mRNA_C-tenellus_contig10455.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10455.1.1
Unique NamemRNA_C-tenellus_contig10455.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10455.1.1 vs. uniprot
Match: D7G102_ECTSI (Fatty acid desaturase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G102_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.400e-25
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 MGGINYQIEHHLFPSMSHMHYQDIAPIVQATCDDFGVPYSFHPTLWSAYISFLKNMKHCS 180
            MGGINYQIEHHLFPSMSHM Y +IAPIV+  C++F +PY+ HPTLWSAY S+LK++  CS
Sbjct:    1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHLVVCS 60
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BLAST of mRNA_C-tenellus_contig10455.1.1 vs. uniprot
Match: A0A835YNM2_9STRA (FA_desaturase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM2_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.900e-23
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    4 GGINYQIEHHLFPSMSHMHYQDIAPIVQATCDDFGVPYSFHPTLWSAYISFLKNM 168
            GGINYQIEHHLFPSM HMHY  +AP+V+ATC +F +PYS H TLWSAY S+L+++
Sbjct:    2 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 56
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BLAST of mRNA_C-tenellus_contig10455.1.1 vs. uniprot
Match: A0A6H5KKY7_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.010e-21
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 MGGINYQIEHHLFPSMSHMHYQDIAPIVQATCDDFGVPYSFHPTLWSAYISFLKNMKHCS 180
            MGGINYQIEHHLFPSMSHM Y +IAPIV+  C +F +PY+ HPTLW+AY S+LK++  CS
Sbjct:  629 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPYNAHPTLWTAYASYLKHLVVCS 688
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BLAST of mRNA_C-tenellus_contig10455.1.1 vs. uniprot
Match: UPI0019BF28EB (Acyl-CoA desaturase n=1 Tax=Rhizobacter sp. TaxID=1909292 RepID=UPI0019BF28EB)

HSP 1 Score: 78.2 bits (191), Expect = 1.390e-15
Identity = 31/57 (54.39%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 MGGINYQIEHHLFPSMSHMHYQDIAPIVQATCDDFGVPYSFHPTLWSAYISFLKNMK 171
            +GG+N+Q+EHHLFP +SH+HY  I+ IV+A C  FG+PY+++PT+WSA  S  + MK
Sbjct:  295 VGGLNFQVEHHLFPKISHVHYPAISKIVEAQCKQFGLPYNYYPTMWSALCSHFRFMK 351
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BLAST of mRNA_C-tenellus_contig10455.1.1 vs. uniprot
Match: UPI000C0BC3C6 (acyl-CoA desaturase n=1 Tax=Sphingobacterium sp. 1.A.4 TaxID=2044603 RepID=UPI000C0BC3C6)

HSP 1 Score: 77.4 bits (189), Expect = 2.470e-15
Identity = 31/60 (51.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 MGGINYQIEHHLFPSMSHMHYQDIAPIVQATCDDFGVPYSFHPTLWSAYIS---FLKNMK 171
            +GG+N+Q+EHHLFP +SH+HY ++  IV++TC+DFG+PY  +PT WS++ S   F+K M+
Sbjct:  293 LGGLNFQVEHHLFPKISHIHYPELNRIVKSTCNDFGIPYHEYPTFWSSFNSHFNFIKTMR 352
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BLAST of mRNA_C-tenellus_contig10455.1.1 vs. uniprot
Match: A0A176W6Z5_MARPO (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W6Z5_MARPO)

HSP 1 Score: 77.8 bits (190), Expect = 2.650e-15
Identity = 31/57 (54.39%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    4 GGINYQIEHHLFPSMSHMHYQDIAPIVQATCDDFGVPYSFHPTLWSAYISFLKNMKH 174
            GG+N+QIEHHLFP + H+HY  I PIV+ATCD+F VPY+ +PT W+A  +  +++K+
Sbjct:  602 GGLNHQIEHHLFPGVCHVHYPSIQPIVKATCDEFNVPYTSYPTFWAALRAHFQHLKN 658
[Close]
BLAST of mRNA_C-tenellus_contig10455.1.1 vs. uniprot
Match: L0D6F2_SINAD (Fatty acid desaturase n=3 Tax=Singulisphaera TaxID=466152 RepID=L0D6F2_SINAD)

