mRNA_C-tenellus_contig10742.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10742.1.1
Unique NamemRNA_C-tenellus_contig10742.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10742.1.1 vs. uniprot
Match: D8LP22_ECTSI (CDGSH iron sulfur domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP22_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.830e-33
Identity = 59/91 (64.84%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:   31 ITAAASHAFVLQSPPSLVA--TSRSAERINTMH-DLESPKVATMDAVDAGEKKVYCRCWKSDTFPLCDGNHVKHNKETGDNVGPLIVSGPK 294
            +T   ++AFV+ +  ++V   T+R+AE+INT+  +L+ PKV TMD+VDAG KKVYCRCWKS TFPLCDG HVKHN+ TGDNVGPLIVSGPK
Sbjct:   10 VTLGCANAFVIPAGRTVVRAETARAAEKINTIEFELDKPKVVTMDSVDAGGKKVYCRCWKSGTFPLCDGAHVKHNEATGDNVGPLIVSGPK 100
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BLAST of mRNA_C-tenellus_contig10742.1.1 vs. uniprot
Match: A0A7S2UEE3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEE3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.640e-30
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:   52 AFVLQSPPSLVATSRSAERINTMHDLESPKVATMDAVDAGEKKVYCRCWKSDTFPLCDGNHVKHNKETGDNVGPLIVSGPK 294
            AF   +     +T   AERINT  DL+SPKVATM+ ++ G KKVYCRCW+S TFPLCDG+H+KHN+ TGDNVGPLIVS PK
Sbjct:   17 AFTFVAKSHSASTKLFAERINTQVDLDSPKVATMEKLEPGTKKVYCRCWQSGTFPLCDGSHMKHNEATGDNVGPLIVSVPK 97
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BLAST of mRNA_C-tenellus_contig10742.1.1 vs. uniprot
Match: A0A7S2TZX7_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TZX7_9EUKA)

HSP 1 Score: 113 bits (282), Expect = 5.720e-30
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:  103 ERINTMHDLESPKVATMDAVDAGEKKVYCRCWKSDTFPLCDGNHVKHNKETGDNVGPLIVSGPK 294
            ERINT  DLESPKV TM+ +  GEKKV+CRCWKS TFPLCDG H K NKETGDNVGPLIVSGPK
Sbjct:   85 ERINTEVDLESPKVVTMEDLGKGEKKVFCRCWKSGTFPLCDGTHAKWNKETGDNVGPLIVSGPK 148
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BLAST of mRNA_C-tenellus_contig10742.1.1 vs. uniprot
Match: A0A7S0H1H1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H1H1_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 1.410e-29
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:  100 AERINTMHDLESPKVATMDAVDAGEKKVYCRCWKSDTFPLCDGNHVKHNKETGDNVGPLIVSGPK 294
            AE+IN + DLESPKV TM+ +  GEKKVYCRCWKS TFPLCDG H K NK++GDNVGPLIVSGPK
Sbjct:   80 AEKINELVDLESPKVVTMEELKVGEKKVYCRCWKSGTFPLCDGTHAKWNKQSGDNVGPLIVSGPK 144
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BLAST of mRNA_C-tenellus_contig10742.1.1 vs. uniprot
Match: A0A835ZBW8_9STRA (CDGSH iron sulfur domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBW8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.810e-29
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    7 MKSILALAITAAASHAFVLQSPPSLVATSRSAERINTMHDLESPKVATMDAVDAGEKKVYCRCWKSDTFPLCDGNHVKHNKETGDNVGPLIVS 285
            M+++ A+A+ A+ +         S+ A +  +ERIN   DLESPKVATM+ + AG KKVYCRCWKS TFPLC+G HVKHN+E GDNVGPLIVS
Sbjct:    1 MQTVFAVALLASVASVPAFVPSSSIRAPTHLSERINNKIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVS 93
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BLAST of mRNA_C-tenellus_contig10742.1.1 vs. uniprot
Match: B8CEB8_THAPS (ZnF_CDGSH domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEB8_THAPS)

