mRNA_C-tenellus_contig10696.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10696.1.1
Unique NamemRNA_C-tenellus_contig10696.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10696.1.1 vs. uniprot
Match: A0A1Q3CYK1_CEPFO (Uncharacterized protein (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3CYK1_CEPFO)

HSP 1 Score: 59.7 bits (143), Expect = 8.900e-9
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  142 WFCDSGCSVHMTNNPTALIDPKPVVRSSVTVGDGKVLQVSVIGNLSLSCVQNGEVSNFILHNVSFVPGLKFNLLSMIQ 375
            W+ DSGCS HMT + +  ID K V    VT GD K  ++  IG++       G   + ++ NVS+V GL+ NLLS+ Q
Sbjct:   43 WYVDSGCSKHMTGDKSLFIDVKEVDGGKVTFGDNKKAKICGIGSI-------GNKFSTLIENVSYVVGLRHNLLSVSQ 113          
BLAST of mRNA_C-tenellus_contig10696.1.1 vs. uniprot
Match: A0A0K8T6E1_LYGHE (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8T6E1_LYGHE)

HSP 1 Score: 61.2 bits (147), Expect = 2.470e-8
Identity = 28/83 (33.73%), Postives = 50/83 (60.24%), Query Frame = 1
Query:  142 WFCDSGCSVHMTNNPTALIDPK-PVVRSSVTVGDGKVLQVSVIGNLSLSCVQNGEVSNFILHNVSFVPGLKFNLLSMIQAGEQ 387
            W+ DSG ++H+T     L + + P  +SSVT   G+ L ++ +G+  +     G+V    + NVS+VPGL++NL+S ++ G +
Sbjct:   34 WYIDSGATIHVTGRKDWLTNLREPSTKSSVTTASGEKLPITAVGDTHVLLKIGGKVKKTPIRNVSYVPGLRYNLISCVELGRK 116          
BLAST of mRNA_C-tenellus_contig10696.1.1 vs. uniprot
Match: A0A1Q3DIK0_CEPFO (Uncharacterized protein (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3DIK0_CEPFO)

HSP 1 Score: 58.2 bits (139), Expect = 3.180e-8
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1
Query:  142 WFCDSGCSVHMTNNPTALIDPKPVVRSSVTVGDGKVLQVSVIGNLSLSCVQNGEVSNFILHNVSFVPGLKFNLLSMIQ 375
            W+ DSGCS HMT + +  ID K V    VT GD    ++  IG++       G   + ++ NVS+V GLK NLLS+ Q
Sbjct:    1 WYVDSGCSKHMTGDKSLFIDLKEVDGGKVTFGDNNKAKIVGIGSI-------GNKLSTLIENVSYVVGLKHNLLSVSQ 71          
BLAST of mRNA_C-tenellus_contig10696.1.1 vs. uniprot
Match: A0A0A9WQD4_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WQD4_LYGHE)

HSP 1 Score: 61.2 bits (147), Expect = 3.940e-8
Identity = 28/83 (33.73%), Postives = 50/83 (60.24%), Query Frame = 1
Query:  142 WFCDSGCSVHMTNNPTALIDPK-PVVRSSVTVGDGKVLQVSVIGNLSLSCVQNGEVSNFILHNVSFVPGLKFNLLSMIQAGEQ 387
            W+ DSG ++H+T     L + + P  +SSVT   G+ L ++ +G+  +     G+V    + NVS+VPGL++NL+S ++ G +
Sbjct:  259 WYIDSGATIHVTGRKDWLTNLREPSTKSSVTTASGEKLPITAVGDTHVLLKIGGKVKKTPIRNVSYVPGLRYNLISCVELGRK 341          
BLAST of mRNA_C-tenellus_contig10696.1.1 vs. uniprot
Match: A0A5B6W7R5_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6W7R5_9ROSI)

HSP 1 Score: 60.1 bits (144), Expect = 6.860e-8
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  139 IWFCDSGCSVHMTNNPTALIDPKPVVRSSVTVGDGKVLQVSVIGNLSLSCVQNGEVSNFILHNVSFVPGLKFNLLSMIQ 375
            +W+ DSGCS H+T++    ID KP     +T GD    Q+  IG++       G+ S+ I+ NV +V G K NLLS+ Q
Sbjct:  166 LWYLDSGCSRHITDDKIHFIDLKPKSGRELTFGDNSTKQIKGIGSI-------GKTSSIIIENVLYVSGFKHNLLSISQ 237          
BLAST of mRNA_C-tenellus_contig10696.1.1 vs. uniprot
Match: A0A1Q3BVX3_CEPFO (Uncharacterized protein (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BVX3_CEPFO)

