mRNA_C-tenellus_contig10416.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10416.1.1
Unique NamemRNA_C-tenellus_contig10416.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10416.1.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.540e-11
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 3 
Query:   39 ILQQLVQFTSPDEFLFIAGVSREWRDIWLTSRPTTTSINSVVQSVSRMTWAKEYGCPWDENICAMTAGRGDLSVL 263
            IL+ L+ F + + FLF+AGVSR WRD W   RP  T +++ VQS SR+ WA+  G  W  ++CA  A  G L+ L
Sbjct:  733 ILRHLISFAARNGFLFVAGVSRSWRDAWGVERPPETEVDAAVQSPSRLGWARASGLGWGPSVCARAASGGHLATL 807
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10416.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXW1_9PHAE1.540e-1145.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10416contigC-tenellus_contig10416:1527..2731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1205
Hectar predicted targeting categoryother localisation
Exons1
Cds size858
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789130.5601423-UTR-C-tenellus_contig10416:1526..16941680789130.5601423-UTR-C-tenellus_contig10416:1526..1694Choristocarpus tenellus KU2346UTRC-tenellus_contig10416 1527..1694 -
1680789130.5821204-UTR-C-tenellus_contig10416:2552..27311680789130.5821204-UTR-C-tenellus_contig10416:2552..2731Choristocarpus tenellus KU2346UTRC-tenellus_contig10416 2553..2731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789130.5717258-CDS-C-tenellus_contig10416:1694..25521680789130.5717258-CDS-C-tenellus_contig10416:1694..2552Choristocarpus tenellus KU2346CDSC-tenellus_contig10416 1695..2552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10416.1.1prot_C-tenellus_contig10416.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10416 1695..2552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10416.1.1

>prot_C-tenellus_contig10416.1.1 ID=prot_C-tenellus_contig10416.1.1|Name=mRNA_C-tenellus_contig10416.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=286bp
MTWAKEYGCPWDENICAMTAGRGDLSVLIYARAEGCPWDARTCAYAAREG
QLDTLKWARANGCAWDSRTCSSAAGGGHLEVLKWVRVNGCPWGVGTCSRA
ARRGHLDIMKWVRANGCPWDGTTYSQGALGGHLHALEWAKANGCPWDGGP
WFGGICASAAEGGYLEILKWARANGCPWDTRTCSNAAKGGHLNTLKWARS
KGCPWDARTCQQAAIGGHLDILKYARANDCPWDEWTLCCAVECGHLDIVQ
WALDNGIPMVEGIFSPRAALQFRELLSSYMAGGPA*
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mRNA from alignment at C-tenellus_contig10416:1527..2731-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10416.1.1 ID=mRNA_C-tenellus_contig10416.1.1|Name=mRNA_C-tenellus_contig10416.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1205bp|location=Sequence derived from alignment at C-tenellus_contig10416:1527..2731- (Choristocarpus tenellus KU2346)