HSP 1 Score: 108 bits (269), Expect = 4.920e-29
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:  106 RINTMHDLESPKVATMDAVDAGEKKVYCRCWKSDTFPLCDGNHVKHNKETGDNVGPLIVS 285
            RIN   DL+SPKVATMD +  GEKKVYCRCWKS+TFPLCD  HV HNKETGDNVGPLIVS
Sbjct:    3 RINNKIDLDSPKVATMDKICDGEKKVYCRCWKSETFPLCDAAHVAHNKETGDNVGPLIVS 62
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BLAST of mRNA_C-tenellus_contig10742.1.1 vs. uniprot
Match: A0A7S3JTK3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTK3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.390e-28
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:  106 RINTMHDLESPKVATMDAVDAGEKKVYCRCWKSDTFPLCDGNHVKHNKETGDNVGPLIVSGPK 294
            +INTM DL+S KV TMD ++AG+KKVYCRCW S TFPLCDG H KHN+ TGDNVGPLIVS PK
Sbjct:   52 KINTMIDLDSAKVVTMDELEAGKKKVYCRCWLSGTFPLCDGTHAKHNEATGDNVGPLIVSSPK 114
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BLAST of mRNA_C-tenellus_contig10742.1.1 vs. uniprot
Match: A0A6S9KZB4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KZB4_HETAK)

HSP 1 Score: 107 bits (268), Expect = 1.980e-28
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:  106 RINTMHDLESPKVATMDAVDAGEKKVYCRCWKSDTFPLCDGNHVKHNKETGDNVGPLIVS 285
            RINT  DLES KVATM+A+ +GEKKVYCRCWKSDTFPLCDG H+ HNK  GDNVGPLIV+
Sbjct:   40 RINTKIDLESEKVATMEALSSGEKKVYCRCWKSDTFPLCDGKHMDHNKACGDNVGPLIVT 99
[Close]
BLAST of mRNA_C-tenellus_contig10742.1.1 vs. uniprot
Match: A0A4D9DCC5_9STRA (ZnF_CDGSH domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCC5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.490e-27
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:  100 AERINTMHDLESPKVATMDAVDAGEKKVYCRCWKSDTFPLCDGNHVKHNKETGDNVGPLIVSGPKP 297
            A +INT  +LE+PKV TM  +  GEKKV+CRCW+S TFPLCDG H+KHN+ TGDNVGPLI+S PKP
Sbjct:   33 ASKINTKVELENPKVVTMTQLAPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNVGPLIISNPKP 98
[Close]
BLAST of mRNA_C-tenellus_contig10742.1.1 vs. uniprot
Match: A0A1E7EJJ5_9STRA (Iron-sulfur domain-containing NEET-like protein n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EJJ5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.820e-27
Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 1 
Query:    1 TMMKSILALAITAAASHAFVLQSPPSLVATS--------RSAERINTMHDLESPKVATMDAVDAGEKKVYCRCWKSDTFPLCDGNHVKHNKETGDNVGPLIVSGPK 294
            T++K+I  L+I A AS      +P ++  TS          A +INT+ DL++ KV  M+ +DAG+K VYCRCWKS TFPLCDGNHV HNK TGDNVGPLIV+  K
Sbjct:    3 TLLKTITVLSICATAS---AFSTPVTIRTTSILSVAVEVPEASKINTLIDLDAEKVVNMEKLDAGKKAVYCRCWKSGTFPLCDGNHVAHNKATGDNVGPLIVTAAK 105
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10742.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP22_ECTSI1.830e-3364.84CDGSH iron sulfur domain-containing protein n=1 Ta... [more]
A0A7S2UEE3_9STRA2.640e-3064.20Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2TZX7_9EUKA5.720e-3079.69Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S0H1H1_9EUKA1.410e-2975.38Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A835ZBW8_9STRA2.810e-2958.06CDGSH iron sulfur domain-containing protein n=1 Ta... [more]
B8CEB8_THAPS4.920e-2980.00ZnF_CDGSH domain-containing protein (Fragment) n=1... [more]
A0A7S3JTK3_9STRA1.390e-2874.60Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6S9KZB4_HETAK1.980e-2878.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9DCC5_9STRA1.490e-2768.18ZnF_CDGSH domain-containing protein n=1 Tax=Nannoc... [more]
A0A1E7EJJ5_9STRA1.820e-2752.83Iron-sulfur domain-containing NEET-like protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10742contigC-tenellus_contig10742:1452..2015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LP22
PFAMsMitoNEET_N,zf-CDGSH
Model size300
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
GOsGO:0000422,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0006914,GO:0006996,GO:0007005,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009894,GO:0009987,GO:0010150,GO:0010259,GO:0010506,GO:0012505,GO:0016020,GO:0016043,GO:0019222,GO:0019867,GO:0022411,GO:0031090,GO:0031323,GO:0031329,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0032501,GO:0032502,GO:0042175,GO:0042592,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048037,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051536,GO:0051537,GO:0051540,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0061726,GO:0061919,GO:0065007,GO:0065008,GO:0071840,GO:0072593,GO:0090693,GO:0098588,GO:0098771,GO:0098805,GO:0098827,GO:0099402,GO:1903008
Exons2
Evalue2.03e-34
EggNOG OGsKOG3461@1|root,KOG3461@2759|Eukaryota
Ec32 ortholog descriptionIron sulphur-containing domain, CDGSH-type, subfamily
Ec32 orthologEc-06_006890.1
Description2 iron, 2 sulfur cluster binding
Cds size297
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789147.1956031-UTR-C-tenellus_contig10742:1451..14541680789147.1956031-UTR-C-tenellus_contig10742:1451..1454Choristocarpus tenellus KU2346UTRC-tenellus_contig10742 1452..1454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789147.2100227-CDS-C-tenellus_contig10742:1454..15921680789147.2100227-CDS-C-tenellus_contig10742:1454..1592Choristocarpus tenellus KU2346CDSC-tenellus_contig10742 1455..1592 +
1680789147.2227232-CDS-C-tenellus_contig10742:1856..20151680789147.2227232-CDS-C-tenellus_contig10742:1856..2015Choristocarpus tenellus KU2346CDSC-tenellus_contig10742 1857..2015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10742.1.1prot_C-tenellus_contig10742.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10742 1455..2015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10742.1.1