HSP 1 Score: 77.4 bits (189), Expect = 2.680e-15
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 MGGINYQIEHHLFPSMSHMHYQDIAPIVQATCDDFGVPYSFHPTLWSAYISFLK 162
            +GG+NYQIEHHLFP + H+HY  I+PIV+ATC DFG+PY  HPT   A  S ++
Sbjct:  295 LGGLNYQIEHHLFPKVCHVHYPAISPIVEATCKDFGIPYQIHPTFRDALSSHVR 348
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BLAST of mRNA_C-tenellus_contig10455.1.1 vs. uniprot
Match: A0A0C1KNQ8_9BACT (Fatty acid desaturase n=1 Tax=Flavihumibacter sp. ZG627 TaxID=1463156 RepID=A0A0C1KNQ8_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 4.820e-15
Identity = 30/57 (52.63%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 MGGINYQIEHHLFPSMSHMHYQDIAPIVQATCDDFGVPYSFHPTLWSAYISFLKNMK 171
            +GG+NYQ+EHHLFP +SH+HYQ I+PIV+ TC ++G+PY+ +PT+ ++ +S  + MK
Sbjct:  295 VGGLNYQVEHHLFPRISHVHYQAISPIVEKTCKEYGLPYNSYPTMTASLMSHFRMMK 351
[Close]
BLAST of mRNA_C-tenellus_contig10455.1.1 vs. uniprot
Match: A0A2G4IDI8_9BACT (Linoleoyl-CoA desaturase n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2G4IDI8_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 5.350e-15
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 MGGINYQIEHHLFPSMSHMHYQDIAPIVQATCDDFGVPYSFHPTLWSAYISFLKNMKHCS 180
            +GG+NYQIEHHLFPS+SH+HY  +APIV+ TC + GV YS HPT  SA  S  + +K  S
Sbjct:  312 LGGLNYQIEHHLFPSVSHVHYPALAPIVEETCKEHGVSYSQHPTFRSAIASHFRWLKQMS 371
[Close]
BLAST of mRNA_C-tenellus_contig10455.1.1 vs. uniprot
Match: A0A4Y6Q468_9DELT (Acyl-CoA desaturase n=2 Tax=Persicimonas caeni TaxID=2292766 RepID=A0A4Y6Q468_9DELT)

HSP 1 Score: 75.9 bits (185), Expect = 7.690e-15
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 MGGINYQIEHHLFPSMSHMHYQDIAPIVQATCDDFGVPYSFHPTLWSAYISFLKNMK 171
            +GG+NYQ+EHHLFP +SH+HY  +A IV+ TC++FGVPY   PTLW    S  ++++
Sbjct:  256 VGGLNYQVEHHLFPRISHIHYPKLAEIVRETCEEFGVPYHAQPTLWGGIRSHFRHLR 312
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10455.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G102_ECTSI3.400e-2570.00Fatty acid desaturase, partial n=1 Tax=Ectocarpus ... [more]
A0A835YNM2_9STRA3.900e-2369.09FA_desaturase domain-containing protein (Fragment)... [more]
A0A6H5KKY7_9PHAE4.010e-2168.33Cytochrome b5 heme-binding domain-containing prote... [more]
UPI0019BF28EB1.390e-1554.39Acyl-CoA desaturase n=1 Tax=Rhizobacter sp. TaxID=... [more]
UPI000C0BC3C62.470e-1551.67acyl-CoA desaturase n=1 Tax=Sphingobacterium sp. 1... [more]
A0A176W6Z5_MARPO2.650e-1554.39Cytochrome b5 heme-binding domain-containing prote... [more]
L0D6F2_SINAD2.680e-1559.26Fatty acid desaturase n=3 Tax=Singulisphaera TaxID... [more]
A0A0C1KNQ8_9BACT4.820e-1552.63Fatty acid desaturase n=1 Tax=Flavihumibacter sp. ... [more]
A0A2G4IDI8_9BACT5.350e-1558.33Linoleoyl-CoA desaturase n=2 Tax=Gemmatimonadetes ... [more]
A0A4Y6Q468_9DELT7.690e-1552.63Acyl-CoA desaturase n=2 Tax=Persicimonas caeni Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10455contigC-tenellus_contig10455:343..3222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G102
PFAMsFA_desaturase
Model size180
Max annot lvl2759|Eukaryota
KEGG koko:K12418
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.57e-26
EggNOG OGsCOG3239@1|root,2SE5J@2759|Eukaryota
Ec32 ortholog descriptionFatty acid desaturase, partial
Ec32 orthologEc-22_001490.1
EC1.14.19.31
DescriptionFatty acid desaturase
Cds size180
COG categoryI
BRITEko00000,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789132.0987499-CDS-C-tenellus_contig10455:342..4611680789132.0987499-CDS-C-tenellus_contig10455:342..461Choristocarpus tenellus KU2346CDSC-tenellus_contig10455 343..461 +
1680789132.114246-CDS-C-tenellus_contig10455:3161..32221680789132.114246-CDS-C-tenellus_contig10455:3161..3222Choristocarpus tenellus KU2346CDSC-tenellus_contig10455 3162..3222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10455.1.1prot_C-tenellus_contig10455.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10455 343..3222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10455.1.1

