mRNA_C-tenellus_contig10361.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10361.1.1
Unique NamemRNA_C-tenellus_contig10361.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10361.1.1 vs. uniprot
Match: A0A6H5KBH3_9PHAE (Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBH3_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.130e-25
Identity = 55/94 (58.51%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  151 AAELSVGRAGGGPVQLSFIHFPIDDMSPASNTADLAALVENLTDCVLSHTVTYIHCWGGRGRTGLIAACLLGALYPDLKAEEALTRVDEYFRLR 432
            AAE+ +G  G     L+F HFPI D+SPA NT  LA LV+ L   V S  V +IHCW GRGRTGLIA+CLLG LYP+L AE++L RVD Y+R R
Sbjct:  274 AAEVVLGARG--EEGLAFHHFPIPDLSPAENTEILAGLVDELEALVRSGKVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTR 365          
BLAST of mRNA_C-tenellus_contig10361.1.1 vs. uniprot
Match: R1BR51_EMIHU (Protein-tyrosine-phosphatase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BR51_EMIHU)

HSP 1 Score: 94.7 bits (234), Expect = 7.280e-20
Identity = 58/141 (41.13%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   13 QAEIPPQDKTSMWNQHGITTQS-QETSPSSISSVSGFQLYSEDAFSAAAELSVGRAGGGPVQLSFIHFPIDDMSPASNTADLAALVENLTDCVLSHTVTYIHCWGGRGRTGLIAACLLGALYPDLKAEEALTRVDEYFRLR 432
            +AE+PPQ++ + W   G+  QS    +P +      FQ Y  DA               P    F+HFPI D   A +   L  LV  L+   L   V YIHCWGGRGRTG++AACLLG+LY  + AEEAL RV     LR
Sbjct:  290 RAELPPQEEAAAWPPGGVAGQSGNAVAPQTAR----FQPYRADA---------------PEGAQFLHFPIPDRGVADSPEALDGLVSELSRRALDGQVLYIHCWGGRGRTGMVAACLLGSLYRYVGAEEALQRVQRCLSLR 411          
BLAST of mRNA_C-tenellus_contig10361.1.1 vs. uniprot
Match: A0A7S3T520_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3T520_9SPIT)

HSP 1 Score: 88.6 bits (218), Expect = 4.030e-19
Identity = 53/124 (42.74%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   13 QAEIPPQDKTSMWNQHGITTQSQETSPSSISSVSGFQLYSEDAFSAAAELSVGRAGGGPVQLSFIHFPIDDMSPASNTADLAALVENLTDCVLSHTVTYIHCWGGRGRTGLIAACLLGALYPDL 384
            QAE+PPQD +  +    +T Q         + + GF+ Y +DA  AA +         PV  SF+HF I+DM PA+   +L   VE+L   VL   V Y+HCWGG+GR GL+ ACLLG LYP+L
Sbjct:   75 QAELPPQDSSPSFG-GAMTWQ--------YAPILGFESYVQDATYAAFD---------PV--SFVHFGINDMQPANELDELEKFVEHLAARVLQGEVLYVHCWGGKGRAGLVCACLLGLLYPEL 178          
BLAST of mRNA_C-tenellus_contig10361.1.1 vs. uniprot
Match: R1E8P7_EMIHU (Protein-tyrosine-phosphatase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E8P7_EMIHU)

HSP 1 Score: 88.2 bits (217), Expect = 1.710e-18
Identity = 56/141 (39.72%), Postives = 75/141 (53.19%), Query Frame = 1
Query:   13 QAEIPPQDKTSMWNQHGITTQSQETSPSSISSVSGFQLYSEDAFSAAAELSVGRAGGGPVQLSFIHFPIDDMSPASNTADLAALVENLTDCVLSHTVTYIHCWGGRGRTGLIAACLLGALYPDLKAEEALTRVDEYFRLRS 435
            QAE+PPQD +++    G+           +  + G + Y+ DA +AA E            L F HF I DM PA + A L +LV  L   V +  V Y+HCWGG+GR GL+ ACLL  LY ++ AEEAL R   Y  LR+
Sbjct:   77 QAEVPPQDGSTVLG--GVA----------VEPLPGLEPYAADAAAAAPESP----------LKFAHFGIRDMHPADDVAALRSLVYELARRVRTGEVLYVHCWGGKGRAGLVCACLLAYLY-NIGAEEALVRTQVYCSLRN 194          
BLAST of mRNA_C-tenellus_contig10361.1.1 vs. uniprot
Match: A0A7S2JZQ2_9STRA (Protein-tyrosine-phosphatase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZQ2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.750e-18
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  202 FIHFPIDDMSPASNTADLAALVENLTDCVLS-HTVTYIHCWGGRGRTGLIAACLLGALYPDLK-AEEALTRVDEYFRLRS 435
            F+H+ I DM+ A +   L  +V +L D + + H V Y+HCWGG+GR GLI+ACLLG LYPD+K A+EAL R+  Y  +RS
Sbjct:    6 FVHYGIVDMNTAVSLESLIYVVLHLADRIRNKHEVIYMHCWGGKGRAGLISACLLGVLYPDIKDADEALERIQAYCNVRS 85          
BLAST of mRNA_C-tenellus_contig10361.1.1 vs. uniprot
Match: A0A7S0LRA0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LRA0_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 5.200e-16
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  202 FIHFPIDDMSPASNTADLAALVENLTDCVLSHTVTYIHCWGGRGRTGLIAACLLGALYPDLKAEEALTRVDEYFRLRS 435
            F+  PI+D+  A +   L   V  L D VL   V Y+HC+ GRGRTGL+AACLLG LY  +KA++AL RV  Y+RLR+
Sbjct:  222 FVRLPIEDLQAAPSVQWLVQNVYALGDRVLGGEVLYLHCFAGRGRTGLVAACLLGVLYNGMKADDALERVSAYYRLRA 299          
BLAST of mRNA_C-tenellus_contig10361.1.1 vs. uniprot
Match: F0Z7V7_DICPU (Protein-tyrosine-phosphatase n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z7V7_DICPU)

