mRNA_C-tenellus_contig10513.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10513.1.1
Unique NamemRNA_C-tenellus_contig10513.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10513.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10513contigC-tenellus_contig10513:1005..3236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2082
Hectar predicted targeting categoryother localisation
Exons2
Cds size1224
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789135.7914076-UTR-C-tenellus_contig10513:1004..12981680789135.7914076-UTR-C-tenellus_contig10513:1004..1298Choristocarpus tenellus KU2346UTRC-tenellus_contig10513 1005..1298 -
1680789135.8008564-UTR-C-tenellus_contig10513:1448..18001680789135.8008564-UTR-C-tenellus_contig10513:1448..1800Choristocarpus tenellus KU2346UTRC-tenellus_contig10513 1449..1800 -
1680789135.8217967-UTR-C-tenellus_contig10513:3024..32361680789135.8217967-UTR-C-tenellus_contig10513:3024..3236Choristocarpus tenellus KU2346UTRC-tenellus_contig10513 3025..3236 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789135.8109202-CDS-C-tenellus_contig10513:1800..30241680789135.8109202-CDS-C-tenellus_contig10513:1800..3024Choristocarpus tenellus KU2346CDSC-tenellus_contig10513 1801..3024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10513.1.1prot_C-tenellus_contig10513.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10513 1801..3024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10513.1.1

>prot_C-tenellus_contig10513.1.1 ID=prot_C-tenellus_contig10513.1.1|Name=mRNA_C-tenellus_contig10513.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=408bp
MSQTHTVLSIVRNSGWLRLTDIKELQRVDMGLCVGCREVVGFHVRVTKEM
PSLLFEAMIHERGTDGSGVSCVPLLRPQTMTWEIEGLTFKGIDNQTINYE
ETKGTLQERTNTVVCPLSKISQPLDGMVWPASLHELTFGDDFNVAVDDIL
WPNSLQRLTFGGGFNRGVDRVQWPPGLLQLTFGASFDQALEGVEWPEGLE
ALEFGRKFDQPIVAVVWPTRLKKLTFGAAFNQAVNGLVLPSGLQQLTFGK
LFNQDVERVKWPAGLRQLTFGAFFNKELERVLWPRGLESLSFGVYFRKEV
EGVMWPEGLRELTFGFFFDQPVERVAWPAGLQQITFGRCFNQAVAGVSWP
TGLEQLTFGRNFNQPVGGVVWPGRLQRLKFGVLFDQSLEGMVKPAGLHVA
YPKFTKQ*
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mRNA from alignment at C-tenellus_contig10513:1005..3236-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10513.1.1 ID=mRNA_C-tenellus_contig10513.1.1|Name=mRNA_C-tenellus_contig10513.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2232bp|location=Sequence derived from alignment at C-tenellus_contig10513:1005..3236- (Choristocarpus tenellus KU2346)
CAACACCCATAAACTACAACAACCACCAAAATGTCGAGACCATACACAGT
AATGACAAAATAATACCTATATCTCTTACTTTCAAGAACTAGGTAATACT
CCATTGTACGAAACATCCACTTCAGTTCCAACACCTCCGAGTCCGCACCG
TCAGCTGACATTTACACCTTCGAATCTAGGAAGACTCCACAATTGCGCTG
CTCCAACTAGGAATGAGCCAAACCCATACCGTACTTTCAATAGTGCGTAA
CTCAGGGTGGCTGCGGCTAACAGACATCAAAGAGCTCCAACGAGTAGACA
TGGGGTTGTGCGTGGGATGTCGGGAAGTGGTCGGATTCCATGTACGGGTC
ACAAAGGAGATGCCTAGCCTTCTCTTCGAGGCCATGATCCATGAGAGAGG
GACCGATGGGAGCGGTGTATCATGTGTACCACTTCTCCGTCCTCAAACAA
TGACCTGGGAAATTGAGGGTCTAACATTCAAGGGGATCGACAACCAAACC
ATAAACTATGAGGAGACTAAGGGGACCCTTCAAGAACGCACCAATACTGT
GGTTTGTCCACTAAGCAAAATTAGTCAGCCTCTTGATGGGATGGTGTGGC
CAGCAAGCCTTCACGAGTTGACTTTCGGAGATGACTTCAACGTTGCGGTG
GATGATATCCTGTGGCCAAACAGTCTCCAACGCCTGACCTTCGGAGGAGG
CTTCAATCGAGGGGTAGACAGAGTGCAATGGCCACCAGGCCTCCTCCAGC
