mRNA_C-tenellus_contig10752.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10752.1.1
Unique NamemRNA_C-tenellus_contig10752.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10752.1.1 vs. uniprot
Match: D8LE29_ECTSI (Thiaminase II n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE29_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 1.480e-55
Identity = 86/119 (72.27%), Postives = 97/119 (81.51%), Query Frame = 1
Query:    1 LWHDCQLEAMRSLHHPWTLGLADGSTSRTSFEGYITQDAYFLEAFAKAYGFALTKTSDKDGIRSFHSLIGSVLEELDLHGSYSHKWGVDIENELQSAFPRWRESPYAEWVETYSSPEFE 357
            LW DCQLEAMRSLHHPWTLGLA G TS  SF+ Y+ QDAYFL AFAKAY +AL K  D++ IR+FHSLIGSVLEEL LH SYS KWG+D+ NEL+ AFP W ES YAEW+ETYSS +FE
Sbjct:   18 LWQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFLRAFAKAYAYALAKAEDEEDIRAFHSLIGSVLEELGLHASYSAKWGIDVANELRHAFPNWTESAYAEWIETYSSEDFE 136          
BLAST of mRNA_C-tenellus_contig10752.1.1 vs. uniprot
Match: A0A6H5J5C1_9PHAE (TENA_THI-4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5C1_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.390e-39
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 1
Query:    1 LWHDCQLEAMRSLHHPWTLGLADGSTSRTSFEGYITQDAYFLEAFAKAYGFALTKTSDKDGIRSFHSLIGSVLEELDLHGSYSHKWGVDIEN 276
            LW DCQLEAMRSLHHPWTLGLA G TS  SF+ Y+ QDAYFL AFAKAY +AL K  D++ IR+FHSLIGSVLEEL LH SYS KWG+D+ N
Sbjct:   15 LWQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFLRAFAKAYAYALAKAEDEEDIRAFHSLIGSVLEELGLHASYSAKWGIDVAN 106          
BLAST of mRNA_C-tenellus_contig10752.1.1 vs. uniprot
Match: A0A523IKR8_9DELT (TenA family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523IKR8_9DELT)

HSP 1 Score: 103 bits (257), Expect = 2.950e-25
Identity = 62/158 (39.24%), Postives = 80/158 (50.63%), Query Frame = 1
Query:    1 LWHDCQLEAMRSLHHPWTLGLADGSTSRTSFEGYITQDAYFLEAFAKAYGFALTKTSDKDGIRSFHSLIGSVLEELDLHGSYSHKWGVDIENEL--------------------------------------QSAFPRWR-ESPYAEWVETYSSPEFE 357
            LW   +  A   L+HP+  G+A G  +R SF+ Y+ QDAYFLEAFA+AYG AL K+ D+ GI  F  L+  V EEL LH SY+ +WG+ +E E                                       Q   P+   ESPYAEWV+TYSSP+ E
Sbjct:    6 LWQRNRDLADACLNHPFVQGIASGQLARASFQVYVAQDAYFLEAFARAYGLALAKSPDRAGIVVFKDLLVGVFEELALHRSYAERWGISLEPEPLASTRAYTDFLLRTASLEPVGHTAAAMTPCLRLYAWLGQQLAPKLDPESPYAEWVKTYSSPDLE 163          
BLAST of mRNA_C-tenellus_contig10752.1.1 vs. uniprot
Match: A0A835YZC1_9STRA (Putative TenA family transcriptional activator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 4.550e-25
Identity = 49/97 (50.52%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    1 LWHDCQLEAMRSLHHPWTLGLADGSTSRTSFEGYITQDAYFLEA-------FAKAYGFALTKTSDKDGIRSFHSLIGSVLEELDLHGSYSHKWGVDI 270
            LW  C+ EA+ SL+HP+ L LA G+  + +F+ YITQDA +L+A       FA+AYG ALTK  D +G+R+FH L+GS LEEL LH +++ KWGV++
Sbjct:   19 LWRACKEEALNSLYHPFVLQLATGALPKEAFQIYITQDAIYLQARLRRESAFARAYGHALTKAPDAEGMRAFHKLMGSALEELTLHEAFAEKWGVNL 115          
BLAST of mRNA_C-tenellus_contig10752.1.1 vs. uniprot
Match: A0A6M8BAV9_9CYAN (TenA family protein n=3 Tax=Thermoleptolyngbya TaxID=2303528 RepID=A0A6M8BAV9_9CYAN)

