mRNA_C-tenellus_contig10552.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10552.2.1
Unique NamemRNA_C-tenellus_contig10552.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10552.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10552contigC-tenellus_contig10552:3224..3855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size632
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789137.230414-UTR-C-tenellus_contig10552:3223..32821680789137.230414-UTR-C-tenellus_contig10552:3223..3282Choristocarpus tenellus KU2346UTRC-tenellus_contig10552 3224..3282 -
1680789137.259609-UTR-C-tenellus_contig10552:3639..38551680789137.259609-UTR-C-tenellus_contig10552:3639..3855Choristocarpus tenellus KU2346UTRC-tenellus_contig10552 3640..3855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789137.243786-CDS-C-tenellus_contig10552:3282..36391680789137.243786-CDS-C-tenellus_contig10552:3282..3639Choristocarpus tenellus KU2346CDSC-tenellus_contig10552 3283..3639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10552.2.1prot_C-tenellus_contig10552.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10552 3283..3639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10552.2.1

>prot_C-tenellus_contig10552.2.1 ID=prot_C-tenellus_contig10552.2.1|Name=mRNA_C-tenellus_contig10552.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=119bp
MFLLQHGAAQHSHNPHGILSPAQSPLSRGKNLKLKEEVHLLCMMHWLFLQ
VMSSSRWVWGKLVKAFGVGERHPRRVWVRIKEQFDRGKEYCLPEITSMIW
TAIRFSGNQTSEDLGNQH*
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mRNA from alignment at C-tenellus_contig10552:3224..3855-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10552.2.1 ID=mRNA_C-tenellus_contig10552.2.1|Name=mRNA_C-tenellus_contig10552.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=632bp|location=Sequence derived from alignment at C-tenellus_contig10552:3224..3855- (Choristocarpus tenellus KU2346)
CTGAACTGTAGCACGGAATACTTCCTCCGTCCCATAGGTCTGGGCCGTTA
TGATTTACCTCTTTGGGATGACCTACTACAAAACGGAATTTTGCGTTGGA
TTCCTTTAAATATTTACAGTAATACACTAAATTTCAAAGGATTCTACAAT
GAATTCTGTTCTGAAGTGGTTCCAAAAGAATGGAACACAGAATAGGACAT
ATTTTGTCATTTTTGAATGTTCCTGCTGCAGCATGGAGCCGCACAACACT
CCCACAACCCCCATGGCATATTGTCCCCGGCACAAAGCCCACTGTCCCGG
GGAAAGAACTTGAAGCTGAAGGAGGAAGTACACTTGCTCTGCATGATGCA
TTGGCTCTTCCTCCAGGTCATGAGCAGCTCCCGGTGGGTGTGGGGTAAAT
TGGTGAAAGCGTTTGGAGTGGGAGAAAGGCACCCTAGACGGGTGTGGGTG
CGCATCAAAGAACAGTTTGATAGGGGGAAGGAATACTGTCTCCCTGAGAT
CACAAGCATGATCTGGACGGCCATCAGATTTTCGGGCAACCAAACAAGCG
AAGATCTGGGAAATCAACACTAGCAATCACATGCTGACCATTGACTATCT
ACCCACCAAACTTGCTGAAGCAGGCCATGAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10552:3224..3855-

>mRNA_C-tenellus_contig10552.2.1 ID=mRNA_C-tenellus_contig10552.2.1|Name=mRNA_C-tenellus_contig10552.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=357bp|location=Sequence derived from alignment at C-tenellus_contig10552:3224..3855- (Choristocarpus tenellus KU2346)
ATGTTCCTGCTGCAGCATGGAGCCGCACAACACTCCCACAACCCCCATGG
CATATTGTCCCCGGCACAAAGCCCACTGTCCCGGGGAAAGAACTTGAAGC
TGAAGGAGGAAGTACACTTGCTCTGCATGATGCATTGGCTCTTCCTCCAG
GTCATGAGCAGCTCCCGGTGGGTGTGGGGTAAATTGGTGAAAGCGTTTGG
AGTGGGAGAAAGGCACCCTAGACGGGTGTGGGTGCGCATCAAAGAACAGT
TTGATAGGGGGAAGGAATACTGTCTCCCTGAGATCACAAGCATGATCTGG
ACGGCCATCAGATTTTCGGGCAACCAAACAAGCGAAGATCTGGGAAATCA
ACACTAG
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