mRNA_C-tenellus_contig10473.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig10473.1.1 vs. uniprot
Match: D8LID0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID0_ECTSI) HSP 1 Score: 285 bits (730), Expect = 2.380e-82 Identity = 153/268 (57.09%), Postives = 188/268 (70.15%), Query Frame = 2 Query: 557 PAPLVPANMAPVPPPPRKRKVTSADIESGDTE--LVDAAHKTVMEKIQGYLKEQDSLTRFGIIALLATFFAGIMGAYVAILVLAITEGNVRYIAVCVTVTAALCWVLWKYCLTGDITRQDQSAIAQDIAQLYSTIPDHTARRGVSERGKEQFTTFRYEKSEMMFTAMTDDGVSLGSERGSELMTDGSAPQCPLCNCGYVDGDTLCLLPCQHVFHHRCINRWCRSHIVCPLCKRNLEAPEPLPMHLVSEEPLTPSGSLMSSFHSERGGG 1354 PAPLVPA +APVP + +AD+E+G+ L DA KT+ME +Q YLK+QD TR ++ +L G++GAYV +L AI+E +V+Y + + L WVLWKYC +GD QDQS IAQDIA LY+ IPDHTA +GVSE+G+ QFT F+YEKSEMMFTA+TDDGVSLGSERGSELM DG+ P CPLCN YV+G LCLLPC HVFH CIN+WC HIVCPLCKR+LEA EPL H ++ P G+ + S RG G Sbjct: 178 PAPLVPALLAPVPXXXXXXRA-AADVEAGEAGEVLEDAPDKTLMEMLQTYLKKQDLYTRIVLVVVLLVLAGGVLGAYVVMLWSAISEESVKYTVLVSVFSVVLFWVLWKYCFSGDQKLQDQSQIAQDIATLYAAIPDHTAVKGVSEKGRAQFTDFKYEKSEMMFTAVTDDGVSLGSERGSELMMDGADPSCPLCNKAYVEGAELCLLPCLHVFHKTCINKWCNRHIVCPLCKRHLEAAEPL--HTLTASYNHPGGNAVQSEPGHRGYG 442
BLAST of mRNA_C-tenellus_contig10473.1.1 vs. uniprot
Match: A0A6H5JTX8_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX8_9PHAE) HSP 1 Score: 285 bits (730), Expect = 3.010e-82 Identity = 149/241 (61.83%), Postives = 177/241 (73.44%), Query Frame = 2 Query: 557 PAPLVPANMAPVPPPPRKRKVTSADIESGDTE--LVDAAHKTVMEKIQGYLKEQDSLTRFGIIALLATFFAGIMGAYVAILVLAITEGNVRYIAVCVTVTAALCWVLWKYCLTGDITRQDQSAIAQDIAQLYSTIPDHTARRGVSERGKEQFTTFRYEKSEMMFTAMTDDGVSLGSERGSELMTDGSAPQCPLCNCGYVDGDTLCLLPCQHVFHHRCINRWCRSHIVCPLCKRNLEAPEPL 1273 PAPLVPA +APVP R+ +ADIE+G+ L DA KT+ME +Q YLK+QD TR ++ +L G +GAYV +L AI+E NV+Y + + L WVLWKYC +GD QDQS IAQDIA LY+ IPDHTA +GVSE+G+ QFT F+YEKSEMMFTA+TDDGVSLGSERGSELM DG+ P CPLCN YV+G LCLLPC HVFH CIN+WC HIVCPLCKR+LEA EPL Sbjct: 176 PAPLVPALLAPVPXXXXXRRA-AADIEAGEAGEVLEDAPDKTLMEMLQTYLKKQDLYTRMVLVVVLLVLAGGALGAYVVMLWYAISEKNVKYTVLVSVFSVVLLWVLWKYCFSGDQKLQDQSQIAQDIATLYAAIPDHTAVKGVSEKGRAQFTDFKYEKSEMMFTAVTDDGVSLGSERGSELMMDGADPSCPLCNKVYVEGAELCLLPCLHVFHKTCINKWCNRHIVCPLCKRHLEAAEPL 415
BLAST of mRNA_C-tenellus_contig10473.1.1 vs. uniprot
Match: A0A7J9K253_9ROSI (RING-type domain-containing protein n=4 Tax=Gossypium TaxID=3633 RepID=A0A7J9K253_9ROSI) HSP 1 Score: 64.3 bits (155), Expect = 2.240e-8 Identity = 35/115 (30.43%), Postives = 51/115 (44.35%), Query Frame = 2 Query: 932 IAQLYSTIPDHTARRGVSERGKEQFTTFRYEKSEMMFTAMTDDGVSLGSERG-------SELMTDGSAPQCPLCNCGYVDGDTLCLLPCQHVFHHRCINRWCRSHIVCPLCKRNL 1255 I + T D + RG + T++++ + TA DD E G E + G C +C YVD D L LPC HVFH C+++W + + CPLCK + Sbjct: 63 IISILGTREDLSQTRGATTESINALPTYKFKSKK---TANNDDQEDSAGEGGVLAAGTEKERLISGEDAACCICLANYVDNDELRELPCDHVFHVECVDKWLKINASCPLCKSEI 174