HSP 1 Score: 96.7 bits (239), Expect = 1.530e-22
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 LWHDCQLEAMRSLHHPWTLGLADGSTSRTSFEGYITQDAYFLEAFAKAYGFALTKTSDKDGIRSFHSLIGSVLEELDLHGSYSHKWGVDIENELQSAFPR 300
            LW + Q  A+  L+HP+  G+ DGS  +  F  Y+ QDA+FLEAFA+AY  A  K  D  G + FH+L G VL EL+LH SY+ +WGVD+ +    A  R
Sbjct:    7 LWQENQDLAIACLNHPFVQGIGDGSLDKAKFSYYVGQDAFFLEAFARAYSIAAAKAPDWQGFQVFHTLAGGVLHELNLHESYAIQWGVDLRSVQPGAATR 106          
BLAST of mRNA_C-tenellus_contig10752.1.1 vs. uniprot
Match: A0A3S1CT31_9CYAN (TENA_THI-4 domain-containing protein n=4 Tax=Calotrichaceae TaxID=2661849 RepID=A0A3S1CT31_9CYAN)

HSP 1 Score: 96.3 bits (238), Expect = 2.110e-22
Identity = 48/100 (48.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:    1 LWHDCQLEAMRSLHHPWTLGLADGSTSRTSFEGYITQDAYFLEAFAKAYGFALTKTSDKDGIRSFHSLIGSVLEELDLHGSYSHKWGVDIENELQSAFPR 300
            LW   Q  A   L +P+  G+ DGS  R  F  Y+ QDA+FLEAFA+AY  A  K  D  G R+FH+L G VLEEL LH SY+  WG+DI++    A  R
Sbjct:    7 LWRRNQDLAQACLKNPFVRGIGDGSLPRHKFAYYVGQDAFFLEAFARAYSIAAAKAPDFKGFRTFHALAGGVLEELQLHQSYAKTWGIDIQSVTPGATTR 106          
BLAST of mRNA_C-tenellus_contig10752.1.1 vs. uniprot
Match: I0I500_CALAS (Putative TenA family transcriptional activator n=2 Tax=Caldilinea aerophila TaxID=133453 RepID=I0I500_CALAS)

HSP 1 Score: 96.3 bits (238), Expect = 2.580e-22
Identity = 57/160 (35.62%), Postives = 73/160 (45.62%), Query Frame = 1
Query:    1 LWHDCQLEAMRSLHHPWTLGLADGSTSRTSFEGYITQDAYFLEAFAKAYGFALTKTSDKDGIRSFHSLIGSVLEELDLHGSYSHKWGVDIENELQSAFPR----------WRE-------------------------------SPYAEWVETYSSPEFE 357
            LW   Q  A   L HP+  G+A G+    +F  Y+ QDAYFL+AFA+AY  A  K+ D +G  +FH L G V+EEL LH  Y+ +W VD+     +   R          W E                               SPYA+WV  YSSPEFE
Sbjct:    7 LWQSYQPLADACLRHPFVQGIASGALPTDAFRFYVGQDAYFLQAFARAYFIAAAKSPDWNGFHAFHELAGGVIEELSLHKQYAARWSVDLHGISPATATRRYTDFLLATAWSEDVGVTVAAMAPCMRLYAHLGQRLAEQGVAPDSPYADWVAAYSSPEFE 166          
BLAST of mRNA_C-tenellus_contig10752.1.1 vs. uniprot
Match: A0A535XN83_9CHLR (TenA family protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535XN83_9CHLR)

HSP 1 Score: 92.8 bits (229), Expect = 2.710e-22
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 LWHDCQLEAMRSLHHPWTLGLADGSTSRTSFEGYITQDAYFLEAFAKAYGFALTKTSDKDGIRSFHSLIGSVLEELDLHGSYSHKW 258
            LW   +  A     HP+  GLA+G+   TSF  ++ QDAYFLEAFA+AYG AL ++ D+ G+ +FH+LIG VL+EL LH +Y+ +W
Sbjct:    9 LWAANEDVAQACSAHPFVRGLAEGTLPLTSFRSFVAQDAYFLEAFARAYGSALARSPDRHGLEAFHALIGGVLDELKLHAAYAARW 94          
BLAST of mRNA_C-tenellus_contig10752.1.1 vs. uniprot
Match: UPI001688E71C (TenA family protein n=1 Tax=Microcoleus sp. FACHB-1515 TaxID=2692821 RepID=UPI001688E71C)

HSP 1 Score: 95.5 bits (236), Expect = 4.390e-22
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    1 LWHDCQLEAMRSLHHPWTLGLADGSTSRTSFEGYITQDAYFLEAFAKAYGFALTKTSDKDGIRSFHSLIGSVLEELDLHGSYSHKWGVDIEN 276
            LW   Q  A+  L HP+  G+ DGS SR  F  Y+ QDA+FLEAFA+AY  A  K  D +    FH+L   VL+EL+LHGSY+  WGV + N
Sbjct:    7 LWQANQDLAIACLDHPFVRGIGDGSLSRQKFANYVGQDAFFLEAFARAYSIAAAKAPDWESFGVFHTLANGVLQELELHGSYAANWGVSLAN 98          
BLAST of mRNA_C-tenellus_contig10752.1.1 vs. uniprot
Match: UPI0019EDEF2D (TenA family protein n=1 Tax=Synechococcales cyanobacterium T60_A2020_003 TaxID=2774349 RepID=UPI0019EDEF2D)