>prot_C-tenellus_contig10742.1.1 ID=prot_C-tenellus_contig10742.1.1|Name=mRNA_C-tenellus_contig10742.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=99bp
MMKSILALAITAAASHAFVLQSPPSLVATSRSAERINTMHDLESPKVATM
DAVDAGEKKVYCRCWKSDTFPLCDGNHVKHNKETGDNVGPLIVSGPKP*
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mRNA from alignment at C-tenellus_contig10742:1452..2015+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10742.1.1 ID=mRNA_C-tenellus_contig10742.1.1|Name=mRNA_C-tenellus_contig10742.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=564bp|location=Sequence derived from alignment at C-tenellus_contig10742:1452..2015+ (Choristocarpus tenellus KU2346)
ACAATGATGAAGTCCATCCTCGCGCTTGCGATAACCGCAGCAGCATCGCA
CGCATTCGTGCTGCAGAGTCCGCCATCCTTGGTGGCCACAAGTCGTTCTG
CTGAAAGGATAAACACCATGCATGACCTTGAGAGTCCCAAGGTGTGTTGG
TCGCCCTCATTCCCAAGAGCGCCTCACTGGTGCCTTTTATTCTGACAAGA
ATATCTTATACTCTCCATTCCCTTGCATTCCTGATATTAGCAGCAAATAA
TGCGCCGCAGCAATTGAGACCTCTTCGCCTTACAATTTTGTCCGAATTTC
TCTTTCGCAACCCCCATAGTGCCGCTCATGATCGGCTGCGAGCTTTGCTC
TGCTTGCAACGACCGAACGAACTGCAATCCGAATGTCGTTATGCACCCTT
TGCAGGTTGCGACGATGGACGCTGTTGATGCTGGCGAGAAAAAGGTGTAC
TGCCGGTGCTGGAAGTCTGACACGTTCCCTCTATGCGATGGCAACCACGT
CAAACACAATAAGGAGACAGGGGACAATGTGGGTCCCTTGATTGTCTCTG
GCCCTAAGCCCTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10742:1452..2015+

>mRNA_C-tenellus_contig10742.1.1 ID=mRNA_C-tenellus_contig10742.1.1|Name=mRNA_C-tenellus_contig10742.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=297bp|location=Sequence derived from alignment at C-tenellus_contig10742:1452..2015+ (Choristocarpus tenellus KU2346)
ATGATGAAGTCCATCCTCGCGCTTGCGATAACCGCAGCAGCATCGCACGC
ATTCGTGCTGCAGAGTCCGCCATCCTTGGTGGCCACAAGTCGTTCTGCTG
AAAGGATAAACACCATGCATGACCTTGAGAGTCCCAAGGTTGCGACGATG
GACGCTGTTGATGCTGGCGAGAAAAAGGTGTACTGCCGGTGCTGGAAGTC
TGACACGTTCCCTCTATGCGATGGCAACCACGTCAAACACAATAAGGAGA
CAGGGGACAATGTGGGTCCCTTGATTGTCTCTGGCCCTAAGCCCTAG
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