BLAST of mRNA_C-tenellus_contig10473.1.1 vs. uniprot
Match: A0A1U8EJV5_CAPAN (E3 ubiquitin-protein ligase At4g11680-like isoform X1 n=2 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8EJV5_CAPAN) HSP 1 Score: 64.3 bits (155), Expect = 1.230e-7 Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 2 Query: 1091 ELMTDGSAPQCPLCNCGYVDGDTLCLLPCQHVFHHRCINRWCRSHIVCPLCKRNL 1255 EL +C +C YVDG LC+LPC H FHH CI++W R + CPLCK N+ Sbjct: 273 ELALQPDDSECCICLYKYVDGVELCVLPCNHHFHHGCISKWLRINATCPLCKFNI 327
BLAST of mRNA_C-tenellus_contig10473.1.1 vs. uniprot
Match: A0A0D2UPI9_GOSRA (RING-type domain-containing protein n=20 Tax=Gossypium TaxID=3633 RepID=A0A0D2UPI9_GOSRA) HSP 1 Score: 64.3 bits (155), Expect = 1.810e-7 Identity = 35/115 (30.43%), Postives = 51/115 (44.35%), Query Frame = 2 Query: 932 IAQLYSTIPDHTARRGVSERGKEQFTTFRYEKSEMMFTAMTDDGVSLGSERG-------SELMTDGSAPQCPLCNCGYVDGDTLCLLPCQHVFHHRCINRWCRSHIVCPLCKRNL 1255 I + T D + RG + T++++ + TA DD E G E + G C +C YVD D L LPC HVFH C+++W + + CPLCK + Sbjct: 295 IISILGTREDLSQTRGATTESINALPTYKFKSKK---TANNDDREDSAGEGGVLAAGTEKERLISGEDAACCICLANYVDNDELRELPCDHVFHVECVDKWLKINASCPLCKSEI 406
BLAST of mRNA_C-tenellus_contig10473.1.1 vs. uniprot
Match: A0A2K3NQ08_TRIPR (E3 ubiquitin-protein ligase at4g11680-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NQ08_TRIPR) HSP 1 Score: 60.5 bits (145), Expect = 2.480e-7 Identity = 36/120 (30.00%), Postives = 57/120 (47.50%), Query Frame = 2 Query: 959 DHTARRGVSERGKEQFTTFRYE----KSEMMFTAMTDDGVSLGSERGSELMTDGSAPQCPLCNCGYVDGDTLCLLPCQHVFHHRCINRWCRSHIVCPLCKRNLEAPEPLPMHLVSEEPLT 1306 D T RG + T++++ K+E + T +G + E M G C +C Y + D L LPC H+FH C+++W + + +CPLCK ++ P +VSEE T Sbjct: 20 DVTQTRGATSETINALPTYKFKTTRSKNEDESSPTTIEGGIVAEGTEKERMISGEDAVCCICILNYENEDELRELPCSHLFHKECVDKWLKINALCPLCKSDVGGD---PTRVVSEENST 136
BLAST of mRNA_C-tenellus_contig10473.1.1 vs. uniprot
Match: A0A392MC03_9FABA (E3 ubiquitin-protein ligase (Fragment) n=2 Tax=Trifolium medium TaxID=97028 RepID=A0A392MC03_9FABA) HSP 1 Score: 60.5 bits (145), Expect = 4.100e-7 Identity = 42/151 (27.81%), Postives = 73/151 (48.34%), Query Frame = 2 Query: 812 GNVRYIAVCVTVTAALCWVLWKYCLTGDITRQDQSAIAQDIAQLYSTIPDHTARRGVSERGKEQFTTFRYEKSEMMFTAMTDDGV-SLGSERGSELMTDGSAPQCPLCNCGYVDGDTLCLLPCQHVFHHRCINRWCRSHIVCPLCKRNLEA 1261 G V +C T+ L ++ + D++ Q++ A + I +++P + + +E G +Q TA+ + G+ + G+E+ E + G C +C Y D D L LPC HVFH RC+++W + + CPLCK + A Sbjct: 45 GYVMPFILCATICCCLPCIISALDIREDLS-QNRGATVESI----NSLPVYKFKVKNNENGVDQNIN----------TALEECGILAAGTEK--ERILSGKDAVCCICLAKYADNDELRELPCSHVFHVRCVDKWLKINASCPLCKSEVGA 178
BLAST of mRNA_C-tenellus_contig10473.1.1 vs. uniprot