HSP 1 Score: 95.5 bits (236), Expect = 4.800e-22
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:    1 LWHDCQLEAMRSLHHPWTLGLADGSTSRTSFEGYITQDAYFLEAFAKAYGFALTKTSDKDGIRSFHSLIGSVLEELDLHGSYSHKWGVDIENELQSAFPR 300
            LW + Q  A+  L +P+  GLADG+ S++ F  Y+ QDA+FLEAFA+AY  A  K+ D DG   FH+L   V +EL LH  Y+ +W VD++N   SA  R
Sbjct:    9 LWDENQNLAIACLQNPFVQGLADGTLSKSRFAHYVGQDAFFLEAFARAYSIAAAKSPDPDGFSIFHNLASGVFDELKLHQQYAAQWDVDLQNVSPSAATR 108          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10752.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE29_ECTSI1.480e-5572.27Thiaminase II n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5J5C1_9PHAE1.390e-3972.83TENA_THI-4 domain-containing protein n=1 Tax=Ectoc... [more]
A0A523IKR8_9DELT2.950e-2539.24TenA family protein n=1 Tax=Deltaproteobacteria ba... [more]
A0A835YZC1_9STRA4.550e-2550.52Putative TenA family transcriptional activator n=1... [more]
A0A6M8BAV9_9CYAN1.530e-2246.00TenA family protein n=3 Tax=Thermoleptolyngbya Tax... [more]
A0A3S1CT31_9CYAN2.110e-2248.00TENA_THI-4 domain-containing protein n=4 Tax=Calot... [more]
I0I500_CALAS2.580e-2235.63Putative TenA family transcriptional activator n=2... [more]
A0A535XN83_9CHLR2.710e-2248.84TenA family protein (Fragment) n=1 Tax=Chloroflexi... [more]
UPI001688E71C4.390e-2248.91TenA family protein n=1 Tax=Microcoleus sp. FACHB-... [more]
UPI0019EDEF2D4.800e-2246.00TenA family protein n=1 Tax=Synechococcales cyanob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10752contigC-tenellus_contig10752:121..1814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LE29
PFAMsTENA_THI-4
Model size357
Max annot lvl2759|Eukaryota
KEGG rclassRC00224,RC00652,RC02832
KEGG koko:K03707
KEGG ReactionR02133,R09993
KEGG Pathwayko00730,ko01100,map00730,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003993,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042131,GO:0042364,GO:0042578,GO:0042723,GO:0042724,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons3
Evalue9.89e-50
EggNOG OGsCOG0819@1|root,2QQU0@2759|Eukaryota
Ec32 ortholog descriptionThiaminase II
Ec32 orthologEc-05_004270.1
EC3.5.99.2
DescriptionTENA/THI-4/PQQC family
Cds size330
COG categoryK
BRITEko00000,ko00001,ko01000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789147.680457-CDS-C-tenellus_contig10752:120..2011680789147.680457-CDS-C-tenellus_contig10752:120..201Choristocarpus tenellus KU2346CDSC-tenellus_contig10752 121..201 -
1680789147.6905732-CDS-C-tenellus_contig10752:982..11171680789147.6905732-CDS-C-tenellus_contig10752:982..1117Choristocarpus tenellus KU2346CDSC-tenellus_contig10752 983..1117 -
1680789147.7101824-CDS-C-tenellus_contig10752:1673..17871680789147.7101824-CDS-C-tenellus_contig10752:1673..1787Choristocarpus tenellus KU2346CDSC-tenellus_contig10752 1674..1787 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789147.722481-UTR-C-tenellus_contig10752:1787..18141680789147.722481-UTR-C-tenellus_contig10752:1787..1814Choristocarpus tenellus KU2346UTRC-tenellus_contig10752 1788..1814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10752.1.1prot_C-tenellus_contig10752.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10752 121..1787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10752.1.1

