Homology
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match:
D8LRW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRW0_ECTSI)
HSP 1 Score: 149 bits (376), Expect = 4.460e-41
Identity = 78/154 (50.65%), Postives = 106/154 (68.83%), Query Frame = 1
Query: 193 GILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHLILTEVQGERCSLDSLGEGYK---------------------NNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKDH 591
G+++S FQ+RVAA MAVE+EK+GKMKTRSLPSE++WSLSGSKN++ LQTFCV + LL+ AIG++E +L +L +++G+ C L+ LGEG + + RERLK LYKI+++EL + S+EDCVV RMAVKDH
Sbjct: 42 GLVLSVFQLRVAAAMAVEKEKAGKMKTRSLPSEMVWSLSGSKNITGTLQTFCVQEVDDADLLVAAIGIDEDDLRSVLADIKGQPCGLERLGEGLRPVDGGVGDGQQQXXXQRWQGGDASKWRERLKKLYKITEEELAVNSLEDCVVMRMAVKDH 195
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match:
Q4SDW1_TETNG ((spotted green pufferfish) hypothetical protein n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4SDW1_TETNG)
HSP 1 Score: 79.0 bits (193), Expect = 4.080e-14
Identity = 53/133 (39.85%), Postives = 82/133 (61.65%), Query Frame = 1
Query: 196 ILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAI--GMEEHELHLILTEVQGERCSLDSLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588
++V+ FQV VAA AV +K+GKMKTRSL SE+++SLS + N+S + F + DG+ ++L+V + G E L I T V GE+ ++ + +ER+K LYK++ E + ++ D VV RMA+KD
Sbjct: 71 MVVNGFQVLVAANRAVSLQKTGKMKTRSLYSEIIFSLSPTNNISEAFKRFGIS-DGDDSVLVVLVHGGDEPQLLSDIKTMVDGEQVPVEDISLLTD-----QERIKKLYKVTPQEEKCGTLLDAVVCRMAIKD 197
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match:
A0A5C6NG75_9TELE (EKC/KEOPS complex subunit n=3 Tax=Takifugu TaxID=31032 RepID=A0A5C6NG75_9TELE)
HSP 1 Score: 77.4 bits (189), Expect = 9.220e-14
Identity = 49/133 (36.84%), Postives = 84/133 (63.16%), Query Frame = 1
Query: 196 ILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLDSLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588
++V++FQV VAA AV +K+GKMKTRSL SE+++SLS + N+S + F + DG+ ++LLV + E+ L I + V G++ ++ + ++ +E++K YK++ E + ++ D VV RMA+KD
Sbjct: 47 MVVNSFQVLVAANKAVHLQKTGKMKTRSLYSEIIFSLSPTNNISEAFKRFGI-ADGDDSVLLVLVHSEDESQLLADIKSMVNGQQVPVEDV-----SSLTDQEKIKKFYKVTPQEEKCGTLLDAVVCRMAIKD 173
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match:
A0A665WYM0_ECHNA (TP53RK binding protein n=2 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665WYM0_ECHNA)
HSP 1 Score: 77.0 bits (188), Expect = 1.280e-13
Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 1
Query: 196 ILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLD---SLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588
+LVS FQV VAA AV +K GKMKTRSL SE++++LS + N+S + F + DG+ ++L+V + ++ HL I +V G + +D SL + K ++ LYK++ E + ++ D VV RMA+KD
Sbjct: 47 MLVSPFQVLVAANKAVHSQKIGKMKTRSLYSEIIFNLSPTNNISEAFKRFGI-ADGDESVLVVLVHNKDESHHLADITAQVDGLQVPVDEVSSLSDSAK--------IRKLYKVTPQEEKCGTLLDAVVCRMAIKD 173
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match:
A0A7K4KH16_9AVES (TPRKB protein (Fragment) n=9 Tax=Tinamidae TaxID=8803 RepID=A0A7K4KH16_9AVES)
HSP 1 Score: 74.7 bits (182), Expect = 3.260e-13
