mRNA_C-tenellus_contig10477.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10477.1.1
Unique NamemRNA_C-tenellus_contig10477.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10477.1.1 vs. uniprot
Match: D7G633_ECTSI (WD40 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G633_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.820e-31
Identity = 70/175 (40.00%), Postives = 104/175 (59.43%), Query Frame = 1 
Query:    1 MSEPVEAKGHSGEVIAVEYIPT-LQLLVTSGAKEGCLRCWEIHSIQELQII---PNRRQGNASEPQVMLKWLSEGRAVSIRGPKPNAQGSGCQRDDQG-----FSNRLISGGASGGINIWEVSGNGLHITHHLTGHTDAVTAACIIPQPDIVVSGGMDADLRVWETSTRQCKRVL 498
            +S    + GHSG+V+A+ ++     +LVTSG K+  LRCW++    +L  +     +RQ  A EPQVMLKWL   R+  +  P+          D +G      S  L+SGGA G +NIW+++   L I + L GHT AVT+AC++P P++ V+G +DAD+RVW T T + KRV+
Sbjct:   21 LSSSPASMGHSGQVLAMAFVAAPFNVLVTSGEKDRMLRCWDMILKPKLDAVVGPAGKRQAKACEPQVMLKWLRSLRSGGVDPPRSXXXXXXXXXDSKGNGAADVSAILVSGGAGGTVNIWQLTAKHLEILNTLPGHTGAVTSACVLPHPEVFVTGSLDADIRVWATKTYKFKRVM 195
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BLAST of mRNA_C-tenellus_contig10477.1.1 vs. uniprot
Match: A0A6H5KFW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW1_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.330e-18
Identity = 49/117 (41.88%), Postives = 71/117 (60.68%), Query Frame = 1 
Query:  157 RRQGNASEPQVMLKWLSEGRAVSIRGPKPNAQGSGCQRDDQG-----FSNRLISGGASGGINIWEVSGNGLHITHHLTGHTDAVTAACIIPQPDIVVSGGMDADLRVWETSTRQCKR 492
            +RQ  A EPQVMLKWL    +  +  P+ +  GS    D +G      S  L+SGGA G +NIW+++   L I + L GHT AVT+AC++P P++ V+G +DAD+RV   + R  +R
Sbjct:   16 KRQAKACEPQVMLKWLRSPPSGGVDPPRGSGGGSXXXXDSKGNGAADVSAILVSGGAGGTVNIWQLTAKHLDILNTLPGHTGAVTSACVLPHPEVFVTGSLDADIRVTYKAVRYWRR 132
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BLAST of mRNA_C-tenellus_contig10477.1.1 vs. uniprot
Match: A0A2E7QLM1_9BACT (GYF_2 domain-containing protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E7QLM1_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 9.200e-7
Identity = 42/162 (25.93%), Postives = 68/162 (41.98%), Query Frame = 1 
Query:   25 GHSGEVIAVEYIPTLQLLVTSGAKEGCLRCWEIHS------------IQELQIIPNRRQGNASEPQVMLKWLSEGRAVSIRGPKPNAQGSGCQRDDQGFSNRLISGGASGGINIWEVSGNGLHITHHLTGHTDAVTAACIIPQPDIVVSGGMDADLRVWETS 474
            GH+  + ++ + P  Q LV SG   G L  W   S            I+++          A   Q M  W    + +S +  KP    S    + +   N    G   G + +W+  G+ L+      GHT+AVTA    P  +++++GG D  +RVW+ S
