mRNA_C-tenellus_contig10360.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10360.2.1
Unique NamemRNA_C-tenellus_contig10360.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10360.2.1 vs. uniprot
Match: A0A6H5KD48_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD48_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.370e-18
Identity = 58/98 (59.18%), Postives = 64/98 (65.31%), Query Frame = 3 
Query:  165 MNDRLSELTGGSGGGGRGGVNPFEVAIDINDYGEAPSKAEDG--AFMQGFFDTVNEVKKDIDSIKKACKDLDTLTQQATLTSSATAEADAKAQIHETI 452
            MNDRL ELTGG        V PFE+A                   FM+GFFD VN VKKDID++KKAC DLDTLTQQATLTSSAT EADAK+QI+ TI
Sbjct:    1 MNDRLGELTGGXXXXXX--VAPFEIAXXXXXXXXXXXXXXXXXXGFMEGFFDKVNAVKKDIDAVKKACTDLDTLTQQATLTSSATVEADAKSQINTTI 96
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10360.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KD48_9PHAE4.370e-1859.18t-SNARE coiled-coil homology domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10360contigC-tenellus_contig10360:344..1665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5P2
Preferred nameSYP111
PFAMsSNARE,Syntaxin
Model size1036
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K02201,ko:K03321,ko:K04560,ko:K08486,ko:K14411
KEGG TC2.A.53.3
KEGG ReactionR03035
KEGG Pathwayko00770,ko01100,ko03015,ko04130,ko04721,ko04911,ko05031,map00770,map01100,map03015,map04130,map04721,map04911,map05031
KEGG ModuleM00120
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000149,GO:0000902,GO:0000904,GO:0001101,GO:0001505,GO:0003006,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005802,GO:0005886,GO:0005911,GO:0006605,GO:0006612,GO:0006810,GO:0006833,GO:0006836,GO:0006886,GO:0006887,GO:0006904,GO:0006906,GO:0006950,GO:0006952,GO:0006996,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007610,GO:0007611,GO:0007613,GO:0007614,GO:0008104,GO:0008150,GO:0009266,GO:0009409,GO:0009504,GO:0009506,GO:0009524,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010033,GO:0010119,GO:0010148,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0017156,GO:0022406,GO:0022414,GO:0023052,GO:0023061,GO:0030054,GO:0030133,GO:0030154,GO:0031201,GO:0031224,GO:0031347,GO:0031348,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032507,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033993,GO:0034613,GO:0040007,GO:0042044,GO:0042221,GO:0042886,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043495,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045055,GO:0045184,GO:0045185,GO:0046903,GO:0046907,GO:0048278,GO:0048284,GO:0048468,GO:0048489,GO:0048519,GO:0048583,GO:0048585,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050794,GO:0050832,GO:0050877,GO:0050890,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051651,GO:0051656,GO:0051704,GO:0051707,GO:0055044,GO:0060560,GO:0061024,GO:0061025,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072658,GO:0072659,GO:0072660,GO:0080134,GO:0090150,GO:0090174,GO:0097305,GO:0097479,GO:0097480,GO:0097708,GO:0098542,GO:0098791,GO:0098796,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140029,GO:0140056,GO:1901700,GO:1990778
Exons2
Evalue5.41e-20
EggNOG OGsCOG5074@1|root,KOG0810@2759|Eukaryota
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-12_008590.1
EC2.7.7.3
DescriptionSNAP receptor activity
Cds size333
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.6028187-UTR-C-tenellus_contig10360:343..8821680789127.6028187-UTR-C-tenellus_contig10360:343..882Choristocarpus tenellus KU2346UTRC-tenellus_contig10360 344..882 -
