mRNA_C-tenellus_contig10571.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10571.4.1
Unique NamemRNA_C-tenellus_contig10571.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10571.4.1 vs. uniprot
Match: D8LL20_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL20_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.960e-20
Identity = 64/162 (39.51%), Postives = 84/162 (51.85%), Query Frame = 1 
Query:    4 SPMLPPDIKITGIEFSPGGDFLLVWGEHYIGVACLP----SLGACRHRSSAAAATAAVS---------RRR--QGGEG--------FLW---DMSGYAVDKKQGRVMQASWNPLSDECLTILTVTDG----RRSGQGAGASIMLHIPGRAMPEKVWSFPLGP 399
            S  +PP   I G++FSP G  LL+WGE Y+ VA LP    + G          AT  +S         RRR   GG+G        + W   DMSGYAVD  + R++ A+W+P SD C+T+LT          +G GA A +MLH+PGR  PE+V   P GP
Sbjct:  111 SDSIPPKTPIKGLQFSPSGHSLLIWGESYVAVARLPRSARTTGGSNPTHGVPPATPFLSPPRDLTASGRRRGTAGGDGTSGDKSARWKWTLVDMSGYAVDVMRQRIVHAAWHPASDGCVTLLTAGKDDVYVAVAGVGAKAFVMLHVPGRERPEQVLPIPDGP 272
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10571.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL20_ECTSI1.960e-2039.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10571contigC-tenellus_contig10571:4727..5146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789138.44525-CDS-C-tenellus_contig10571:4726..51461680789138.44525-CDS-C-tenellus_contig10571:4726..5146Choristocarpus tenellus KU2346CDSC-tenellus_contig10571 4727..5146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10571.4.1prot_C-tenellus_contig10571.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10571 4727..5146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10571.4.1

>prot_C-tenellus_contig10571.4.1 ID=prot_C-tenellus_contig10571.4.1|Name=mRNA_C-tenellus_contig10571.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=140bp
MSPMLPPDIKITGIEFSPGGDFLLVWGEHYIGVACLPSLGACRHRSSAAA
ATAAVSRRRQGGEGFLWDMSGYAVDKKQGRVMQASWNPLSDECLTILTVT
DGRRSGQGAGASIMLHIPGRAMPEKVWSFPLGPLGLEMR*
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mRNA from alignment at C-tenellus_contig10571:4727..5146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10571.4.1 ID=mRNA_C-tenellus_contig10571.4.1|Name=mRNA_C-tenellus_contig10571.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=420bp|location=Sequence derived from alignment at C-tenellus_contig10571:4727..5146+ (Choristocarpus tenellus KU2346)
ATGAGCCCTATGCTGCCGCCAGACATCAAGATTACAGGCATAGAGTTTTC
CCCTGGTGGCGACTTCCTTCTCGTATGGGGAGAACATTACATAGGTGTGG
CGTGCCTCCCCAGTCTTGGAGCGTGTCGCCACCGCTCATCTGCTGCCGCT
GCCACAGCTGCTGTTTCGAGACGCCGTCAAGGTGGTGAAGGTTTCCTGTG
GGACATGTCAGGATATGCTGTCGATAAGAAGCAGGGACGAGTGATGCAGG
CGTCCTGGAATCCGCTCAGTGATGAGTGCCTAACGATACTCACAGTGACG
GATGGCAGAAGGAGTGGTCAGGGCGCAGGGGCATCCATCATGCTCCACAT
ACCTGGGCGAGCTATGCCAGAGAAGGTTTGGTCTTTCCCATTAGGACCTC
TTGGTCTGGAAATGCGATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10571:4727..5146+

>mRNA_C-tenellus_contig10571.4.1 ID=mRNA_C-tenellus_contig10571.4.1|Name=mRNA_C-tenellus_contig10571.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=420bp|location=Sequence derived from alignment at C-tenellus_contig10571:4727..5146+ (Choristocarpus tenellus KU2346)
ATGAGCCCTATGCTGCCGCCAGACATCAAGATTACAGGCATAGAGTTTTC
CCCTGGTGGCGACTTCCTTCTCGTATGGGGAGAACATTACATAGGTGTGG
CGTGCCTCCCCAGTCTTGGAGCGTGTCGCCACCGCTCATCTGCTGCCGCT
GCCACAGCTGCTGTTTCGAGACGCCGTCAAGGTGGTGAAGGTTTCCTGTG
GGACATGTCAGGATATGCTGTCGATAAGAAGCAGGGACGAGTGATGCAGG
CGTCCTGGAATCCGCTCAGTGATGAGTGCCTAACGATACTCACAGTGACG
GATGGCAGAAGGAGTGGTCAGGGCGCAGGGGCATCCATCATGCTCCACAT
ACCTGGGCGAGCTATGCCAGAGAAGGTTTGGTCTTTCCCATTAGGACCTC
TTGGTCTGGAAATGCGATGA
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