HSP 1 Score: 80.9 bits (198), Expect = 1.760e-15
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 1
Query:  118 FQLYSEDAFSAAAELSVGRAGGGPVQLSFIHFPIDDMSPASNTADLAALVENLTDCVLSHTVT--YIHCWGGRGRTGLIAACLLGALYPDLKAEEALTRVDEYFRLR 432
            F+ Y ED    A E  +G        ++FIHFPI+D   A N+ +LA L+E L + +        Y+HCW GRGRTG+++ACLLG LY  +   EAL R+ + ++ R
Sbjct:  113 FRPYREDILKLAKEKGIGED-----YITFIHFPIEDGGIAENSEELADLIERLLELLSKDKSNKIYLHCWAGRGRTGIVSACLLGRLY-QVSGLEALRRIQDCYQQR 213          
BLAST of mRNA_C-tenellus_contig10361.1.1 vs. uniprot
Match: D3BMS1_POLPP (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BMS1_POLPP)

HSP 1 Score: 77.4 bits (189), Expect = 1.520e-14
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  118 FQLYSEDAFSAAAELSVGRAGGGPVQLSFIHFPIDDMSPASNTADLAALVENLTDCVLSHTVTYIHCWGGRGRTGLIAACLLGALYPDLKAEEALTRVDEYFRLR 432
            F+ Y ED    AA+ ++        +L F+HFPI+D   A N  +L+  ++ L + + SH + Y+HCW GRGRTG+IAACLLG LY  +   EA  R+   +  R
Sbjct:   88 FRPYQEDLKQIAAKKNI--------ELEFLHFPIEDGGVAENLDELSDFIDLLIEKLKSHRI-YLHCWAGRGRTGIIAACLLGRLY-QVSGLEACRRIQACYEQR 182          
BLAST of mRNA_C-tenellus_contig10361.1.1 vs. uniprot
Match: Q55FR4_DICDI (Protein-tyrosine-phosphatase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55FR4_DICDI)

HSP 1 Score: 77.8 bits (190), Expect = 2.360e-14
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  118 FQLYSEDAFSAAAELSVGRAGGGPVQLSFIHFPIDDMSPASNTADLAALVENLTDCVLSHTVTYIHCWGGRGRTGLIAACLLGALYPDLKAEEALTRVDEYFRLR 432
            F+ Y ED    + E  +         ++F+HFPI+D   A N  DL  L+E L + +      Y+HCW GRGRTG+I ACLLG LY  +   EAL R  + ++ R
Sbjct:  129 FRPYREDILKLSKEKGIDVDS-----VTFVHFPIEDGGIAENNEDLVDLIERLLNLLSLDNKVYLHCWAGRGRTGIIGACLLGRLY-QVTGLEALRRTQDCYQQR 227          
BLAST of mRNA_C-tenellus_contig10361.1.1 vs. uniprot
Match: A0A7S3AE84_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AE84_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 4.880e-14
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1
Query:  307 YIHCWGGRGRTGLIAACLLGALYPDLKAEEALTRVDEYFRLR 432
            Y+HCWGGRGRTGLIAACLLGALY D++AEE+L RV  Y+ LR
Sbjct:    2 YLHCWGGRGRTGLIAACLLGALYGDMEAEESLQRVQCYYDLR 43          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10361.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBH3_9PHAE3.130e-2558.51Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus Ta... [more]
R1BR51_EMIHU7.280e-2041.13Protein-tyrosine-phosphatase n=1 Tax=Emiliania hux... [more]
A0A7S3T520_9SPIT4.030e-1942.74Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
R1E8P7_EMIHU1.710e-1839.72Protein-tyrosine-phosphatase n=2 Tax=Emiliania hux... [more]
A0A7S2JZQ2_9STRA5.750e-1851.25Protein-tyrosine-phosphatase n=1 Tax=Leptocylindru... [more]
A0A7S0LRA0_9EUKA5.200e-1651.28Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
F0Z7V7_DICPU1.760e-1540.19Protein-tyrosine-phosphatase n=1 Tax=Dictyostelium... [more]
D3BMS1_POLPP1.520e-1440.00TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
Q55FR4_DICDI2.360e-1439.05Protein-tyrosine-phosphatase n=1 Tax=Dictyostelium... [more]
A0A7S3AE84_9EUKA4.880e-1476.19Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10361contigC-tenellus_contig10361:187..657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRV7
PFAMsCDKN3
Model size471
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.29e-26
EggNOG OGs2BVII@1|root,2S80H@2759|Eukaryota
Ec32 ortholog descriptionProtein-tyrosine phosphatase-like
Ec32 orthologEc-08_002600.1
DescriptionCyclin-dependent kinase inhibitor 3 (CDKN3)
Cds size471
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.675557-CDS-C-tenellus_contig10361:186..6571680789127.675557-CDS-C-tenellus_contig10361:186..657Choristocarpus tenellus KU2346CDSC-tenellus_contig10361 187..657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10361.1.1prot_C-tenellus_contig10361.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10361 187..657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10361.1.1

