mRNA_C-tenellus_contig10675.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10675.1.1
Unique NamemRNA_C-tenellus_contig10675.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10675.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10675contigC-tenellus_contig10675:421..2610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size875
Hectar predicted targeting categoryother localisation
Exons3
Cds size738
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789143.4120274-CDS-C-tenellus_contig10675:420..6791680789143.4120274-CDS-C-tenellus_contig10675:420..679Choristocarpus tenellus KU2346CDSC-tenellus_contig10675 421..679 -
1680789143.4272888-CDS-C-tenellus_contig10675:1677..19041680789143.4272888-CDS-C-tenellus_contig10675:1677..1904Choristocarpus tenellus KU2346CDSC-tenellus_contig10675 1678..1904 -
1680789143.4361649-CDS-C-tenellus_contig10675:2222..24741680789143.4361649-CDS-C-tenellus_contig10675:2222..2474Choristocarpus tenellus KU2346CDSC-tenellus_contig10675 2223..2474 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789143.4445732-UTR-C-tenellus_contig10675:2474..26101680789143.4445732-UTR-C-tenellus_contig10675:2474..2610Choristocarpus tenellus KU2346UTRC-tenellus_contig10675 2475..2610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10675.1.1prot_C-tenellus_contig10675.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10675 421..2474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10675.1.1

>prot_C-tenellus_contig10675.1.1 ID=prot_C-tenellus_contig10675.1.1|Name=mRNA_C-tenellus_contig10675.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=246bp
MESSMVGKGEGFRGLLQRLEQSSQYSVLGCVDGQDQGEGEEWGECRLLQG
QGLGQQGCRGQSQTPTTLDQWGTVLGEALAYDPEVARLASVSKYGLSTSL
RRGNNGDCVHNPRLLDFGRVLLRVPSKEVEEDGDTCEEEEEEAEEEEDQD
EEIGEYIPEGYDFCGERWAVVNKKNKSSGCGGGLRHSTKGSLSSNGQSGT
EGQGHGHGLGDEEGQEQRILKGKGGGAKEGGQGNGGLDLGNSQEYR
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mRNA from alignment at C-tenellus_contig10675:421..2610-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10675.1.1 ID=mRNA_C-tenellus_contig10675.1.1|Name=mRNA_C-tenellus_contig10675.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2190bp|location=Sequence derived from alignment at C-tenellus_contig10675:421..2610- (Choristocarpus tenellus KU2346)
CTCATGATGTGTGTCAATTCAAGATTCAGGATATTCGTTTTTGGTACTAG
TATATACTATATATTAGTAGGTAGAGGTCTTTGTCTTTGTCTTGTTGTCA
TCTTTCCTAATCACGTTGCCAGTCGATGTCTGCAACATGGAATCGAGCAT
GGTTGGGAAGGGAGAGGGATTCAGGGGATTGCTTCAGCGACTAGAGCAGA
GTAGTCAATATTCTGTGCTTGGTTGTGTGGATGGCCAGGATCAGGGGGAA
GGGGAGGAGTGGGGAGAATGTCGTTTGTTGCAAGGGCAAGGACTTGGCCA
ACAAGGCTGTCGTGGGCAATCACAGACTCCTACCACCCTCGATCAATGGG
GAACGGTTTTGGGTGAGGCCCTGGCTTATGATCCCGAGGTTAGTGTCTCT
TCTACCACAGTCGCTTGTAGCAGTGAACGGAGTGGGCGATACCTGCGCAA
AGATACTCTGTGATACTGCAGGAACTTAGGAAGTGACAATTTACAGAAAC
ACTCTTCCCGATCTGGCTACCACATTCATTGAATCCCGTTAAACTTGACT