>prot_C-tenellus_contig10455.1.1 ID=prot_C-tenellus_contig10455.1.1|Name=mRNA_C-tenellus_contig10455.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=60bp
MGGINYQIEHHLFPSMSHMHYQDIAPIVQATCDDFGVPYSFHPTLWSAYI
SFLKNMKHCS
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mRNA from alignment at C-tenellus_contig10455:343..3222+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10455.1.1 ID=mRNA_C-tenellus_contig10455.1.1|Name=mRNA_C-tenellus_contig10455.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2880bp|location=Sequence derived from alignment at C-tenellus_contig10455:343..3222+ (Choristocarpus tenellus KU2346)
ATGGGTGGTATCAACTACCAAATAGAGCACCATCTATTCCCCTCCATGTC
CCACATGCACTACCAGGATATTGCACCCATTGTACAAGCCACCTGTGACG
ATTTTGGGGTTCCTTACAGGTGAGGAAGGATGACCTAACATTACAAAGTC
ACTTTGGACCCTAGTTAGGTTTATCAGCATCAACCAATGCCTAGAACAAG
CCAACCTTGGAAAATCACACTCCGACCCAAGATATCTGTTGTAAGTGCCG
AAGCCGTGGTGTTTTTCAGTGCTTCCATTGTGACATCATCGTTCAAAGGT
GTATGGAAGAGGTCGAGAATATGATGGTAAACTATCATATGTTTTCGAAT
AGCGTGACTTACATCAAGCTTTAAGGCAAGATCTTAAGTGTCGGAGGCAG
TGATTGACTGTTGGCAATGAGGTTCTAGTCCACACCTAATGTAAAACTAC
GTACATACCCTTCAAAAAACGGTGTCGCAGGAGCACTTCAATATTACAAC
TCTCTCTATTGTAGCACAATGTGGTTAGATATGCCAGTTGTGCATGAAAA
GCTTGTAGAAGCAATTGCAACGTTTTTTCCTAGTCTATGCTGGATACTAT
ACATTGGCATATGAAGTAGGATGAAGACTCTGTTTGAAACATGAAAACGC
AGCATACATTTGTATTTATTGGAGTACTACCTGAACATCGATTCAGGCAG
GGAAGCAGTGTGTTGTTCACGCCCTCTACCACATGTATACGTTGGGTATA
TTATGTTCAATTATTTGGAACCTAAACTGCCTTCATTGTTCCAAGTGATA
TTGAGTGTTTATTTGATTGTGTCTTCCATCCAAACTACACTATTGTAGTT
CAATTCTGTAGAGAGGACCGGCAGGCAAGGATAATATCACCACTTCCTGA
GACGCTAGGTTGTCATCATAACTCTTTGTGTACATGCTTTCGGCAAACAC
TGGTTGAGGGTAAAAGTATCTGGAGGGGGGAGGGGGTCTACACCAGGGTG
TCCATTTGACCCTAAATCAGGAAAAGTGCATTTACTTTATCCATCCGAAG
TATGCAGCCAAATCACCCAAAAATCGCGACATGAAAAAATTGACCCCAAA
TGGCCACCCCCCCCCTAGATACTTTGAGCCTGATGCTGTGAATTTATGTG
ATTGATATGAAAGTACTCGCTGCCAACACGAAGTGCCTCTGCCATCTTTG
CTTCGATTCAATTGTTGTGGCTTGATGAGGCTATAGATTGCAATGGGAAT
ATAGTAAGTTGTCTTGTTCCATTTTGGAGCTGGAGCAGGTCCTTGCTCTC
TCAGGTCCATATTACTAGGATTTCAATAGCCCTGAGAGCACCTCAGGGAC
AATGAGATTATTGGGGTTGAGTATCTAGACCATGAGTATAATTACATCTG
ACGGGTGTGCCCTCCCACATGAGGAGGTTGATGATGAAGGTAAAGGGGGA