1680789127.6404536-UTR-C-tenellus_contig10360:1501..16651680789127.6404536-UTR-C-tenellus_contig10360:1501..1665Choristocarpus tenellus KU2346UTRC-tenellus_contig10360 1502..1665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.6133306-CDS-C-tenellus_contig10360:882..10231680789127.6133306-CDS-C-tenellus_contig10360:882..1023Choristocarpus tenellus KU2346CDSC-tenellus_contig10360 883..1023 -
1680789127.6216068-CDS-C-tenellus_contig10360:1309..15011680789127.6216068-CDS-C-tenellus_contig10360:1309..1501Choristocarpus tenellus KU2346CDSC-tenellus_contig10360 1310..1501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10360.2.1prot_C-tenellus_contig10360.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10360 883..1501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10360.2.1

>prot_C-tenellus_contig10360.2.1 ID=prot_C-tenellus_contig10360.2.1|Name=mRNA_C-tenellus_contig10360.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=111bp
MNDRLSELTGGSGGGGRGGVNPFEVAIDINDYGEAPSKAEDGAFMQGFFD
TVNEVKKDIDSIKKACKDLDTLTQQATLTSSATAEADAKAQIHETITRLS
VLTLCILFTL*
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mRNA from alignment at C-tenellus_contig10360:344..1665-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10360.2.1 ID=mRNA_C-tenellus_contig10360.2.1|Name=mRNA_C-tenellus_contig10360.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1322bp|location=Sequence derived from alignment at C-tenellus_contig10360:344..1665- (Choristocarpus tenellus KU2346)
GCACAACGGTGTTGTGCAGTATCCAGTGCAAGGGAAGGTTATTTCCTCTA
CGTCAACTTAGTGTTGATCATTGTGACAGCGAATTGAAATAGTGAAGTGT
TACAGTTGGATAATTGTACCTTTTCTTGATGGGCAAGTAAGACTGGTAGG
TGAGCAAGGGCGGTATGAACGATCGTCTATCAGAGCTCACTGGGGGTTCA
GGAGGGGGGGGAAGAGGTGGAGTGAACCCTTTCGAGGTCGCTATAGACAT
AAATGACTACGGAGAGGCACCTTCAAAAGCAGAAGATGGTGCGTTTATGC
AGGGATTCTTCGACACTGTCAACGAGGTCAAGAAGGACATCGATAGCATC
AAGAAGGTAAGGTAAACCGGTGAATTGGGGGTAATTCCCCTCGAACAGGG
TCAGTTTCGAGTTTCGAACGCGGTGTGCATGGGTATTTCGCGCGTCAATC
TACACAAAACCACAAACCCACAAGACGAGCCAAATAATCAACCCCCAGAA
ACCTTACCTCAAGCTTTTCCCAACTCTGGGTAGCTCTAACGTAATGTACG
TTCAAGATGTGTCGATAATATGCAGTGCGCCACAAGGTCAAATGTCTGAA
ACCATTCGAACATGCTGTGGATGGATACTCACTATTACACAGGCATGCAA
GGACCTCGATACGTTGACACAACAAGCCACCCTGACCTCAAGTGCCACAG
CGGAGGCCGATGCCAAGGCTCAGATCCATGAGACAATAACAAGGTTGAGT
GTCCTAACCCTATGCATCCTCTTCACTCTCTAATATTTCGCTTGCTGTAT
ACTCATTTCCTTGTGTGTTGTGCAAAGGTCGGAGATAAGCCCGTGACTAC
ACATGCACAGGGTGGTCGCGAATATGGTGTGTTATGCTCATGAGCTGTTA
GTCCGTGACTGTCCCATATCCCTAGCCACTCTCCACGGATTTGGATTCAG
TTTTAGTTTTTCAGTTTTGTGTCAATCTCCCCGATTTTCCCTCTTATCTC
CAAGTTCCGAGTAAGCTAAGGCTCGAGAATGGTTCCTTCGACGGTTATTG
TAGACATACGGTGAGGGGGGCTTCATTCTGAACGCATCTCCCACGGTATG
GATTGGGTGACAACATATTTCCTTCCTCACTCCTTATTCACGCTCCTGCT
TTGAAGAAGAATGCTGCAGTATATGATTGCGTGGTGGGCTCAGTGTCAAC
CCGCCTGCAGATGCATTTCTGGGAAGAAGTAACAAAAAACCCCTGTGTTA
AAAAAGTGAAATAACTTGCAGAGGGAAAGAAATCTTGCAAAACGCCTTCC
CCCTATAACTGAAACAGATACA
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Coding sequence (CDS) from alignment at C-tenellus_contig10360:344..1665-

>mRNA_C-tenellus_contig10360.2.1 ID=mRNA_C-tenellus_contig10360.2.1|Name=mRNA_C-tenellus_contig10360.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=333bp|location=Sequence derived from alignment at C-tenellus_contig10360:344..1665- (Choristocarpus tenellus KU2346)
ATGAACGATCGTCTATCAGAGCTCACTGGGGGTTCAGGAGGGGGGGGAAG
AGGTGGAGTGAACCCTTTCGAGGTCGCTATAGACATAAATGACTACGGAG
AGGCACCTTCAAAAGCAGAAGATGGTGCGTTTATGCAGGGATTCTTCGAC
ACTGTCAACGAGGTCAAGAAGGACATCGATAGCATCAAGAAGGCATGCAA
GGACCTCGATACGTTGACACAACAAGCCACCCTGACCTCAAGTGCCACAG
CGGAGGCCGATGCCAAGGCTCAGATCCATGAGACAATAACAAGGTTGAGT
GTCCTAACCCTATGCATCCTCTTCACTCTCTAA
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