CCCCAGAACCAGACTTCGGCATCAATGGTAGCCTATATATTTTGCAGCAA
CTCGTACAGTTCACTTCTCCCGATGAGTTCCTTTTCATCGCTGGTGTATC
TAGAGAATGGAGAGATATCTGGTTGACGAGTCGACCTACCACAACTAGTA
TCAACTCAGTCGTTCAGTCGGTGTCTCGAATGACTTGGGCTAAGGAATAC
GGTTGTCCATGGGATGAAAATATCTGTGCAATGACGGCTGGGCGAGGTGA
TCTGTCCGTGCTAATCTACGCCAGAGCGGAAGGTTGTCCATGGGATGCTC
GGACCTGTGCGTATGCCGCAAGGGAGGGTCAACTCGATACATTGAAGTGG
GCCAGGGCGAACGGCTGTGCCTGGGATTCAAGGACCTGTTCTTCAGCTGC
TGGGGGAGGTCACCTGGAGGTGCTGAAGTGGGTGAGAGTCAATGGCTGCC
CATGGGGTGTGGGGACTTGCTCTCGTGCTGCTCGAAGGGGACATCTGGAT
ATTATGAAGTGGGTCAGGGCCAACGGTTGTCCTTGGGACGGGACGACCTA
TTCCCAGGGTGCCTTGGGGGGGCATCTGCACGCGCTGGAGTGGGCCAAGG
CCAACGGCTGTCCTTGGGATGGTGGGCCATGGTTTGGAGGGATCTGCGCC
AGTGCTGCGGAAGGAGGGTACCTAGAGATCTTGAAGTGGGCCAGGGCCAA
CGGCTGCCCATGGGATACGAGGACCTGTTCAAATGCCGCGAAGGGTGGAC
ATCTGAATACCTTGAAGTGGGCCAGGAGCAAAGGTTGCCCCTGGGATGCA
AGGACTTGTCAACAAGCTGCTATCGGGGGACATCTGGACATTCTCAAGTA
TGCCAGGGCCAATGACTGCCCGTGGGATGAGTGGACCTTGTGCTGCGCTG
TTGAGTGTGGTCATCTTGACATCGTACAGTGGGCATTGGACAATGGCATC
CCTATGGTTGAGGGGATCTTTTCTCCAAGAGCAGCACTTCAATTTCGAGA
GTTGTTGTCCTCATACATGGCTGGAGGTCCTGCCTAGTGTGATCATCGAT
GTGTGGATGGCACGATATTGGCAATAGGTAGGGTGTATAATTTGTACTTA
TCGTCGTTCTTTGGTCTGGTATTTCTTTTTCAAAGGTTTTGTTACCCTGT
CCAGTTCAAATATTGATGTTTTCATAATGCAACTCTGGCAATGTGTCGGG
AGGCA
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Coding sequence (CDS) from alignment at C-tenellus_contig10416:1527..2731-

>mRNA_C-tenellus_contig10416.1.1 ID=mRNA_C-tenellus_contig10416.1.1|Name=mRNA_C-tenellus_contig10416.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=858bp|location=Sequence derived from alignment at C-tenellus_contig10416:1527..2731- (Choristocarpus tenellus KU2346)
ATGACTTGGGCTAAGGAATACGGTTGTCCATGGGATGAAAATATCTGTGC
AATGACGGCTGGGCGAGGTGATCTGTCCGTGCTAATCTACGCCAGAGCGG
AAGGTTGTCCATGGGATGCTCGGACCTGTGCGTATGCCGCAAGGGAGGGT
CAACTCGATACATTGAAGTGGGCCAGGGCGAACGGCTGTGCCTGGGATTC
AAGGACCTGTTCTTCAGCTGCTGGGGGAGGTCACCTGGAGGTGCTGAAGT
GGGTGAGAGTCAATGGCTGCCCATGGGGTGTGGGGACTTGCTCTCGTGCT
GCTCGAAGGGGACATCTGGATATTATGAAGTGGGTCAGGGCCAACGGTTG
TCCTTGGGACGGGACGACCTATTCCCAGGGTGCCTTGGGGGGGCATCTGC
ACGCGCTGGAGTGGGCCAAGGCCAACGGCTGTCCTTGGGATGGTGGGCCA
TGGTTTGGAGGGATCTGCGCCAGTGCTGCGGAAGGAGGGTACCTAGAGAT
CTTGAAGTGGGCCAGGGCCAACGGCTGCCCATGGGATACGAGGACCTGTT
CAAATGCCGCGAAGGGTGGACATCTGAATACCTTGAAGTGGGCCAGGAGC
AAAGGTTGCCCCTGGGATGCAAGGACTTGTCAACAAGCTGCTATCGGGGG
ACATCTGGACATTCTCAAGTATGCCAGGGCCAATGACTGCCCGTGGGATG
AGTGGACCTTGTGCTGCGCTGTTGAGTGTGGTCATCTTGACATCGTACAG
TGGGCATTGGACAATGGCATCCCTATGGTTGAGGGGATCTTTTCTCCAAG
AGCAGCACTTCAATTTCGAGAGTTGTTGTCCTCATACATGGCTGGAGGTC
CTGCCTAG
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