mRNA_C-tenellus_contig10359.2.8 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10359.2.8
Unique NamemRNA_C-tenellus_contig10359.2.8
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A6B2LCC5_9EUKA (RING-type domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LCC5_9EUKA)

HSP 1 Score: 209 bits (533), Expect = 1.010e-61
Identity = 104/245 (42.45%), Postives = 156/245 (63.67%), Query Frame = 3
Query:  234 LECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQVEDLNDDPVNEESMSSVNRLHSVLRMLAPNLLGRLEVGCSGLSPLHGFCRKLPPKARF 968
            ++C +C+N++ EPI++ CGHTFCR C V A QR+QKKCP CRAV +  A +Q++NV +A+I + C+P Q  +RL E +E ++  KQ+ PIF++N  +FPG  L LH+FE RYK+M+ R++  +RKF Y+PN+TN++ + GDV + A+V  C FL DGR LLQARI+ R  + +S VE  T  L +CQ E   D+P N++ +  +        ++  NL          L    GF ++L P  +F
Sbjct:    1 MDCTICLNMLVEPISVPCGHTFCRTCLVAAQQRAQKKCPVCRAVCVIDATAQKENVQLASILKTCFPKQYAERLKEVEETKKTWKQNLPIFFFNDTLFPGGVLKLHLFEERYKLMIKRVLEGNRKFVYLPNFTNYKASKGDVGVVAEVLECRFLHDGRALLQARIVERAVVADSWVEDGTGNLAYCQYELFKDEPENDDQLQEL--------LVTANL---------SLERFKGFVQRLEPIRQF 228          
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A6V3MPG8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3MPG8_9EUKA)

HSP 1 Score: 209 bits (532), Expect = 4.290e-61
Identity = 107/221 (48.42%), Postives = 153/221 (69.23%), Query Frame = 3
Query:  201 ACHSTSVPISMLECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQ----VEDLNDDPVNEESMSSVNR 851
            A  S S+   ML C +C+NLVC+PIT+ CGHTFCR+C   A+QRS+KKCP+CRAV      S   NVM+A I Q C+P Q EQRLLE+++E+ + + + PIF+YN  +FPG  L LH+FE RY+ M++R ++++RKF Y+PN+T+++   GDV L A +  C+FL DGR LL+A I  R K+ N+ VE  T GL +CQ    VE+  D  V+EE +++V++
Sbjct:   22 ASSSASIEADMLTCPLCLNLVCQPITVPCGHTFCRVCLYMAMQRSKKKCPNCRAVCHVEPASHAVNVMLAQIAQKCFPKQYEQRLLESKQEQEKFESTSPIFFYNNCLFPGCLLHLHLFEQRYRHMINRCVSSNRKFIYLPNFTDYKAKTGDVGLLAYIDECEFLPDGRALLKATIQKRVKVTNTWVEEGTQGLHYCQFHPYVEE--DKTVDEEELNAVHK 240          
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A482RY16_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY16_9ARCH)

HSP 1 Score: 203 bits (517), Expect = 1.780e-59
Identity = 97/220 (44.09%), Postives = 143/220 (65.00%), Query Frame = 3
Query:  234 LECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQVEDLNDDPVNEESMSSVNRLHSVLRMLAPNLLG 893
            L+C +C++LVCEPI++ CGHTFCR+C V A++R +K+CP+CR V    A++  +N+M+  +     P     RLLE + E+      +PIFYYN  +FPG+KL+L +FEPRYK+M+ RI+ T+R F YVPN+TN+    GDV L  ++   +FL DGR LL+  ++SRQ+I   +VE  T GL +C++E L DD + E+     + L   LR L  +L G
Sbjct:   37 LDCSLCLSLVCEPISISCGHTFCRVCLVKALRRHKKQCPTCREVCHVSAENAAENIMVKTLAMALDPETYRSRLLEAEGEKSSWTALYPIFYYNSILFPGNKLSLVLFEPRYKLMMRRIIDTTRSFAYVPNFTNYHARVGDVALVVELKEVEFLADGRCLLEGLLVSRQRIAEHYVEQGTQGLHYCRLESLRDDGLGEQRRQQADYLSQQLRTLLASLGG 256          
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A7S0CSC1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CSC1_9EUKA)