TATAAAGACTCGCTCCGGAGAAAATTGGCAACCTTGGAGGTGGTGGGAAC
TACTGTTTCTGTGTTCTCAATTTATTAAGATCCTATCTTGTTCCTTCTTT
GTTCTATCACTTGATGCTGCCCACCCCATTGCTGGCACTCCTGCACCCCA
CGCAAGGTGGCCCGTCTAGCATCTGTTTCAAAATATGGCCTGTCCACTAG
CCTCAGAAGAGGAAACAATGGGGATTGCGTTCACAACCCGCGACTGCTAG
ATTTTGGGCGGGTCTTATTGAGGGTCCCTTCCAAAGAGGTGGAGGAGGAT
GGTGATACCTGTGAAGAAGAGGAAGAGGAAGCGGAAGAGGAAGAGGATCA
GGATGAGGAAATAGGGGAGTACATCCCGGAAGGGTAAGTAGACCAGGAGT
GATGGCGAGGGTGACTTATGAGAACTGATTTTGGTGGGGTTGGGGACAGC
TATGTTCAGGTAGAGTGCTATCCTACACTTATAGTAAACGTGATGAAGAT
CGGAATTAACTCAAGTGCTGTCCCCAAGAGATTGCACATGCACATACTTG
TGCCCTAACCCTAAGCACTTTGGTAAGGCAACAATTCTTCATAGCCAGGA
ACTCGTTTTAGTCATGCCATTCACAGCTATGAGTGACGAGCGCATGAGTA
TGCGTGGAAGTGTGAAGTAGAATTGCAGTTTTTAACTTTTGTAGGTGTCA
GCGTTTATGTAGTTCACAGGGTTGCATCAATAGACCAAGATGCACTCATA
AGATAGATCTGTTGTTACTATGTGGAGAAATTATAGATGATCCTGTGGAG
ACCCAAGCCTACGGAGGAGTCACAAACCTTGCACTGCTGTTGAGAATTGG
CAGGCCACCCCTGCTTCTTCTGTTCTTAACCAATACACGTTTCCACACTC
CGATATAAGTGCATAGAGGGAGTCAGTTCTGTATTGAGAGATTTGCCCTC
TTCCTACTACCATCTACTGTTAAGAGAAGGGACCTGAATTCCCTGATGGA
AAAACACACTTAATGAAACATCTAACTGGCTTGATTAGAGCTGGCGGGTA
GGTCAACTACAACTCTTTGGGTGCAAACTACCATTTCGATATTGAAGTCT
TCTTCTAAGACGATTTGAGTGGAATGTATTCATTTTGTTACTATTTTATT
ACTATTTATTACTATAGTATTCTGTCACTTGCACTCGAAGCAGGGTCTGA
CCGAAAGAGTCCTACTAAGTTAGACATTTGAACTGGATTTTGTGCCCCTA
CTGTAGTGATGTTGTACTCATGATCTTCCTCTACCCTGCCCTCCCCTCCC
CCCACACAACCCCCACGACCCGCCTTCCATTGTTCTCCCCCCGCTAACTT
CTACTTCTCGGCACATATCAATAAAAAAAAGATACGACTTTTGTGGCGAG
CGTTGGGCAGTGGTGAATAAGAAAAATAAAAGTTCTGGTTGTGGGGGAGG
GTTACGGCATTCCACCAAGGGGTCCTTGTCTTCGAATGGCCAATCGGGGA
CAGAAGGTCAAGGACATGGACATGGACTAGGGGATGAGGAGGGACAGGAA
CAGCGCATCTTGAAAGGCAAGGGGGGAGGGGCAAAGGAAGGAGGTCAGGG
GAACGGAGGCTTAGATTTGGGAAACTCTCAGGAGTACCGT
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Coding sequence (CDS) from alignment at C-tenellus_contig10675:421..2610-

>mRNA_C-tenellus_contig10675.1.1 ID=mRNA_C-tenellus_contig10675.1.1|Name=mRNA_C-tenellus_contig10675.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=738bp|location=Sequence derived from alignment at C-tenellus_contig10675:421..2610- (Choristocarpus tenellus KU2346)
ATGGAATCGAGCATGGTTGGGAAGGGAGAGGGATTCAGGGGATTGCTTCA
GCGACTAGAGCAGAGTAGTCAATATTCTGTGCTTGGTTGTGTGGATGGCC
AGGATCAGGGGGAAGGGGAGGAGTGGGGAGAATGTCGTTTGTTGCAAGGG
CAAGGACTTGGCCAACAAGGCTGTCGTGGGCAATCACAGACTCCTACCAC
CCTCGATCAATGGGGAACGGTTTTGGGTGAGGCCCTGGCTTATGATCCCG
AGGTGGCCCGTCTAGCATCTGTTTCAAAATATGGCCTGTCCACTAGCCTC
AGAAGAGGAAACAATGGGGATTGCGTTCACAACCCGCGACTGCTAGATTT
TGGGCGGGTCTTATTGAGGGTCCCTTCCAAAGAGGTGGAGGAGGATGGTG
ATACCTGTGAAGAAGAGGAAGAGGAAGCGGAAGAGGAAGAGGATCAGGAT
GAGGAAATAGGGGAGTACATCCCGGAAGGATACGACTTTTGTGGCGAGCG
TTGGGCAGTGGTGAATAAGAAAAATAAAAGTTCTGGTTGTGGGGGAGGGT
TACGGCATTCCACCAAGGGGTCCTTGTCTTCGAATGGCCAATCGGGGACA
GAAGGTCAAGGACATGGACATGGACTAGGGGATGAGGAGGGACAGGAACA
GCGCATCTTGAAAGGCAAGGGGGGAGGGGCAAAGGAAGGAGGTCAGGGGA
ACGGAGGCTTAGATTTGGGAAACTCTCAGGAGTACCGT
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