>prot_C-tenellus_contig10361.1.1 ID=prot_C-tenellus_contig10361.1.1|Name=mRNA_C-tenellus_contig10361.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=157bp
ILPCQAEIPPQDKTSMWNQHGITTQSQETSPSSISSVSGFQLYSEDAFSA
AAELSVGRAGGGPVQLSFIHFPIDDMSPASNTADLAALVENLTDCVLSHT
VTYIHCWGGRGRTGLIAACLLGALYPDLKAEEALTRVDEYFRLRSGQHGQ
GGGTEER
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mRNA from alignment at C-tenellus_contig10361:187..657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10361.1.1 ID=mRNA_C-tenellus_contig10361.1.1|Name=mRNA_C-tenellus_contig10361.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=471bp|location=Sequence derived from alignment at C-tenellus_contig10361:187..657+ (Choristocarpus tenellus KU2346)
ATCCTTCCTTGTCAGGCAGAGATACCCCCTCAAGATAAAACTTCCATGTG GAATCAGCATGGTATCACGACTCAATCCCAAGAGACTTCTCCCAGCAGCA TCTCCTCAGTATCAGGCTTCCAATTATACAGTGAGGATGCCTTCTCAGCA GCTGCTGAACTGTCTGTTGGTCGAGCAGGTGGAGGACCAGTACAGCTGTC CTTCATACATTTCCCAATTGACGACATGAGCCCAGCGTCCAACACAGCAG ATCTAGCTGCCCTGGTCGAGAACTTGACAGATTGTGTACTGTCTCATACG GTCACATACATTCACTGCTGGGGGGGGCGAGGACGAACAGGTCTCATAGC TGCTTGCCTTCTTGGTGCACTATACCCAGATCTGAAGGCTGAGGAGGCGT TGACCAGAGTTGATGAATACTTTAGATTGAGGTCAGGGCAGCATGGTCAA GGGGGGGGGACAGAAGAGAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10361:187..657+

>mRNA_C-tenellus_contig10361.1.1 ID=mRNA_C-tenellus_contig10361.1.1|Name=mRNA_C-tenellus_contig10361.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=471bp|location=Sequence derived from alignment at C-tenellus_contig10361:187..657+ (Choristocarpus tenellus KU2346)
ATCCTTCCTTGTCAGGCAGAGATACCCCCTCAAGATAAAACTTCCATGTG
GAATCAGCATGGTATCACGACTCAATCCCAAGAGACTTCTCCCAGCAGCA
TCTCCTCAGTATCAGGCTTCCAATTATACAGTGAGGATGCCTTCTCAGCA
GCTGCTGAACTGTCTGTTGGTCGAGCAGGTGGAGGACCAGTACAGCTGTC
CTTCATACATTTCCCAATTGACGACATGAGCCCAGCGTCCAACACAGCAG
ATCTAGCTGCCCTGGTCGAGAACTTGACAGATTGTGTACTGTCTCATACG
GTCACATACATTCACTGCTGGGGGGGGCGAGGACGAACAGGTCTCATAGC
TGCTTGCCTTCTTGGTGCACTATACCCAGATCTGAAGGCTGAGGAGGCGT
TGACCAGAGTTGATGAATACTTTAGATTGAGGTCAGGGCAGCATGGTCAA
GGGGGGGGGACAGAAGAGAGG
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