Sbjct:  148 GHTNTITSLSFSPNGQFLV-SGDAGGGLFVWNAESGAEIFNSGQKGAIKQVFFAGQNPAFFALSDQQMALWNVPQKKISSQAQKPPTGFSAAALNPRQPGNFFAIGAPDGRMEVWDTKGSKLYTQR---GHTNAVTALTFAPNGEVIITGGQDRQVRVWQAS 305
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10477.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G633_ECTSI1.820e-3140.00WD40 domain containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KFW1_9PHAE1.330e-1841.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2E7QLM1_9BACT9.200e-725.93GYF_2 domain-containing protein n=1 Tax=Verrucomic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10477contigC-tenellus_contig10477:216..4667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G633
Preferred nameWDR49
PFAMsNACHT,WD40
Model size774
Max annot lvl2759|Eukaryota
KEGG koko:K12811
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
Exons8
Evalue2.98e-32
EggNOG OGsKOG0267@1|root,KOG0267@2759|Eukaryota
EC3.6.4.13
Descriptionmicrotubule severing
Cds size774
COG categoryE
BRITEko00000,ko00001,ko01000,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10477.1.1prot_C-tenellus_contig10477.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10477 216..4667 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789133.5804248-CDS-C-tenellus_contig10477:215..2781680789133.5804248-CDS-C-tenellus_contig10477:215..278Choristocarpus tenellus KU2346CDSC-tenellus_contig10477 216..278 -
1680789133.6232438-CDS-C-tenellus_contig10477:661..7631680789133.6232438-CDS-C-tenellus_contig10477:661..763Choristocarpus tenellus KU2346CDSC-tenellus_contig10477 662..763 -
1680789133.636923-CDS-C-tenellus_contig10477:1187..13131680789133.636923-CDS-C-tenellus_contig10477:1187..1313Choristocarpus tenellus KU2346CDSC-tenellus_contig10477 1188..1313 -
1680789133.648366-CDS-C-tenellus_contig10477:1960..21071680789133.648366-CDS-C-tenellus_contig10477:1960..2107Choristocarpus tenellus KU2346CDSC-tenellus_contig10477 1961..2107 -
1680789133.6613955-CDS-C-tenellus_contig10477:2878..29671680789133.6613955-CDS-C-tenellus_contig10477:2878..2967Choristocarpus tenellus KU2346CDSC-tenellus_contig10477 2879..2967 -
1680789133.6757383-CDS-C-tenellus_contig10477:3566..36051680789133.6757383-CDS-C-tenellus_contig10477:3566..3605Choristocarpus tenellus KU2346CDSC-tenellus_contig10477 3567..3605 -