HSP 1 Score: 58.2 bits (139), Expect = 3.940e-7
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1
Query:  142 WFCDSGCSVHMTNNPTALIDPKPVVRSSVTVGDGKVLQVSVIGNLSLSCVQNGEVSNFILHNVSFVPGLKFNLLSMIQ 375
            W+ DSGCS HMT + +  ID K V    VT GD    ++  IG++       G   + ++ NVS+V GLK NLLS+ Q
Sbjct:    9 WYVDSGCSKHMTGDKSLFIDLKEVDGGKVTFGDNNKAKICGIGSI-------GNNFSTLIENVSYVVGLKHNLLSVSQ 79          
BLAST of mRNA_C-tenellus_contig10696.1.1 vs. uniprot
Match: UPI00080A170B (uncharacterized protein LOC108347874 n=1 Tax=Phaseolus angularis TaxID=3914 RepID=UPI00080A170B)

HSP 1 Score: 56.6 bits (135), Expect = 4.280e-7
Identity = 33/83 (39.76%), Postives = 44/83 (53.01%), Query Frame = 1
Query:  127 EVDKIWFCDSGCSVHMTNNPTALIDPKPVVRSSVTVGDGKVLQVSVIGNLSLSCVQNGEVSNFILHNVSFVPGLKFNLLSMIQ 375
            E + +W+ DSGCS HMT +PT  I         VT GD    +V  IG +         +S++I+ NV  V GLK NLLS+ Q
Sbjct:   91 EKEAMWYMDSGCSRHMTRDPTRFISLSYKTSCCVTYGDNNKDKVVGIGKIQ-------TLSSYIIENVLLVDGLKHNLLSINQ 166          
BLAST of mRNA_C-tenellus_contig10696.1.1 vs. uniprot
Match: A0A1Q3DIL5_CEPFO (Uncharacterized protein (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3DIL5_CEPFO)

HSP 1 Score: 55.5 bits (132), Expect = 4.330e-7
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 1
Query:  142 WFCDSGCSVHMTNNPTALIDPKPVVRSSVTVGDGKVLQVSVIGNLSLSCVQNGEVSNFILHNVSFVPGLKFNLLSMIQ 375
            W+ DSGCS HMT + +  ID K V    VT  D    ++  IG++       G   + ++ NVS+V GLK NLLS+ Q
Sbjct:    6 WYVDSGCSKHMTGDKSLFIDLKEVDGGKVTFRDNNKAKICGIGSI-------GNKFSTLIENVSYVVGLKHNLLSVSQ 76          
BLAST of mRNA_C-tenellus_contig10696.1.1 vs. uniprot
Match: A0A1Q3BGS7_CEPFO (Uncharacterized protein (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BGS7_CEPFO)

HSP 1 Score: 56.6 bits (135), Expect = 5.970e-7
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 1
Query:  142 WFCDSGCSVHMTNNPTALIDPKPVVRSSVTVGDGKVLQVSVIGNLSLSCVQNGEVSNFILHNVSFVPGLKFNLLSMIQ 375
            W+ DSGCS HMT + +  I+ K V    VT GD    ++  IG++       G   + ++ NVS+V GLK NLLS+ Q
Sbjct:    6 WYVDSGCSKHMTGDKSLFINLKEVDGGKVTFGDNNKAKICGIGSI-------GNKFSTLIENVSYVVGLKHNLLSVSQ 76          
BLAST of mRNA_C-tenellus_contig10696.1.1 vs. uniprot
Match: A0A151QLM8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QLM8_CAJCA)

