mRNA_C-tenellus_contig10472.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10472.3.1
Unique NamemRNA_C-tenellus_contig10472.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10472.3.1 vs. uniprot
Match: A0A6H5KTI0_9PHAE (UMP-CMP kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.100e-21
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    4 VVFVLGGPGSGKGTQCQLLEGDAELGYAHLSAGDLLREERNSGSDLAEMINDYIR 168
            VVFVLGGPGSGKGTQC L+  +  LGYAHLSAGDLLR ERNSGS+LA MIN++IR
Sbjct:   52 VVFVLGGPGSGKGTQCALIAEEEALGYAHLSAGDLLRAERNSGSELAGMINEFIR 106
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BLAST of mRNA_C-tenellus_contig10472.3.1 vs. uniprot
Match: D8LRC1_ECTSI (UMP-CMP kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC1_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 9.810e-21
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    4 VVFVLGGPGSGKGTQCQLLEGDAELGYAHLSAGDLLREERNSGSDLAEMINDYIR 168
            VVFVLGGPGSGKGTQC L+  +  LGYAHLSAGDLLR ERNSGS+LA MIN++IR
Sbjct:   56 VVFVLGGPGSGKGTQCALIAEEEALGYAHLSAGDLLRAERNSGSELAGMINEFIR 110
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BLAST of mRNA_C-tenellus_contig10472.3.1 vs. uniprot
Match: A0A7S0ALV3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ALV3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.600e-17
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 RVVFVLGGPGSGKGTQCQLLEGDAELGYAHLSAGDLLREERNSGSDLAEMINDYI 165
            +VVFVLGGPG+GKGTQC+L+    + G+AHLSAGDLLR ERNSGS LAE+IN  I
Sbjct:   54 QVVFVLGGPGAGKGTQCELIT-KRQSGWAHLSAGDLLRAERNSGSKLAELINSKI 107
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BLAST of mRNA_C-tenellus_contig10472.3.1 vs. uniprot
Match: X6PEU1_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6PEU1_RETFI)

HSP 1 Score: 77.0 bits (188), Expect = 1.190e-16
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 RVVFVLGGPGSGKGTQCQLLEGDAELGYAHLSAGDLLREERNSGSDLAEMINDYI 165
            +VVFVLGGPG+GKGTQCQ +    E G  HLSAGDLLREE+NSGS  AE+IN YI
Sbjct:   30 QVVFVLGGPGAGKGTQCQKIVD--EFGIVHLSAGDLLREEKNSGSKDAELINHYI 82
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BLAST of mRNA_C-tenellus_contig10472.3.1 vs. uniprot
Match: A0A7S1DCJ6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCJ6_CYCTE)

HSP 1 Score: 77.0 bits (188), Expect = 1.960e-16
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 RVVFVLGGPGSGKGTQCQLLEGDAELGYAHLSAGDLLREERNSGSDLAEMINDYIR 168
            R+VFVLGGPG+GKGTQC LL+    +G+AHLSAGDLLR ER  G  LA++IN++I+
Sbjct:   16 RIVFVLGGPGAGKGTQCALLQ--ERMGWAHLSAGDLLRAERKRGGPLADLINNHIK 69
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BLAST of mRNA_C-tenellus_contig10472.3.1 vs. uniprot
Match: A0A0L0D709_THETB (Adenylate kinase isoenzyme 1 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D709_THETB)

HSP 1 Score: 77.0 bits (188), Expect = 3.950e-16
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RVVFVLGGPGSGKGTQC-QLLEGDAELGYAHLSAGDLLREERNSGSDLAEMINDYIR 168
            +  FVLGGPG+GKGTQC +L+E   E G+ HLSAGDLLR ER+SGS+ AE+INDYI+
Sbjct:   19 KAYFVLGGPGAGKGTQCAKLVE---EFGFTHLSAGDLLRAERDSGSEAAELINDYIK 72
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BLAST of mRNA_C-tenellus_contig10472.3.1 vs. uniprot
Match: C5LAN5_PERM5 (UMP-CMP kinase n=6 Tax=Perkinsus TaxID=28000 RepID=C5LAN5_PERM5)