1680789133.691994-CDS-C-tenellus_contig10477:3672..37701680789133.691994-CDS-C-tenellus_contig10477:3672..3770Choristocarpus tenellus KU2346CDSC-tenellus_contig10477 3673..3770 -
1680789133.71154-CDS-C-tenellus_contig10477:4557..46671680789133.71154-CDS-C-tenellus_contig10477:4557..4667Choristocarpus tenellus KU2346CDSC-tenellus_contig10477 4558..4667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10477.1.1

>prot_C-tenellus_contig10477.1.1 ID=prot_C-tenellus_contig10477.1.1|Name=mRNA_C-tenellus_contig10477.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=258bp
MSEPVEAKGHSGEVIAVEYIPTLQLLVTSGAKEGCLRCWEIHSIQELQII
PNRRQGNASEPQVMLKWLSEGRAVSIRGPKPNAQGSGCQRDDQGFSNRLI
SGGASGGINIWEVSGNGLHITHHLTGHTDAVTAACIIPQPDIVVSGGMDA
DLRVWETSTRQCKRVLKGHSKGVSDIDYSPSQRIIVSAGFDHDILVWSPV
VGQVICQLTGHTCSLVGIGVSQVLSEMVSMSVDGVIKVWDTSNFKCVQTL
HAAQVET*
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mRNA from alignment at C-tenellus_contig10477:216..4667-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10477.1.1 ID=mRNA_C-tenellus_contig10477.1.1|Name=mRNA_C-tenellus_contig10477.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4452bp|location=Sequence derived from alignment at C-tenellus_contig10477:216..4667- (Choristocarpus tenellus KU2346)
ATGTCCGAGCCTGTGGAAGCAAAAGGCCATTCTGGAGAGGTCATTGCTGT
GGAATACATACCTACACTTCAATTGCTTGTCACCTCAGGGGCAAAGGAAG
GATGTCTCAGGTGAGGGTGCTGTTATAGCTACTGAGTGGGAGGACATTTA
GAACAACCCCCTGCCCTACTTGTATGGTACCTACTGTATGGTAGATTTGA
GGGAAAAGTTGCAAACAAATTGTGACAATTCAATGCATTTTGAAACTGAA
GAGTAGGCGAACAGGGATTATTCAGAATGTAGATCATAGGGTGTGCAGGA
TTGATCGAATTGGACCAAGTCCCATCACTTCAATATCAACCCCGCAATGA
ACATTAAATCATTGGAACAATCCGGCGTACCAGTACTACTTATCTCTGGA
GTGCTGCATAGTAGAAAATTTGCAAATGAAGTCAACCAGACTGTAGCACT
TAGGTCAGCAATGGTGGGGGGAAAGGTGGTTGGTTTCACTGTTTGGCAAT
CGCCAGTGGATCCTCCTAGATGATGTGCTGTGCTGAAGGACCTAGATTTG
AAATACGTTCAAATATCAACACAGATACATTATTCAGTAGTGTTGAACTT
CTATTGAGAATGTTCGAGCTCAAGGCCCTCACATCCCAATTTGAACTTGA
CGTTACCATGGAGTAATACTTCCCCGGCAATGGTGTCTATTGCCAAGATA
CGGTAATTTCCATCCATTGTCAATGAAACCGGAAGAATGGACCCTCATTG
CAAGGTATGGCAGACTTCATATAATACGCTGTATCCCATACAAAATAGGA
CCAAACCTTTGCTTCGACTATACTCTTGCAATCATTTCAGTCTGCCCTAG
AAAATACTCAATCAGAGGGATAACTGATCTAAGCTGCTGTCTACCAGATG
CTGGGAAATCCACTCTATACAAGAACTTCAGATCATTCCAAATCGGAGGC
AAGGCAATGCCAGCGAGCCACAAGTCATGCTCAAGTGGTTGTCAGGTCCA
GGTACATACGTTTCTAAGGATTACTGCTTACATTTCTTGATGCCTGAACC