>prot_C-tenellus_contig10752.1.1 ID=prot_C-tenellus_contig10752.1.1|Name=mRNA_C-tenellus_contig10752.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=110bp
MRSLHHPWTLGLADGSTSRTSFEGYITQDAYFLEAFAKAYGFALTKTSDK
DGIRSFHSLIGSVLEELDLHGSYSHKWGVDIENELQSAFPRWRESPYAEW
VETYSSPEFE
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mRNA from alignment at C-tenellus_contig10752:121..1814-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10752.1.1 ID=mRNA_C-tenellus_contig10752.1.1|Name=mRNA_C-tenellus_contig10752.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1694bp|location=Sequence derived from alignment at C-tenellus_contig10752:121..1814- (Choristocarpus tenellus KU2346)
CTATGGCATGATTGCCAGTTGGAAGCCATGCGGAGCCTGCACCACCCGTG GACCCTTGGCCTCGCTGATGGAAGCACGTCCCGCACGAGCTTCGAGGGAT ATATCACCCAGGATGCCTATTTCTTAGAGGCTTTTGCAAAGGTTACCTTT GAAAGATTACTTTTTCGTTTGCTTCTTGAGCACTTTTCATTCCGCTTCCA AAATCCCTTGAATGTTTGAAGGTTGTGGTGGGTTGACCTGCGCTGCTGCA CTGAATGTTGAAAGGCAAGCTTAGCTATATGCCCAATCCTCATGGATTGC TGCATGTCTTATTTACAGTCTTCATCACAGCAGCACATACCTCTTCGTGA AAACCCTCACAAGAGCCTCTATTATCATGTTACACACCTTCATTATCGGC AGACTCGCCACAAAACAGAAAATACTTCCTGTTCCATAGGAGAAGAGGGG GTAAATGCATTAAATGACAGCATTGATTACCAAAAAAATGTGCTCATTTC GATTTCCCTCCCTCCTCATGGATGATTACGCTTACAGCATGTCGACACTC CTCCACATCATAAATGAGCCATCACGATTGACTCTTGGGCACATGGGCAA AAACGACGTAGTTCAAGGCAGGGCCTCTTGCTGTTCATTTTGTCTGGCAA CCATGTTACCCCTCTGTGACTCTTAAATAACCCCACTTCCTGTTCAGGCG TATGGCTTTGCTCTCACGAAAACATCAGACAAGGACGGAATCCGCTCCTT CCATTCCCTGATTGGGTCTGTGCTAGAAGAGCTGGACCTCCATGGATCAT ATTCACATAAGTGGGGAGTAGACATTGAGAATGTAAGAGAGGGAGGCAGG GAGGGGAGGAGGGAGGGAAGGAGAGATATGAGGATAACGGGAGGTGGGAG GTCATGCATGATAGACACGAGACAATCAATACTCGTGGAAGAGACTGAAA TCGCCTTGCCTGCTGGCTGCTCCGCTCCTCCAACAACACCCATCACCTCT GCTTGTACACCCGAGTAAAGCTGACGTGCAGTACCCCCCCACCCCCGTTC CCTTGTTCCGCGCCTTTCACCTGTTCAGCTGGCATCTCCACTAGAGGCCA CTACTGATTACGTACATTTTCTTCACGGTGTGGCATCAGACCCCTCTTCT ACTGTTGCGGATGTGCTTGCGAGCATGGCTCCATGCATGAGGCTATATGC TTTCTTGGGAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTG TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGATGTGGGGGGGAAGGGCA AGGAGCAGGCGGAGGGCCGGGGGCGGAGTAAGTGGAAAGGGTGAAAATGT AGACAGTCATTGTGAATGACACATATGGACACTATTGTGGAGGGATTTTA GTTCAGGTGTGGGGTTGACATGTTGCTGTGCTACATTTTCAAAAAGTTTT TTTTTTATCATACGTCTGTGGTGCTGTCATCATGTTGCACAAAACAAAAA TCCTAAAGGATATTTCCCCTTCCCCTGCCCACCATCCCGTTGTTGGTTCC CTGTTTCTTGCCATGCCCTCGATGATGGTGCTATACAAACCCCGGGGGAG GGGATGAGAACAGGAACTGCAGTCTGCATTTCCCAGATGGAGGGAAAGTC CCTATGCAGAATGGGTAGAGACATACAGCTCGCCTGAGTTTGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10752:121..1814-

>mRNA_C-tenellus_contig10752.1.1 ID=mRNA_C-tenellus_contig10752.1.1|Name=mRNA_C-tenellus_contig10752.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=330bp|location=Sequence derived from alignment at C-tenellus_contig10752:121..1814- (Choristocarpus tenellus KU2346)
ATGCGGAGCCTGCACCACCCGTGGACCCTTGGCCTCGCTGATGGAAGCAC
GTCCCGCACGAGCTTCGAGGGATATATCACCCAGGATGCCTATTTCTTAG
AGGCTTTTGCAAAGGCGTATGGCTTTGCTCTCACGAAAACATCAGACAAG
GACGGAATCCGCTCCTTCCATTCCCTGATTGGGTCTGTGCTAGAAGAGCT
GGACCTCCATGGATCATATTCACATAAGTGGGGAGTAGACATTGAGAATG
AACTGCAGTCTGCATTTCCCAGATGGAGGGAAAGTCCCTATGCAGAATGG
GTAGAGACATACAGCTCGCCTGAGTTTGAG
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