HSP 1 Score: 56.6 bits (135), Expect = 1.140e-6
Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = 1
Query:  142 WFCDSGCSVHMTNNPTALIDPKPVVRSSVTVGD---GKVLQVSVIGNLSLSCVQNGEVSNFILHNVSFVPGLKFNLLSMIQAGEQ 387
            W+ DSGCS HMT +P+ L+  K      VT GD   GK+L    IGN           S+ ++ NV FV GLK+ LLS+ Q  ++
Sbjct:    1 WYLDSGCSRHMTGDPSKLLSLKLKNEGFVTYGDNNKGKILGHGNIGN---------STSSTLIENVLFVEGLKYKLLSISQLSDK 76          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10696.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q3CYK1_CEPFO8.900e-941.03Uncharacterized protein (Fragment) n=1 Tax=Cephalo... [more]
A0A0K8T6E1_LYGHE2.470e-833.73gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A1Q3DIK0_CEPFO3.180e-841.03Uncharacterized protein (Fragment) n=1 Tax=Cephalo... [more]
A0A0A9WQD4_LYGHE3.940e-833.73Retrovirus-related Pol polyprotein from transposon... [more]
A0A5B6W7R5_9ROSI6.860e-839.24Retrovirus-related Pol polyprotein from transposon... [more]
A0A1Q3BVX3_CEPFO3.940e-741.03Uncharacterized protein (Fragment) n=1 Tax=Cephalo... [more]
UPI00080A170B4.280e-739.76uncharacterized protein LOC108347874 n=1 Tax=Phase... [more]
A0A1Q3DIL5_CEPFO4.330e-739.74Uncharacterized protein (Fragment) n=1 Tax=Cephalo... [more]
A0A1Q3BGS7_CEPFO5.970e-739.74Uncharacterized protein (Fragment) n=1 Tax=Cephalo... [more]
A0A151QLM8_CAJCA1.140e-640.00Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10696contigC-tenellus_contig10696:4265..4696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3750.XP_008357221.1
PFAMsDUF4219,Retrotran_gag_2,gag_pre-integrs,zf-CCHC
Model size434
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.09e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37ITA@33090|Viridiplantae,3GHQJ@35493|Streptophyta
Descriptiongag-polypeptide of LTR copia-type
Cds size432
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789144.4500296-CDS-C-tenellus_contig10696:4264..46961680789144.4500296-CDS-C-tenellus_contig10696:4264..4696Choristocarpus tenellus KU2346CDSC-tenellus_contig10696 4265..4696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10696.1.1prot_C-tenellus_contig10696.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10696 4265..4696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10696.1.1

>prot_C-tenellus_contig10696.1.1 ID=prot_C-tenellus_contig10696.1.1|Name=mRNA_C-tenellus_contig10696.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=144bp
MVKGRGVAMQATLMKLVMVNRKWYTSSQLGGFSSVSNDGSIVEVDKIWFC
DSGCSVHMTNNPTALIDPKPVVRSSVTVGDGKVLQVSVIGNLSLSCVQNG
EVSNFILHNVSFVPGLKFNLLSMIQAGEQSEGELYWKGENSLRL
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mRNA from alignment at C-tenellus_contig10696:4265..4696-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10696.1.1 ID=mRNA_C-tenellus_contig10696.1.1|Name=mRNA_C-tenellus_contig10696.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=432bp|location=Sequence derived from alignment at C-tenellus_contig10696:4265..4696- (Choristocarpus tenellus KU2346)
ATGGTAAAGGGAAGGGGAGTGGCAATGCAAGCAACACTGATGAAGCTGGT GATGGTGAACAGAAAGTGGTACACCAGTTCACAACTTGGAGGATTCTCAT CGGTGAGCAATGATGGGAGTATAGTCGAAGTGGATAAAATTTGGTTCTGT GACAGTGGGTGTTCGGTTCATATGACAAACAATCCTACTGCTCTGATAGA TCCAAAACCTGTGGTAAGGTCATCGGTGACTGTTGGGGATGGAAAGGTTC TACAAGTTTCAGTCATAGGTAATTTGTCACTATCTTGTGTACAGAATGGG GAAGTTTCAAACTTCATCTTGCACAATGTATCATTTGTTCCTGGGTTAAA ATTTAATCTCCTCTCAATGATACAAGCGGGGGAACAATCAGAGGGAGAAT TATATTGGAAAGGAGAAAATTCTTTGAGATTA
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Coding sequence (CDS) from alignment at C-tenellus_contig10696:4265..4696-

>mRNA_C-tenellus_contig10696.1.1 ID=mRNA_C-tenellus_contig10696.1.1|Name=mRNA_C-tenellus_contig10696.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=432bp|location=Sequence derived from alignment at C-tenellus_contig10696:4265..4696- (Choristocarpus tenellus KU2346)
ATGGTAAAGGGAAGGGGAGTGGCAATGCAAGCAACACTGATGAAGCTGGT
GATGGTGAACAGAAAGTGGTACACCAGTTCACAACTTGGAGGATTCTCAT
CGGTGAGCAATGATGGGAGTATAGTCGAAGTGGATAAAATTTGGTTCTGT
GACAGTGGGTGTTCGGTTCATATGACAAACAATCCTACTGCTCTGATAGA
TCCAAAACCTGTGGTAAGGTCATCGGTGACTGTTGGGGATGGAAAGGTTC
TACAAGTTTCAGTCATAGGTAATTTGTCACTATCTTGTGTACAGAATGGG
GAAGTTTCAAACTTCATCTTGCACAATGTATCATTTGTTCCTGGGTTAAA
ATTTAATCTCCTCTCAATGATACAAGCGGGGGAACAATCAGAGGGAGAAT
TATATTGGAAAGGAGAAAATTCTTTGAGATTA
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