AAAGTATCATAGAGGGTAGAGCTGTGTCGATTCGGGGTCCAAAACCCAAT
GGTGCAATTTCAATGTGATTTTGGCTATCGTGTTTGTTAGGAAGTGTCAA
TATCCTTGTTCCAGACACACCTTTTCAAACGCATAACGCATACATTTTAC
CTACTCCGAATATTTTGGAGTAGAAAAATGCCATAAAAACCTCGATGGAA
GCCAAGTCCCAAATAGACGAACAGGGCAAAACTCGTACCCTAACCCTAAT
ATACTTTTACTCGCCTACTCCACACCATTTTCTGCTCCCTCGAAATCCAG
TGGATCTCATAGAAAACGTTAAAAAAAAATTCAACTATGTTGGGGGTATT
TGGGGTGAATCAGAGATAGGCACACAATTGAGGTTTGGGCCTTGCGATTG
AGTAACCCTTCCAGAATAATGTAGCACAACAGTGCAAGGTCTTGATGCAC
CAATCAGGGGTTGTATAACTCTCTGGCGGATTATGTCAACACTACAGAAG
ATAATAGTAGGTCAGGAGTTGTAACCACATAATCAAGTTGCATGCATTTT
GTCTTCTTCTTTCAAACATAGCCCTCCTCAAATCCTTGCATTCGTACCTA
TGTCTACATCTAACTGCCGATCTCCTTTTGTCTTGGGAAATGCTGTGAAG
CCCAAGGGTCAGGATGCCAGAGGGATGACCAGGGCTTCTCCAACCGGCTC
ATATCTGGTGGGGCTTCTGGGGGAATCAATATATGGGAGGTGACTATCGT
GAGCAGTCTTAGCTTCACCCTGGATCCTTGCTGGAAGCCACAACTGAATA
TGATGTTGCTATGCTTTGGGTAAAGTATTGCCAAGATTGGGAGGACAGGG
GTGCTTGCAGAGCAAACACTTTCTTATTGACCCAATGTGACATAAAGGCT
ATTCCATTGGTGTAGTTGTGACTCTGAGGATCATCTACCTAACCATATGT
CGATTTCAGAATGACCCAAAGCATCTAAGAGGGTAGGGCTGCATCCATTC
AAGGACATATATCCACTGTTGCAATTTTGATCAATTTTGGCTATCGAGTT
TTTCAGCTAGTGTCAATATCCTTGCTCTGGACACTCCTTTCATAGTCTAC
TCTTTACCTACTCCGAAACACTTCAGAGTATGTAGCTGTGTTCACACACA
AAACCGAAAAAGGGTATAATTAACCTGTGGGAAGCCAAGCCCCGAACGGA
CAATCAGGGCAATACTCCTACCCTCTTAAATGCTATGGATCAATTTTTCA
CATGCATTTACTTGGGGAGAAATATATATATATATATATATGTGTGTGTG
TGTGTGCTGCTTGTGGTCAGATCTCTTCTACCATTTTCCCTATGTACTTC
AAAGTACACAATTGTACTATATGATCAGAGGTTGGGGTATGGGTCGAAAA
CTAGTTGAAAGATATGTCCAGACTCTAATAAATACTCTGTAGACCACATT
CCTCCCTTCCTCCCTCACTCAACCCTTGCCTACGGCATTTCAACCCCATG
AACGCAAAAGGTTAGCGGCAATGGTTTGCATATCACGCATCACCTGACTG
GTCACACTGATGCTGTCACAGCAGCGTGTATCATACCTCAACCGGATATA
GTCGTTTCTGGGGGGATGGATGCTGACCTCCGTGTCTGGGAAACCAGCAC
AAGACAAGTAAGGGTTACAAACTATGAGGTATGATTCATTACCATACTCC
TGCTTTATAAGAGTATTGTGTACAGAGTCAAGTGGAGCTGAGTGAAAGTA
TCTTAGAGGTACAACTCTTGCCATGTTTGTCTGTTTGGGGCTTGGCTTCC
CACCGTTTTTTTAATGGCATTTTCTACTCCAAAAAGTTTCAGAGTAGATA
AAATGTGTACGTTATGACAAGGTGTGGCAGAACAAGAATATTGACACTTC
CTAACAGAATAATCAAAATTATATCAAAATCGCAACATTGGATTTTGGCC
CCCAAATGGACGAGGCTCTATCCTCTAAGGTACTTTGACTCAACTGATAG
CCTGCTCTCTATGAAACTCTGATACTTGCCTATATGTCGTTGATTGTCTT
ATGCACAAAATAATCACATGAAATGGTCTGCATATACAGTACACAGCAGG
GAATACCATCTGTACTTGTATCTGAACAGCTACAATAATACTCAAGTGTG
TTCGGTAAGTCATCGGGTTTCGATCAACCAGGAGTTTGGGCTACAACTAT
TTTGAATGGAGTTCAAGATTAGCAAAGACATCCCTCAGGCCCTCTCCCTT
ATTTCCCCTCCCCTCCACATACCCACCGTTGACAACACTCATCATCCCCC