Identity = 50/132 (37.88%), Postives = 82/132 (62.12%), Query Frame = 1
Query: 199 LVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLDSLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588
+V FQV VAA AV K GKMKTR+L +E++++LS + N+S L+ F V D + +L+V I E ++L ++++V+G++ SLD L + E++K +YKI+ E ++ ++ D +V RMA KD
Sbjct: 3 IVDPFQVLVAANKAVHLHKIGKMKTRTLYTEVIFNLSPNNNISDALKKFGVS-DSDTAVLIVLIVDTEKPVNLEEVVSQVEGQQVSLDELPQLTDI-----EKVKKIYKITPQEEKIGTLLDSIVCRMATKD 128
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match:
A0A7L4DK25_9AVES (TPRKB protein (Fragment) n=1 Tax=Eurystomus gularis TaxID=325343 RepID=A0A7L4DK25_9AVES)
HSP 1 Score: 75.5 bits (184), Expect = 4.750e-13
Identity = 47/133 (35.34%), Postives = 80/133 (60.15%), Query Frame = 1
Query: 196 ILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLDSLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588
++V FQ+ VAA AV K GKMKTRSL +E+++SLS S N+S + F + D + +L+V + E ++L + ++V+G++ SLD L + R+K +YK++ E ++ ++ D +V RM+ KD
Sbjct: 47 MIVDPFQILVAANKAVHLHKIGKMKTRSLYAEIIFSLSPSNNISEAFKKFGIS-DSDTAVLIVLVADGEKTINLEDVTSQVEGQQVSLDELPQLTDTA-----RVKKMYKVTPQEEKIGTLLDSIVCRMSTKD 173
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match:
A0A7L2S1F9_9PASS (TPRKB protein (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7L2S1F9_9PASS)
HSP 1 Score: 73.9 bits (180), Expect = 6.160e-13
Identity = 47/132 (35.61%), Postives = 81/132 (61.36%), Query Frame = 1
Query: 199 LVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLDSLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588
+V FQ+ VAA AV +K GKMKTR+L +E+++SLS S N+S + F + DG+ +L+V + + ++L I ++V+G++ SLD L + ++K +YK++ E ++ ++ D VV RM+ KD
Sbjct: 2 IVDPFQILVAANKAVHLQKIGKMKTRTLYAEIIFSLSPSNNISDAFKKFGIS-DGDTAVLIVLVVDGDKSVNLADITSQVEGQQVSLDELPQLTDTA-----KVKKMYKVTPQEEKIGTLLDSVVCRMSTKD 127
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match:
A0A7L2VES5_9AVES (TPRKB protein (Fragment) n=1 Tax=Brachypteracias leptosomus TaxID=135165 RepID=A0A7L2VES5_9AVES)
HSP 1 Score: 75.1 bits (183), Expect = 6.590e-13
Identity = 46/133 (34.59%), Postives = 82/133 (61.65%), Query Frame = 1
Query: 196 ILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLDSLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588
++V FQV VAA AV K GKMKTR+L +E+++SLS S N+S + F + D + +L+V + E ++L + ++V+G++ SLD L + + R+K +YK++ E +++++ D +V R++ KD
Sbjct: 47 VIVDPFQVLVAANKAVHLHKIGKMKTRTLYAEIIFSLSPSNNISDAFKKFGIS-DSDTAVLIVLVADREKTVNLEDLASQVEGQQVSLDELPQLTDTD-----RVKKMYKVTPQEEKVSTLLDSIVCRISTKD 173
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match:
UPI001ED8648E (EKC/KEOPS complex subunit TPRKB n=2 Tax=Eupercaria TaxID=1489922 RepID=UPI001ED8648E)
HSP 1 Score: 74.7 bits (182), Expect = 9.730e-13
Identity = 50/136 (36.76%), Postives = 83/136 (61.03%), Query Frame = 1
Query: 196 ILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLD---SLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588
+LV++FQV VAA AV +K+GKMKTRSL SE++++LS + N+S + F + DG+ ++L+V + E+ L I V G++ ++ SL + +E++K LYK++ E + ++ D V+ RMA KD
