mRNA_C-tenellus_contig10548.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10548.1.1
Unique NamemRNA_C-tenellus_contig10548.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10548.1.1 vs. uniprot
Match: D7FIZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIZ8_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.570e-12
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 SDSLWVLDRCVKSVLCGRRERKSAEERWIARLADTCANYEAKIKVM 138
            SD LW LDRCV SVL GRRERK AEE W  +L  TCA+YEAKIK +
Sbjct:  391 SDCLWTLDRCVASVLEGRRERKQAEEDWTKKLEKTCADYEAKIKAI 436
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BLAST of mRNA_C-tenellus_contig10548.1.1 vs. uniprot
Match: A0A6H5KYI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.570e-12
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 SDSLWVLDRCVKSVLCGRRERKSAEERWIARLADTCANYEAKIKVM 138
            SD LW LDRCV SVL GRRERK AEE W  +L  TCA+YEAKIK +
Sbjct:  390 SDCLWTLDRCVASVLEGRRERKQAEEDWTKKLEKTCADYEAKIKAI 435
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10548.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIZ8_ECTSI2.570e-1269.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYI7_9PHAE2.570e-1269.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10548contigC-tenellus_contig10548:1693..1830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIZ8
Model size138
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.22e-13
EggNOG OGs2CMZH@1|root,2QSXT@2759|Eukaryota
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789137.0075471-CDS-C-tenellus_contig10548:1692..18301680789137.0075471-CDS-C-tenellus_contig10548:1692..1830Choristocarpus tenellus KU2346CDSC-tenellus_contig10548 1693..1830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10548.1.1prot_C-tenellus_contig10548.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10548 1693..1830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10548.1.1

>prot_C-tenellus_contig10548.1.1 ID=prot_C-tenellus_contig10548.1.1|Name=mRNA_C-tenellus_contig10548.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=46bp
SDSLWVLDRCVKSVLCGRRERKSAEERWIARLADTCANYEAKIKVM
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mRNA from alignment at C-tenellus_contig10548:1693..1830+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10548.1.1 ID=mRNA_C-tenellus_contig10548.1.1|Name=mRNA_C-tenellus_contig10548.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=138bp|location=Sequence derived from alignment at C-tenellus_contig10548:1693..1830+ (Choristocarpus tenellus KU2346)
AGCGACAGCCTATGGGTGCTGGATCGTTGTGTGAAGAGTGTGCTGTGTGG
GAGGAGAGAGAGGAAATCAGCTGAGGAAAGATGGATAGCCAGGCTGGCAG
ACACCTGTGCCAACTATGAGGCCAAGATCAAGGTAATG
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Coding sequence (CDS) from alignment at C-tenellus_contig10548:1693..1830+

>mRNA_C-tenellus_contig10548.1.1 ID=mRNA_C-tenellus_contig10548.1.1|Name=mRNA_C-tenellus_contig10548.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=138bp|location=Sequence derived from alignment at C-tenellus_contig10548:1693..1830+ (Choristocarpus tenellus KU2346)
AGCGACAGCCTATGGGTGCTGGATCGTTGTGTGAAGAGTGTGCTGTGTGG
GAGGAGAGAGAGGAAATCAGCTGAGGAAAGATGGATAGCCAGGCTGGCAG
ACACCTGTGCCAACTATGAGGCCAAGATCAAGGTAATG
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