mRNA_C-tenellus_contig1040.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1040.1.1
Unique NamemRNA_C-tenellus_contig1040.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1040.1.1 vs. uniprot
Match: D8LEV4_ECTSI (C2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV4_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 9.720e-9
Identity = 40/88 (45.45%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:   61 ELVVGRTWSGSPKVVLRSLWRPLPHEKKRLERWQKKKIFGGS--FRGYKDWTDEHLRLLADEWEFCTAENWGGTTGLGSTYGSAGGLG 318
            E +VG+TWSG+P V+LRSL  P   E     RW ++   GG   F     WTD+ LRLLADEW  CT+   GG    G   G  GG G
Sbjct: 5393 ERIVGKTWSGAPAVILRSLRVPGRDEAACAARWLRENGEGGGGVFGDDDGWTDQRLRLLADEWTACTSA--GGMPDYGLASGGGGGPG 5478
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BLAST of mRNA_C-tenellus_contig1040.1.1 vs. uniprot
Match: A0A6H5KK33_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK33_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 6.100e-8
Identity = 34/68 (50.00%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   61 ELVVGRTWSGSPKVVLRSLWRPLPHEKKRLERWQKKKIFGGS--FRGYKDWTDEHLRLLADEWEFCTA 258
            E +VG+TWSGSP V+LRSL  P   E     RW +    GG   F     WTD+ LRLLADEW  CT+
Sbjct: 2685 ERIVGKTWSGSPAVILRSLRVPGRDEAVCAARWLRGNGEGGGGVFGDDDGWTDQRLRLLADEWRACTS 2752
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1040.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEV4_ECTSI9.720e-945.45C2 domain containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KK33_9PHAE6.100e-850.00C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1040contigC-tenellus_contig1040:1253..1694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEV4
PFAMsArfGap,C2
Model size442
Max annot lvl2759|Eukaryota
KEGG koko:K12486
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.59e-09
EggNOG OGsKOG1030@1|root,KOG1030@2759|Eukaryota
DescriptionGTPase activator activity
Cds size441
COG categoryDTZ
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789129.959055-CDS-C-tenellus_contig1040:1253..16941680789129.959055-CDS-C-tenellus_contig1040:1253..1694Choristocarpus tenellus KU2346CDSC-tenellus_contig1040 1254..1694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1040.1.1prot_C-tenellus_contig1040.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1040 1254..1694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1040.1.1

>prot_C-tenellus_contig1040.1.1 ID=prot_C-tenellus_contig1040.1.1|Name=mRNA_C-tenellus_contig1040.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=147bp
RTKCERKVPPVHSVSTPEQWELVVGRTWSGSPKVVLRSLWRPLPHEKKRL
ERWQKKKIFGGSFRGYKDWTDEHLRLLADEWEFCTAENWGGTTGLGSTYG
SAGGLGGKTGVTASGMEADAVTPHDYTGENTVSDVEGHHVNSKVKDR
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mRNA from alignment at C-tenellus_contig1040:1253..1694-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1040.1.1 ID=mRNA_C-tenellus_contig1040.1.1|Name=mRNA_C-tenellus_contig1040.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=442bp|location=Sequence derived from alignment at C-tenellus_contig1040:1253..1694- (Choristocarpus tenellus KU2346)
AGAACGAAGTGTGAGAGAAAGGTTCCCCCTGTACACTCTGTCTCTACACC
TGAGCAGTGGGAGTTGGTCGTAGGCCGAACGTGGTCGGGATCTCCGAAGG
TCGTCCTACGGTCCTTGTGGAGACCCTTACCACACGAAAAGAAAAGGTTG
GAACGTTGGCAAAAGAAAAAGATATTTGGTGGAAGCTTTCGGGGCTATAA
AGACTGGACTGATGAACATCTCCGCCTCCTAGCTGATGAATGGGAGTTCT
GCACTGCCGAAAATTGGGGAGGGACAACCGGTTTGGGCAGCACATATGGA
TCAGCAGGAGGTTTGGGCGGGAAAACAGGGGTGACAGCCTCCGGAATGGA
GGCAGATGCAGTAACCCCACATGATTACACTGGAGAGAATACAGTGAGTG
ATGTAGAGGGTCACCATGTGAATTCCAAGGTCAAGGATAGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig1040:1253..1694-

>mRNA_C-tenellus_contig1040.1.1 ID=mRNA_C-tenellus_contig1040.1.1|Name=mRNA_C-tenellus_contig1040.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=441bp|location=Sequence derived from alignment at C-tenellus_contig1040:1253..1694- (Choristocarpus tenellus KU2346)
AGAACGAAGTGTGAGAGAAAGGTTCCCCCTGTACACTCTGTCTCTACACC
TGAGCAGTGGGAGTTGGTCGTAGGCCGAACGTGGTCGGGATCTCCGAAGG
TCGTCCTACGGTCCTTGTGGAGACCCTTACCACACGAAAAGAAAAGGTTG
GAACGTTGGCAAAAGAAAAAGATATTTGGTGGAAGCTTTCGGGGCTATAA
AGACTGGACTGATGAACATCTCCGCCTCCTAGCTGATGAATGGGAGTTCT
GCACTGCCGAAAATTGGGGAGGGACAACCGGTTTGGGCAGCACATATGGA
TCAGCAGGAGGTTTGGGCGGGAAAACAGGGGTGACAGCCTCCGGAATGGA
GGCAGATGCAGTAACCCCACATGATTACACTGGAGAGAATACAGTGAGTG
ATGTAGAGGGTCACCATGTGAATTCCAAGGTCAAGGATAGG
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