mRNA_C-tenellus_contig1063.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1063.2.1
Unique NamemRNA_C-tenellus_contig1063.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1063.2.1 vs. uniprot
Match: D7FUR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR4_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.600e-6
Identity = 33/51 (64.71%), Postives = 35/51 (68.63%), Query Frame = 2 
Query:  398 QAKATGKTSSGRMTYQESMAAEKNKQKDLK---MSNERRRATMCEELGRGC 541
            QAK  GKTSSG+MTY ES AAE  KQ+ LK       RRRA MCE LGRGC
Sbjct:   26 QAKLNGKTSSGQMTYGESRAAEGEKQQRLKDEANDKARRRAAMCENLGRGC 76
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BLAST of mRNA_C-tenellus_contig1063.2.1 vs. uniprot
Match: A0A6H5KYI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI3_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.820e-5
Identity = 32/51 (62.75%), Postives = 35/51 (68.63%), Query Frame = 2 
Query:  398 QAKATGKTSSGRMTYQESMAAEKNKQKDLK---MSNERRRATMCEELGRGC 541
            QAK  GK+SSG+MTY ES AAE  KQ+ LK       RRRA MCE LGRGC
Sbjct:  129 QAKLNGKSSSGQMTYGESRAAEGEKQQRLKDEANDKARRRAAMCENLGRGC 179
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1063.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUR4_ECTSI1.600e-664.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYI3_9PHAE4.820e-562.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1063contigC-tenellus_contig1063:8141..9580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1031
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_004220.1
Cds size249
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789141.6284-UTR-C-tenellus_contig1063:8140..84351680789141.6284-UTR-C-tenellus_contig1063:8140..8435Choristocarpus tenellus KU2346UTRC-tenellus_contig1063 8141..8435 +
1680789141.6542895-UTR-C-tenellus_contig1063:9093..95801680789141.6542895-UTR-C-tenellus_contig1063:9093..9580Choristocarpus tenellus KU2346UTRC-tenellus_contig1063 9094..9580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789141.6375093-CDS-C-tenellus_contig1063:8435..85851680789141.6375093-CDS-C-tenellus_contig1063:8435..8585Choristocarpus tenellus KU2346CDSC-tenellus_contig1063 8436..8585 +
1680789141.645874-CDS-C-tenellus_contig1063:8994..90931680789141.645874-CDS-C-tenellus_contig1063:8994..9093Choristocarpus tenellus KU2346CDSC-tenellus_contig1063 8995..9093 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1063.2.1prot_C-tenellus_contig1063.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1063 8436..9093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1063.2.1

>prot_C-tenellus_contig1063.2.1 ID=prot_C-tenellus_contig1063.2.1|Name=mRNA_C-tenellus_contig1063.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=83bp
MGGNMDNALSRPSGTPYSNRCFNAPVSLYDFFSTQAKATGKTSSGRMTYQ
ESMAAEKNKQKDLKMSNERRRATMCEELGRGC*
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mRNA from alignment at C-tenellus_contig1063:8141..9580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1063.2.1 ID=mRNA_C-tenellus_contig1063.2.1|Name=mRNA_C-tenellus_contig1063.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1440bp|location=Sequence derived from alignment at C-tenellus_contig1063:8141..9580+ (Choristocarpus tenellus KU2346)
CTGCGACTGATGCGCCTGTGGAGAAGTCATCGAAGACGGAGGACACGGAG
GAGGCTCGAATTAGGCGGAAGCTGGCTGCCCAGGTGTATTCAACGATATT
AACTGCCATGTGACGTTCAATTTGGTTCCTTCTTTAGACGCTCATGTCTG
AATGGAGATATCGGTCGATTAGCCACTGGGTGTAATACGATCGGGCTTGA
ATCGACTGCTTTGTGATACAGATACAAGCTCATGTATATGTCGACTTCCA
AGAGAGAGAACTTCGTCCACCTATGCTAGAAACACCGTTACATGCATGGG
TGGGAATATGGATAATGCCTTGTCTCGACCGTCAGGTACTCCGTACTCTA
ACCGATGCTTCAATGCCCCTGTCTCGTTGTATGATTTCTTCTCAACCCAG
GCCAAGGCGACAGGAAAGACGTCTTCTGGACGGATGACGTACCAGGTGAT
GCACAGCATTGGACCACCCTTTATTTGGTCTCCAAATTCCTTTCTATATA
CCTTGAGCAATTGATCACTGACCTTCATATCATAAGTGCGCACTGACAGG
GATGCTCTAAGGGTGTTTGGAGCATTCTCATGTGCAGAACCAGTCACCTT
TTTTAAAGCTTTCTGAGAGAAATGTTGGCATCACCAGAGGTAAAAATATA
ATCTGCCTGCCACAGTCCAAACAGGAAGCACAGAAATTTCTAGTAGACAA
CAAGGTGTACTGTGGCGAGCTGTCACCAAGCTGTAACCGCAATGACAGGC
TGGGGCATTGGAGCAGAGACCTCCTCCCCACCTGTCAACCTACATGAATC
CTCCCTGCAACAATTTAATCGAGCATGAATCAAATTCCTTGACGGCTGTA
CCAGGAATCCATGGCTGCAGAAAAAAACAAGCAGAAGGACCTAAAGATGT
CCAACGAGCGCAGGAGGGCAACTATGTGTGAGGAGCTTGGGCGGGGATGC
TGAGTTGCAGATGTTTATTTTGAATTTTTTTTATCAGCCAACAACTGAGA
TAGGTCCACAGCAGGTGTTGAGTGCTAGAGTGAAAGATTCCTTTTGGAAT
TAAAGAATTTAGCATGCATTTAGCATCTATGCCTGTAGGTGAGGTACACT
GTTCACATGGCACCGTTGTTTCGGAGTCAGATTACAGAGAATGTCGTATT
GTCCATGAGTCTTGCAGTTGATAGGGCCTTTATTCCTCTGTTGATAGGGT
TATCCGCACCATTCAAGGTAATTTGAAGTTGCTGCTGCTGAATAACATTG
TCCAGTTCTTTTCAGCATGTACAAAGCATATGTGTCAGGGGAAAAGCTCT
GTTCCTGCTATGATCTTCTTGCAAGTACAAGTTTGATCAGAAGGGCGACA
TGATAGTGAGATACCTAAAAGCTCACTGCACCAAAAAATAGTTTTGACCA
TGATAACCACTATGGTGAATGTTCAAGGATATCTATCTAC
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Coding sequence (CDS) from alignment at C-tenellus_contig1063:8141..9580+

>mRNA_C-tenellus_contig1063.2.1 ID=mRNA_C-tenellus_contig1063.2.1|Name=mRNA_C-tenellus_contig1063.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=249bp|location=Sequence derived from alignment at C-tenellus_contig1063:8141..9580+ (Choristocarpus tenellus KU2346)
ATGGGTGGGAATATGGATAATGCCTTGTCTCGACCGTCAGGTACTCCGTA
CTCTAACCGATGCTTCAATGCCCCTGTCTCGTTGTATGATTTCTTCTCAA
CCCAGGCCAAGGCGACAGGAAAGACGTCTTCTGGACGGATGACGTACCAG
GAATCCATGGCTGCAGAAAAAAACAAGCAGAAGGACCTAAAGATGTCCAA
CGAGCGCAGGAGGGCAACTATGTGTGAGGAGCTTGGGCGGGGATGCTGA
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