AAAGTGCAAGAGGGTCCTGAAAGGGCACTCCAAGGGCGTGTCAGACATCG
ACTACAGTCCATCCCAGCGCATCATTGTTAGTGCTGGCTTTGACCACGAT
ATTCTGGTGTGGAGCCCAGTCGTCGGACAGGTCAGATGATATCTGTTGTA
GATGTCACATGGTTGATACAGGATCCAACATCATAGTTTCAAAGGCGAAA
AATTGACTACAAAATAAGTATGCTGATTCCTGGGATTTGGGCATATATGC
GCACTGCAGTGTTCTTAGAGGAGGTGATTGGGGGCGACTATGGAGCCAAG
ACTCTTCCTTGCACTGTTTGATTATCCTCACTTTCTTTAACAGACACCTT
CTCCATCTTGTGTTCATCCTTTCAAGTAGTAGTACTTGAAGTAGATAGAT
GTGACGGCACTAACCCTTCGGCGGCATGATGCATTTTGCAAGTCATGAAA
TGACAAAAATCTTGAAAAGTTATTTAAAGGTGAAATATGTCCGAATACTT
TGCATGGATTGACCTTCCTGCTGCATACGGTACTGCCTCATCTCTTGCCT
ACAGGTTATTTGCCAGTTGACAGGTCACACTTGTTCTCTGGTGGGTATAG
GCGTAAGCCAGGTTTTGTCCGAGATGGTATCCATGTCCGTTGATGGAGTC
ATCAAGGTGAGCATCATTAAGGATGCTTGGATTTCCTTCATCGACCTGAT
TTTCCAGGGAGGAAATCGGCCCTGGCAAGCAAGAGGAGACAAAAAATACT
CAGAAATTGGGAAGAAATTATCTCTTTACCCCAAAGTCTCTTCTTTCCAA
CCCAGCACGAAAAGGGCTGGTGGAATCAAGAGGTAGAAGATCTTGATAAA
ATTATTTCTTACACTCCATTTGATAGATTTGATCAAACTGTCAAAATTGT
GTCCTCGGAAGAAGTTGCTACTGTCTGTGGCAAAGAGATACCACCTTTCC
ATCACCACAGCAGTCAGCCAATGCTAGTGACATTTTTACAAAATCTATAT
CAGTTTATCTTATCCCTCCAACACATTCTATCTCTCTAGGTCTGGGATAC
ATCCAACTTCAAGTGTGTGCAGACTCTTCATGCAGCTCAGGTGGAGACTT
AG
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Coding sequence (CDS) from alignment at C-tenellus_contig10477:216..4667-

>mRNA_C-tenellus_contig10477.1.1 ID=mRNA_C-tenellus_contig10477.1.1|Name=mRNA_C-tenellus_contig10477.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=774bp|location=Sequence derived from alignment at C-tenellus_contig10477:216..4667- (Choristocarpus tenellus KU2346)
ATGTCCGAGCCTGTGGAAGCAAAAGGCCATTCTGGAGAGGTCATTGCTGT
GGAATACATACCTACACTTCAATTGCTTGTCACCTCAGGGGCAAAGGAAG
GATGTCTCAGATGCTGGGAAATCCACTCTATACAAGAACTTCAGATCATT
CCAAATCGGAGGCAAGGCAATGCCAGCGAGCCACAAGTCATGCTCAAGTG
GTTGTCAGAGGGTAGAGCTGTGTCGATTCGGGGTCCAAAACCCAATGCCC
AAGGGTCAGGATGCCAGAGGGATGACCAGGGCTTCTCCAACCGGCTCATA
TCTGGTGGGGCTTCTGGGGGAATCAATATATGGGAGGTTAGCGGCAATGG
TTTGCATATCACGCATCACCTGACTGGTCACACTGATGCTGTCACAGCAG
CGTGTATCATACCTCAACCGGATATAGTCGTTTCTGGGGGGATGGATGCT
GACCTCCGTGTCTGGGAAACCAGCACAAGACAATGCAAGAGGGTCCTGAA
AGGGCACTCCAAGGGCGTGTCAGACATCGACTACAGTCCATCCCAGCGCA
TCATTGTTAGTGCTGGCTTTGACCACGATATTCTGGTGTGGAGCCCAGTC
GTCGGACAGGTTATTTGCCAGTTGACAGGTCACACTTGTTCTCTGGTGGG
TATAGGCGTAAGCCAGGTTTTGTCCGAGATGGTATCCATGTCCGTTGATG
GAGTCATCAAGGTCTGGGATACATCCAACTTCAAGTGTGTGCAGACTCTT
CATGCAGCTCAGGTGGAGACTTAG
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