TCACCTTCGGTGCCTCCTTTGATCAGGCGTTGGAAGGGGTGGAATGGCCC
GAAGGACTTGAAGCGCTGGAGTTTGGGAGGAAATTTGACCAGCCAATTGT
AGCGGTTGTTTGGCCTACCCGCCTCAAGAAGCTGACGTTCGGAGCAGCCT
TTAATCAGGCGGTCAATGGACTGGTACTACCTTCGGGCCTTCAGCAGCTA
ACGTTCGGAAAACTCTTTAACCAGGATGTGGAGAGGGTGAAGTGGCCAGC
AGGGCTTAGGCAACTAACATTTGGGGCGTTCTTTAACAAGGAGTTGGAAA
GGGTATTGTGGCCAAGAGGGCTAGAGAGCCTATCCTTCGGGGTGTATTTT
AGGAAGGAGGTAGAGGGGGTGATGTGGCCAGAGGGACTCCGGGAGCTAAC
GTTTGGATTTTTCTTCGATCAGCCTGTGGAAAGGGTAGCATGGCCGGCAG
GACTCCAGCAGATTACGTTTGGGAGGTGCTTCAATCAAGCTGTGGCTGGA
GTGTCTTGGCCGACAGGGCTCGAGCAGCTAACGTTTGGAAGAAACTTCAA
CCAGCCGGTGGGAGGGGTGGTATGGCCGGGACGGCTACAGCGACTGAAGT
TTGGGGTTTTGTTTGACCAGTCACTCGAAGGGATGGTCAAACCAGCAGGA
CTCCACGTAGCATATCCCAAGTTCACCAAGCAGTAGTTCGACGATATGGA
GTCTATTTGCTGCAGGACAGATGCGTGATGGTCCGGAGTTAGGTACGTAA
TTGGAGTGAACAGCAACCAATGTTGGTTTGTCCACCTTTCTTCGTTGTTT
GAAAAGTGTTTGGTGTTGATAAAATGTGTCGATGCCGATGGGCATGGGTG
CGCATCTCGTTCGCTATGGTACGAAGCTGAGCCCGCCTTGAAGAGGACGA
TACTGCCATCATCTTTCTAGAAATCCCTGGTCAAGTTGGTTGTCCTTGGA
TCCTGTTGCAGTATTACTCAGGATGGTAGAAAGGGTTATATTACATGGTT
GAGCGCACTATTTTTAAAAAAGATGTGTATTGGATAGTGTGTGGTAAGAA
TTCATTATTGTGCATAATTGGAGGTAGATTTTTTTTTTTTTCTTGTCATC
ACTAACGTCATAGAACGAGTGAACTTGAGCCATGCGTTGTCTTGTTTTTC
CAAGTAGGTCAGGCAGTAGAGTGTGATTGCCTTGTAAGTTGGGGTTGGAT
TGTTTGTTTCTCCAAAGAACTCATACTGTTTCTCAGTCCATTTATTATTA
TTCTTTGTATATATGGTCTCAGGTACTTACCCGAGCCCCTTCCTCTTACT
CATTACGGTGGAGAGAACCTGACTGAAGTCAGCAGATAGTCTTCTACCGT
ACGTGTTATAGTACTTCCAGTGATTAGTGTTTATTGTCCGCCACATTCTT
AGTTATGACTACTACTTGGATTTTGCTGTTAATACATTTCGTTTGTTCAT
AGTCCCTCTCTTTGCACTGGTTTGCAAGTTGC
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Coding sequence (CDS) from alignment at C-tenellus_contig10513:1005..3236-

>mRNA_C-tenellus_contig10513.1.1 ID=mRNA_C-tenellus_contig10513.1.1|Name=mRNA_C-tenellus_contig10513.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1224bp|location=Sequence derived from alignment at C-tenellus_contig10513:1005..3236- (Choristocarpus tenellus KU2346)
ATGAGCCAAACCCATACCGTACTTTCAATAGTGCGTAACTCAGGGTGGCT
GCGGCTAACAGACATCAAAGAGCTCCAACGAGTAGACATGGGGTTGTGCG
TGGGATGTCGGGAAGTGGTCGGATTCCATGTACGGGTCACAAAGGAGATG
CCTAGCCTTCTCTTCGAGGCCATGATCCATGAGAGAGGGACCGATGGGAG
CGGTGTATCATGTGTACCACTTCTCCGTCCTCAAACAATGACCTGGGAAA
TTGAGGGTCTAACATTCAAGGGGATCGACAACCAAACCATAAACTATGAG
GAGACTAAGGGGACCCTTCAAGAACGCACCAATACTGTGGTTTGTCCACT
AAGCAAAATTAGTCAGCCTCTTGATGGGATGGTGTGGCCAGCAAGCCTTC
ACGAGTTGACTTTCGGAGATGACTTCAACGTTGCGGTGGATGATATCCTG
TGGCCAAACAGTCTCCAACGCCTGACCTTCGGAGGAGGCTTCAATCGAGG
GGTAGACAGAGTGCAATGGCCACCAGGCCTCCTCCAGCTCACCTTCGGTG
CCTCCTTTGATCAGGCGTTGGAAGGGGTGGAATGGCCCGAAGGACTTGAA
GCGCTGGAGTTTGGGAGGAAATTTGACCAGCCAATTGTAGCGGTTGTTTG
GCCTACCCGCCTCAAGAAGCTGACGTTCGGAGCAGCCTTTAATCAGGCGG
TCAATGGACTGGTACTACCTTCGGGCCTTCAGCAGCTAACGTTCGGAAAA
CTCTTTAACCAGGATGTGGAGAGGGTGAAGTGGCCAGCAGGGCTTAGGCA
ACTAACATTTGGGGCGTTCTTTAACAAGGAGTTGGAAAGGGTATTGTGGC
CAAGAGGGCTAGAGAGCCTATCCTTCGGGGTGTATTTTAGGAAGGAGGTA
GAGGGGGTGATGTGGCCAGAGGGACTCCGGGAGCTAACGTTTGGATTTTT
CTTCGATCAGCCTGTGGAAAGGGTAGCATGGCCGGCAGGACTCCAGCAGA
TTACGTTTGGGAGGTGCTTCAATCAAGCTGTGGCTGGAGTGTCTTGGCCG
ACAGGGCTCGAGCAGCTAACGTTTGGAAGAAACTTCAACCAGCCGGTGGG
AGGGGTGGTATGGCCGGGACGGCTACAGCGACTGAAGTTTGGGGTTTTGT
TTGACCAGTCACTCGAAGGGATGGTCAAACCAGCAGGACTCCACGTAGCA
TATCCCAAGTTCACCAAGCAGTAG
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