TATGAAAACGAGTAGAAGGAATCAGAACGCCTAAGGTTCAGCTTGCCATC
CAGCAAGAAAGGAGAAGAGTGTCCAGGAGTGGATAAAAATGAACCCCTTT
GACCGAGGGATCCCATTTGACACTACGTTCAACATGTACCTCCAACATAT
ACTCCAAGTAAACAAGGAGATACAAGCCATGTAGTATACAAATATGTGGC
CCTGTTCACACACTGTCCGTGTTGGGGGGGGGGAGGGGAGAGCACCCAAA
GGTGCAGAAGGGCTTCACTATATGGTGATTTACAAGCTATATGCAGGAGG
AGTTCAGCTGCTGCTATAGGTGGGTTGGAAAACTTGATGGCCAGAGAGCA
CATACAGTATGTGGACGATGAGAGCAGAACTTGCAATGGATCTGTTCATG
TGCAGACAGGACAGGGCTTCTATTTTTCTGCACTTGACCAAACTTGATAA
AGCTGCGTTCTGGGCACTCCTCCTAAAGAGCCAGACTTGGAGTGCATGTT
CTCACCATCTGTGAATGTTGCAACAATACAAACACCTTGGGACAAAAATA
TTGCCTACTCCCTGTGTGTTCCTGCAGCACATCCGACTTAAGGATGCATG
GCAGGTTGTCAAGAATGGAAAGAAAAAAAATAGCTACTTGATGTAAATTC
TAAACTACAGTCATGTTTCAATTATTTTGAGTACAGTTTTGGCACACAAA
GAGATCTCGAGTCAATTAACCTTCGATTTATGCCCTATGAAAAAATGAGA
GACGGCACACCATAAAATCAAAATGTTTCAAAGTATTTTCAAATCTACAG
GGACACTGACGGCCATCATAGAAGTAGAGAGATTGGTAACACTTGCAGTG
AGCTGGTTATTGAATACCCTCTGCTGCAATCCTGTATATACTCTCTCAAA
TCATATACCTAGCACCTCCTCACAACTTGTGGTGTATCCTTCTACGATAG
CTTCCGGATCCTTAAGGTTTGCTTAGGTATATCACATGAGAACAAGCATC
TCATGAGTAAGGTTCATTGTCGCACATGTACTTACATTTCAATGGGGTCA
ATACATATTCCTGTTTCCCTTTATAGGGCCATGTTCTCTACAATGTGGGG
GAGAATGAAAGTTGTCATGCATGACTTAAGTGCCCCACTTCGTATTGGTT
GCTTTCCAAAGGCAGTGCAATGCACTGTTTCATACTGGGAACAGCGGACT
TCACTTTTTTTGTGGGAATGCTGGTTCTATTTCGATATTAGTGCAGTAGC
AGCACTTGCAAAACATTTGTGACCTTTGCAATGATATGTTCAAGCTGACT
GACAAACTTTGTACTTCCACACATGCCCCTTGTTGTTCCCTCTGCTATGT
TGTCGTACTCCGAACACAGCTTTCATCCCACCCTGTGGTCTGCCTACATA
TCCTTCTTGAAGAATATGAAACACTGCAGT
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Coding sequence (CDS) from alignment at C-tenellus_contig10455:343..3222+

>mRNA_C-tenellus_contig10455.1.1 ID=mRNA_C-tenellus_contig10455.1.1|Name=mRNA_C-tenellus_contig10455.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=180bp|location=Sequence derived from alignment at C-tenellus_contig10455:343..3222+ (Choristocarpus tenellus KU2346)
ATGGGTGGTATCAACTACCAAATAGAGCACCATCTATTCCCCTCCATGTC
CCACATGCACTACCAGGATATTGCACCCATTGTACAAGCCACCTGTGACG
ATTTTGGGGTTCCTTACAGCTTTCATCCCACCCTGTGGTCTGCCTACATA
TCCTTCTTGAAGAATATGAAACACTGCAGT
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