAGTGGGGGTGGGCAGTCAGGAGAA
GACATTCCTCCTCACCCCTTTGTTCGCCTTTGTGTAGCGGAGGTCTTGAT
ACCATCTCTTCGTTCCAATGGCATTGTGATTGCTGATGCTGCAGCTGGGG
AGGGTCCTGGGGCAGGGGCGGGGTTGAGGACAAGGGGAACAGAAGTCGTT
TGTGATGTGTTGGAGGTGGAGCGGGCGAGGAGGGTCAATGAGGTGGTGCT
AGGGGCACTGTGGGAGGCACAGAACTTTGACCCGAGCTTTGCTCGTGCCT
GCCGCTCTCCAGATGTGGTTGAGGCCCTTGTGGATGCGCTTGGGGCCAGC
TGGGATGAGCAGCAGGAATGGGGAGGGGGCTGGGGGCAAGGCAACAATGA
CTGGGGGAGCAAAAGGGACCGTGGCAGTAGCCTATTAATAGAAGGGAGTG
ATGAGGAT
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Coding sequence (CDS) from alignment at C-tenellus_contig10764:2686..4193+

>mRNA_C-tenellus_contig10764.2.1 ID=mRNA_C-tenellus_contig10764.2.1|Name=mRNA_C-tenellus_contig10764.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1161bp|location=Sequence derived from alignment at C-tenellus_contig10764:2686..4193+ (Choristocarpus tenellus KU2346)
GAAGCTATTCTTTCGAAGCACTCGTTGCTAGGTGGTGAGGGCTCAGCTGG
GGCATGCTTGCTGTCAGGACAGGCTATGGTACGGCTGTATCTGGTCCGGA
TGCTGCTTGAGGTGGTGACCCTCCCAGGTGTTGGACCAAGGGGAGCGATG
GCTGCAGAGGGGGTTTATGTTGCTGGCATTGGTTCCCCTTGCCATAGAAG
GCCTGTAGATACAGTGGCTGTTGCAGGAGGAAGCCTGGGAGTGGCTGGGG
GCAGCCTGGACCACCGTGGTGGTGCTGAGCTACACGTTTGTGTTGGTGGA
TGCCCTCCTGTGCTAGACATCCGGGCAGATGGAATTGAGGGTGTGCCCAG
TCCGATGTATGTGGGTAGGGAGAAGGTGTTCTGGAATGTGTGTACGAAGG
CTCTACGTCCCGATTGGTTCATTTCACTGTTGGAGACTTGTGGTGAAGAG
GCTGGCCTTGCTTGGACGTTTCGCCTCTTGGCTGCCCTCTTCCAAGCATC
AGAGGACTTTGTTGACGCCTTTGAGAAGGCGGATGGTTTCCGGACTGTGG
CAACATCCCTGCCTCGTTTCTCAACATCTCTACCAGTCCTACTCCCAGCG
TTGGCACTAGCTCTTGGGGTCCCCATCAGAGAGCTGCCGCCCACTGCGGA
GGGTATGGGACCCAAGGACATCCTCTCGATGTTCAGGAGGAATGCAGGAA
TCGCCCGAGGGCCAAGTGGTGGAAGTGGAAGTGGGGGTGGGCAGTCAGGA
GAAGACATTCCTCCTCACCCCTTTGTTCGCCTTTGTGTAGCGGAGGTCTT
GATACCATCTCTTCGTTCCAATGGCATTGTGATTGCTGATGCTGCAGCTG
GGGAGGGTCCTGGGGCAGGGGCGGGGTTGAGGACAAGGGGAACAGAAGTC
GTTTGTGATGTGTTGGAGGTGGAGCGGGCGAGGAGGGTCAATGAGGTGGT
GCTAGGGGCACTGTGGGAGGCACAGAACTTTGACCCGAGCTTTGCTCGTG
CCTGCCGCTCTCCAGATGTGGTTGAGGCCCTTGTGGATGCGCTTGGGGCC
AGCTGGGATGAGCAGCAGGAATGGGGAGGGGGCTGGGGGCAAGGCAACAA
TGACTGGGGGAGCAAAAGGGACCGTGGCAGTAGCCTATTAATAGAAGGGA
GTGATGAGGAT
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