Sbjct: 50 MLVNSFQVLVAANKAVNLQKNGKMKTRSLYSEIIFNLSPTNNISEAFKRFGIS-DGDESVLVVLVHNEDESQLLSDIAAMVNGQQVPVEDVPSLSD--------QEKIKKLYKVTPQEEKCGTLLDAVICRMATKD 176
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Match:
A0A7L1YPX0_9PASS (TPRKB protein (Fragment) n=6 Tax=Passeriformes TaxID=9126 RepID=A0A7L1YPX0_9PASS)
HSP 1 Score: 74.3 bits (181), Expect = 1.270e-12
Identity = 47/133 (35.34%), Postives = 81/133 (60.90%), Query Frame = 1
Query: 196 ILVSTFQVRVAATMAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLVAIGMEEHELHL--ILTEVQGERCSLDSLGEGYKNNGALRERLKGLYKISDDELEMASMEDCVVSRMAVKD 588
++V FQ+ VAA AV K GKMKTRSL +E+++SLS + N+S + F + D + +L+V + + ++L I ++V+G++ SLD L + R+K +YK++ E +++++ D VV RM+ KD
Sbjct: 47 MIVDPFQILVAANKAVHLHKIGKMKTRSLYAEIIFSLSPNNNISDAFKKFGIS-DSDTAVLIVLVVDSDKTVNLEAIASQVEGQQVSLDELAQLTDTA-----RIKKMYKVTPQEEKISTLLDSVVCRMSTKD 173
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10361.3.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 4.46e-41 / Id = 50.65 Expect = 4.08e-14 / Id = 39.85 Expect = 9.22e-14 / Id = 36.84 Expect = 1.28e-13 / Id = 38.24 Expect = 3.26e-13 / Id = 37.88 Expect = 4.75e-13 / Id = 35.34 Expect = 6.16e-13 / Id = 35.61 Expect = 6.59e-13 / Id = 34.59 Expect = 9.73e-13 / Id = 36.76 Expect = 1.27e-12 / Id = 35.34 Sequence D8LRW0_ECTSI Q4SDW1_TETNG A0A5C6NG75_9TELE A0A665WYM0_ECHNA A0A7K4KH16_9AVES A0A7L4DK25_9AVES A0A7L2S1F9_9PASS A0A7L2VES5_9AVES UPI001ED8648E A0A7L1YPX0_9PASS Pages
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Seed ortholog 2880.D8LRW0 Preferred name TPRKB PFAMs CGI-121 Model size 809 Max annot lvl 2759|Eukaryota KEGG rclass RC00141 KEGG ko ko:K08658,ko:K08869,ko:K15901 KEGG Reaction R09845 KEGG Pathway ko00900,ko01130,map00900,map01130 Hectar predicted targeting category other localisation GOs GO:0000408,GO:0000722,GO:0000723,GO:0002949,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006312,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0019219,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032200,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090342,GO:1901360,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 Exons 3 Evalue 1.95e-37 EggNOG OGs KOG4066@1|root,KOG4066@2759|Eukaryota Ec32 ortholog description CGI121/TPRKB Ec32 ortholog Ec-08_002650.3 Description tRNA processing Cds size 360 COG category K BRITE ko00000,ko00001,ko01000,ko01001,ko01002,ko03016
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789127.7166123-UTR-C-tenellus_contig10361:1172..1387 1680789127.7166123-UTR-C-tenellus_contig10361:1172..1387 Choristocarpus tenellus KU2346 UTR C-tenellus_contig10361 1173..1387 - 1680789127.7681174-UTR-C-tenellus_contig10361:2416..2650 1680789127.7681174-UTR-C-tenellus_contig10361:2416..2650 Choristocarpus tenellus KU2346 UTR C-tenellus_contig10361 2417..2650 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789127.7316463-CDS-C-tenellus_contig10361:1387..1627 1680789127.7316463-CDS-C-tenellus_contig10361:1387..1627 