Match: UPI001E691EE7 (E3 ubiquitin-protein ligase At1g63170-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E691EE7) HSP 1 Score: 61.6 bits (148), Expect = 1.230e-6 Identity = 37/129 (28.68%), Postives = 58/129 (44.96%), Query Frame = 2 Query: 932 IAQLYSTIPDHTARRGVSERGKEQFTTFRYE----KSEMMFTAMTDDGVSLGSERGSELMTDGSAPQCPLCNCGYVDGDTLCLLPCQHVFHHRCINRWCRSHIVCPLCKRNLEAPEPLPMHLVSEEPLT 1306 I D T RG + T++++ K+E + T +G + E M G C +C Y + D L LPC H+FH C+++W + + +CPLCK ++ P +VSEE T Sbjct: 252 IISALGVTEDVTQTRGATSETINALPTYKFKTTRSKNEDESSPTTIEGGIVAEGTEKERMISGEDAVCCICILNYENEDELRELPCSHLFHKECVDKWLKINALCPLCKSDVAGD---PTRVVSEENST 377
BLAST of mRNA_C-tenellus_contig10473.1.1 vs. uniprot
Match: A0A7N0V2Z2_KALFE (RING-type domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0V2Z2_KALFE) HSP 1 Score: 61.6 bits (148), Expect = 1.620e-6 Identity = 43/150 (28.67%), Postives = 64/150 (42.67%), Query Frame = 2 Query: 899 TRQDQSAIAQDIAQ-----LYSTIPDHTARRGVSERGKE--QFTTFRYEKSEMMFTAMTDDGVSLGSE-RGSELMTDGSAP-------------------QCPLCNCGYVDGDTLCLLPCQHVFHHRCINRWCRSHIVCPLCKRNLEAPE 1267 +R QS+ + ++A L T+P +G S G T + M + + G S+G+E RG S P +C +C Y GD L LPC H++H CI W ++ +CP+CKR+L APE Sbjct: 369 SRGSQSSASSELASAVALSLAPTLPAAAENQGASSAGSSVSAATQESVDPDNMTYEELQSLGDSIGTESRGLSKELIASFPTQKLDAKSGWFSSQKSTPEECAICITEYEAGDELLTLPCLHLYHKPCITPWLTNNKICPMCKRDLSAPE 518
BLAST of mRNA_C-tenellus_contig10473.1.1 vs. uniprot
Match: A0A444CUI7_ENSVE (RING-type domain-containing protein n=5 Tax=Musaceae TaxID=4637 RepID=A0A444CUI7_ENSVE) HSP 1 Score: 61.2 bits (147), Expect = 1.680e-6 Identity = 31/99 (31.31%), Postives = 49/99 (49.49%), Query Frame = 2 Query: 974 RGVSERGKEQFTTFRYE--------KSEMMFTAMTDDGVSLGSERGSELMTDGSAPQCPLCNCGYVDGDTLCLLPCQHVFHHRCINRWCRSHIVCPLCK 1246 RG + + T+R++ + E+ + D G+ L + E M G C +C YVD + L LPC HVFH C+++W + + +CPLCK Sbjct: 290 RGATSESIDALPTYRFKTKRRKNRGEREINLESQCDGGI-LAAGTDKERMISGEDAVCCICLAKYVDNEELRELPCSHVFHKECVDKWLKINALCPLCK 387 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10473.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10473.1.1 >prot_C-tenellus_contig10473.1.1 ID=prot_C-tenellus_contig10473.1.1|Name=mRNA_C-tenellus_contig10473.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=369bp MGSVKEKDQGRKNQRVKQALNPLYGSSELSKSGEMAKWSEKRNGEVKRERback to top mRNA from alignment at C-tenellus_contig10473:3..4265- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10473.1.1 ID=mRNA_C-tenellus_contig10473.1.1|Name=mRNA_C-tenellus_contig10473.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4263bp|location=Sequence derived from alignment at C-tenellus_contig10473:3..4265- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10473:3..4265- >mRNA_C-tenellus_contig10473.1.1 ID=mRNA_C-tenellus_contig10473.1.1|Name=mRNA_C-tenellus_contig10473.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1107bp|location=Sequence derived from alignment at C-tenellus_contig10473:3..4265- (Choristocarpus tenellus KU2346)back to top |