HSP 1 Score: 77.0 bits (188), Expect = 4.110e-16
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    4 VVFVLGGPGSGKGTQCQLLEGDAELGYAHLSAGDLLREERN-SGSDLAEMINDYIR 168
            VVFVLGGPG+GKGTQC L+E   E GY HLSAGDLLREERN  GS+  ++I  YIR
Sbjct:    5 VVFVLGGPGAGKGTQCDLIE--KEYGYVHLSAGDLLREERNREGSEYGDLIEKYIR 58
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BLAST of mRNA_C-tenellus_contig10472.3.1 vs. uniprot
Match: A0A7S3H2J5_9STRA (UMP-CMP kinase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H2J5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 7.980e-16
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 RVVFVLGGPGSGKGTQC-QLLEGDAELGYAHLSAGDLLREERNSGSDLAEMINDYIR 168
            ++VFVLGGPGSGKGT C +++E     GY HLSAGDLLR ER SGS+LA+MIN YI+
Sbjct:   42 KIVFVLGGPGSGKGTNCTRIVE---RFGYVHLSAGDLLRAERESGSELADMINTYIK 95
[Close]
BLAST of mRNA_C-tenellus_contig10472.3.1 vs. uniprot
Match: A0A4D9CS72_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS72_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.250e-15
Identity = 38/55 (69.09%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    4 VVFVLGGPGSGKGTQCQLLEGDAELGYAHLSAGDLLREERNSGSDLAEMINDYIR 168
            VVFVLGGPG+GKGTQC LL      G  HLSAGDLLREER  G++LA MIN YI+
Sbjct:   69 VVFVLGGPGAGKGTQCSLLV--ERYGLIHLSAGDLLREERKRGTELASMINTYIK 121
[Close]
BLAST of mRNA_C-tenellus_contig10472.3.1 vs. uniprot
Match: A0A7S2S0N2_9STRA (UMP-CMP kinase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0N2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.980e-15
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    4 VVFVLGGPGSGKGTQCQLLEGDAELGYAHLSAGDLLREERNSGSDLAEMINDYIR 168
            VVFVLGGPGSGKGT C  +    E GY HLSAGDLLR+ER SGS L ++I +YIR
Sbjct:   48 VVFVLGGPGSGKGTNCDRIV--KEFGYTHLSAGDLLRQERRSGSKLGDLIEEYIR 100
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10472.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTI0_9PHAE9.100e-2178.18UMP-CMP kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D8LRC1_ECTSI9.810e-2178.18UMP-CMP kinase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A7S0ALV3_9STRA9.600e-1770.91Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
X6PEU1_RETFI1.190e-1670.91Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A7S1DCJ6_CYCTE1.960e-1664.29Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A0L0D709_THETB3.950e-1666.67Adenylate kinase isoenzyme 1 n=1 Tax=Thecamonas tr... [more]
C5LAN5_PERM54.110e-1669.64UMP-CMP kinase n=6 Tax=Perkinsus TaxID=28000 RepID... [more]
A0A7S3H2J5_9STRA7.980e-1666.67UMP-CMP kinase n=1 Tax=Spumella elongata TaxID=890... [more]
A0A4D9CS72_9STRA1.250e-1569.09Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2S0N2_9STRA1.980e-1567.27UMP-CMP kinase n=1 Tax=Rhizochromulina marina TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10472contigC-tenellus_contig10472:3207..3377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LRC1
Preferred nameCMPK1
PFAMsADK
Model size171
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K13800
KEGG ReactionR00158,R00512,R01665,R11891,R11892
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00052
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004127,GO:0004550,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006165,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006225,GO:0006227,GO:0006240,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009185,GO:0009186,GO:0009188,GO:0009189,GO:0009193,GO:0009194,GO:0009196,GO:0009197,GO:0009218,GO:0009219,GO:0009220,GO:0009221,GO:0009259,GO:0009260,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0018963,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0019752,GO:0019856,GO:0022414,GO:0022602,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0033862,GO:0034404,GO:0034641,GO:0034654,GO:0036430,GO:0042455,GO:0042537,GO:0042698,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046048,GO:0046049,GO:0046062,GO:0046077,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046385,GO:0046390,GO:0046483,GO:0046704,GO:0046705,GO:0046939,GO:0046940,GO:0048511,GO:0048609,GO:0050145,GO:0055086,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Exons1
Evalue1.61e-21
EggNOG OGsCOG0563@1|root,KOG3079@2759|Eukaryota
EC2.7.4.14
Descriptioncytidylate kinase activity
Cds size171
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789133.3426907-CDS-C-tenellus_contig10472:3206..33771680789133.3426907-CDS-C-tenellus_contig10472:3206..3377Choristocarpus tenellus KU2346CDSC-tenellus_contig10472 3207..3377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10472.3.1prot_C-tenellus_contig10472.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10472 3207..3377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10472.3.1

>prot_C-tenellus_contig10472.3.1 ID=prot_C-tenellus_contig10472.3.1|Name=mRNA_C-tenellus_contig10472.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=57bp
RVVFVLGGPGSGKGTQCQLLEGDAELGYAHLSAGDLLREERNSGSDLAEM
INDYIR*
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mRNA from alignment at C-tenellus_contig10472:3207..3377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10472.3.1 ID=mRNA_C-tenellus_contig10472.3.1|Name=mRNA_C-tenellus_contig10472.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=171bp|location=Sequence derived from alignment at C-tenellus_contig10472:3207..3377+ (Choristocarpus tenellus KU2346)
CGAGTGGTGTTCGTCCTTGGTGGTCCTGGTTCTGGCAAGGGCACACAATG
CCAGTTGCTGGAGGGGGATGCTGAGCTGGGATATGCACACCTGTCTGCAG
GGGACCTGCTCAGAGAGGAACGGAACTCTGGCTCAGACCTAGCTGAAATG
ATCAATGATTATATAAGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10472:3207..3377+

>mRNA_C-tenellus_contig10472.3.1 ID=mRNA_C-tenellus_contig10472.3.1|Name=mRNA_C-tenellus_contig10472.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=171bp|location=Sequence derived from alignment at C-tenellus_contig10472:3207..3377+ (Choristocarpus tenellus KU2346)
CGAGTGGTGTTCGTCCTTGGTGGTCCTGGTTCTGGCAAGGGCACACAATG
CCAGTTGCTGGAGGGGGATGCTGAGCTGGGATATGCACACCTGTCTGCAG
GGGACCTGCTCAGAGAGGAACGGAACTCTGGCTCAGACCTAGCTGAAATG
ATCAATGATTATATAAGGTGA
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