Choristocarpus tenellus KU2346 CDS C-tenellus_contig10361 1388..1627 - 1680789127.74431-CDS-C-tenellus_contig10361:1953..2032 1680789127.74431-CDS-C-tenellus_contig10361:1953..2032 Choristocarpus tenellus KU2346 CDS C-tenellus_contig10361 1954..2032 - 1680789127.7578263-CDS-C-tenellus_contig10361:2375..2416 1680789127.7578263-CDS-C-tenellus_contig10361:2375..2416 Choristocarpus tenellus KU2346 CDS C-tenellus_contig10361 2376..2416 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10361.3.1
>prot_C-tenellus_contig10361.3.1 ID=prot_C-tenellus_contig10361.3.1|Name=mRNA_C-tenellus_contig10361.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=120bp
MAVEREKSGKMKTRSLPSELMWSLSGSKNMSALLQTFCVPVDGEPTLLLV back to top mRNA from alignment at C-tenellus_contig10361:1173..2650-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10361.3.1 ID=mRNA_C-tenellus_contig10361.3.1|Name=mRNA_C-tenellus_contig10361.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1478bp|location=Sequence derived from alignment at C-tenellus_contig10361:1173..2650- (Choristocarpus tenellus KU2346)ATCCCTGCTTGACGCAGGTTGGCAATGATCGTGTCACCTGTCCCCTGATC
TCCATCCCCTCTCAACCAGCTAGCTCTCAGATGTGAGCTTCTTTTAGTAC
TCACTAGATTTCCCCAATCATAGCTTGGGATAGAATGTCACTACAGTGTG
GCTTGGCTCTCAGTATCAAGGTTGGTCCCAACCGCTTCCACAGGGATTCT
GGTGAGCACGTTTCAAGTCCGTGTCGCCGCCACC ATGGCAGTAGAGCGAG
AAAAATCTGGGAAGATGAAGACAAG GTAGGATGAAAGTGGGGGATTATCC
CAGCGTCGTTAGTATTGTGACTTTCTCTTTATGTCCTCGACTGCCTGTTG
GTACGAAGTATGCCGTGAGATGGGGTACGAATTATTTGTTGGGTGAAAGT
GCTGTGTACAGAAATGTTATGTCAGGGTAAAATAGTGCGCCTCAGCGTTC
ATTTTTTAATGGTGAAAGGTGTTGTCCTATTCAAGTAATCGATATAGTAA
CCACCGAGTTGCAACTTGGATGAGGAAATTGGAAGCCTACTGCTTTGAGT
TCAGGTATGGCAATTTCTGTACTAAATTGTGTCTCACAAGTCTTTACCAT
CCTGTGCTTTCGGTTCAGGTCTCTACCGTCGGAGCTAATGTGGTCGTTGT
CGGGCTCTAAAAATATGAGTGCTCTCTTGCAGACATTCTGTGTACCG GTG
AGCAGGAGTCCTGGGTTGTATCGCTAATCAGAGGAAAGTGGAAGTTGTAC
CAATTCACAGCACTATCTATCAGAGGAATATCTATTCGATTTTTTATCAG
CAGGAAGCATAAAGATGTGTGTGCATATCTCTCAAGATAGCAGGTATCAG
TACAGGAGGGTCATCTGGAATCTCAACCTCTTGAATCTGCCTATTCACAT
TTGATGATCGATCATTACTTCAAGCTTGCTATGGTTACCATTCCTTCCCC
ATGCACAGGCTGTGGATCCTATAATCACTACTTATACAAGTTGCCCTATG
ATCATTCTTTCCATTAATGTTAGGTGGATGGTGAGCCCACCCTTCTGTTG
GTGGCCATTGGCATGGAGGAACACGAATTGCATCTAATTCTTACAGAGGT
GCAAGGAGAACGTTGCAGCTTAGACTCGTTGGGGGAAGGCTATAAAAATA
ATGGTGCTCTCAGGGAAAGGTTAAAGGGGCTCTATAAAATATCTGATGAT
GAGCTGGAGATGGCAAGCATGGAGGACTGTGTGGTTTCCCGTATGGCAGT
GAAAGACCACTGA ATTGCTTCTAGATTCAATACATTGCAACTTTTCAGAC
TTAGGCATGTCATGCTCAACCAAAGGACTTTCTGTATTCCTATAGATACT
GATAACAGAGCTTTCCTCAAGTGCAAAACTAGGAGGGATGAATGAGATGA
TTTTTTGTGGATGTTGCGATAGGAATTGTGCATGCTTACTGGAAGATGGC
AAAAGATTTCCTGACTAGATGACTGACG back to top Coding sequence (CDS) from alignment at C-tenellus_contig10361:1173..2650-
>mRNA_C-tenellus_contig10361.3.1 ID=mRNA_C-tenellus_contig10361.3.1|Name=mRNA_C-tenellus_contig10361.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=360bp|location=Sequence derived from alignment at C-tenellus_contig10361:1173..2650- (Choristocarpus tenellus KU2346) back to top