HSP 1 Score: 195 bits (495), Expect = 1.050e-55
Identity = 98/228 (42.98%), Postives = 148/228 (64.91%), Query Frame = 3
Query:  210 STSVPISMLECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQVE--DLNDDPVNEESMSSVNRLHSVLRMLAPNL 887
            ST +   ML+C +C+ +VCEPIT+ CGHTFCR C   A+QR++KKCP+CRAV      S   NVM+ANI Q C+P + ++R  E +  +++ + + PIF+YN  +FPG  L LH+FE RY+ M++R ++++R+F Y+PN+++++   GDV L A V  C+FL DGR LL+A ++ R  I NS VE  T GL +CQ +  +  D  V E  +  ++   +V+   AP L
Sbjct:   22 STRIEQDMLQCSLCLGIVCEPITIPCGHTFCRSCLYLAMQRTKKKCPNCRAVCHVDPSSHSVNVMLANIAQKCFPKEYKKRAEECKALKQKFQTTLPIFFYNNCLFPGCLLHLHLFEQRYRHMINRCVSSNRQFLYLPNFSDYKATAGDVGLLAYVDECEFLSDGRALLKATLVKRVVITNSWVEEGTQGLHYCQYQAYEETDKTVKEADVKEIHAKVNVILQSAPGL 249          
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A835ZAH9_9STRA (PUA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAH9_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.090e-55
Identity = 99/226 (43.81%), Postives = 144/226 (63.72%), Query Frame = 3
Query:  306 LCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQVEDLNDDPVNEESMSSVNRLHSVLRMLAPNLLGRLEVGCSGLSPLHGFCRKLPPKARFQRSSV 983
            +C V  + R++K+CP+CRAV  +CA  Q +NVM+A I +  +P    +RL ETQ E+  L+   PIFYYN+PMFPG+ L+LH+FEPRY++M+ RI+ T+R+F YVPNYTN++ + GDV L A+V  CDF  DGR  L A ++ R +I + +VE  THGL +CQ+E L D+P+       V  L   +     ++LG +    S +   HG   ++PP AR Q  S+
Sbjct:    1 MCLVKTLTRTKKRCPTCRAVCHNCAQDQPENVMVAQIARAAFPQLYLERLRETQTEKAALRSIHPIFYYNVPMFPGEILSLHLFEPRYRLMMRRIIDTTRRFVYVPNYTNYEASIGDVALIAEVKDCDFQSDGRCYLSATLIGRSRITDHYVEDGTHGLNYCQLETLVDEPIQPHEARFVTTLVQPIANFVSSVLGPIH---SDVVKTHG---EMPPVAREQEFSL 220          
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A6V3MRR6_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3MRR6_9EUKA)

HSP 1 Score: 189 bits (479), Expect = 1.190e-54
Identity = 92/182 (50.55%), Postives = 129/182 (70.88%), Query Frame = 3
Query:  201 ACHSTSVPISMLECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKI 746
            A  S S+   ML C +C+NLVC+PIT+ CGHTFCR+C   A+QRS+KKCP+CRAV      S   NVM+A I Q C+P Q EQRLLE+++E+ + + + PIF+YN  +FPG  L LH+FE RY+ M++R ++++RKF Y+PN+T+++   GDV L A +  C+FL DGR LL+A I  R K+
Sbjct:   22 ASSSASIEADMLTCPLCLNLVCQPITVPCGHTFCRVCLYMAMQRSKKKCPNCRAVCHVEPASHAVNVMLAQIAQKCFPKQYEQRLLESKQEQEKFESTSPIFFYNNCLFPGCLLHLHLFEQRYRHMINRCVSSNRKFIYLPNFTDYKAKTGDVGLLAYIDECEFLPDGRALLKATIQKRVKV 203          
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A4D9DDG8_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDG8_9STRA)

HSP 1 Score: 189 bits (481), Expect = 6.480e-53
Identity = 97/217 (44.70%), Postives = 142/217 (65.44%), Query Frame = 3
Query:  234 LECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKILNS-HVELDTHGLQFCQVEDLNDD-PVNEESMSSVNRLHSVLRMLA 878
            LECGVC+ L+CE +T  CGH+ CRLC V A+QR Q KCP CRAV +  A+   +  ++  + +  +P   EQRL ET++ER  LK   PIF+YNLP+FPG+ L LH+FEPRY++M+ RI+  SR+F YVPNY+N++   GD+ L A++    F+ DGR  L+ARI  R  I    +VE  T GL +C++++L D+ P + E+  ++ +     R +A
Sbjct:   94 LECGVCLGLLCEAVTTPCGHSLCRLCLVRALQR-QTKCPVCRAVCMINAEDHAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVPNYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDESPKSAEASQALRQASEKAREMA 309          
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A6H5KHS7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS7_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 2.360e-50
Identity = 96/251 (38.25%), Postives = 148/251 (58.96%), Query Frame = 3
Query:  174 TAKRPRSKKACHSTSVPISMLECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAV--SLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYV-----PNYTNFQVANGD----VLLKADVCHCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQVEDLNDDPVNEESMSSVNRLHSVLRMLAPNLLG 893
            +A++ ++K       +  S L C  C+ L+ EP++L CGHTFCR+C V  ++R  K+CPSC A   +   A+ Q QNVM+A I +  +P  LE+RL ET+ E+ + +   P F+Y++P+FPG  L +H FEPRYK+M+ RI+ TSR+F YV     P+ TN    N D    + L+A VC  +FL D RV+++ ++  R  ++   VE  T  L +CQ+E  +DDP+ E     +  LH+  + +    LG
Sbjct:    7 SARQAKAKDGEQQQQLCASCLACPACLQLLAEPVSLPCGHTFCRVCLVKELRRKPKECPSCHATCHTRQVAEDQPQNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYSVPVFPGQTLCVHFFEPRYKLMMQRIINTSRRFAYVLPAPVPS-TNDDDRNTDQQGRIALEAHVCEAEFLSDDRVMVKIKLAGRHTVVEDFVEAGTGNLHYCQLEPFDDDPLQEGGAGELTDLHTRAKTICNGFLG 256          
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: A0A6U2J5U5_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2J5U5_HEMAN)

HSP 1 Score: 175 bits (444), Expect = 1.830e-48
Identity = 82/205 (40.00%), Postives = 131/205 (63.90%), Query Frame = 3
Query:  219 VPISMLECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVCHCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQVEDLNDDPVNEES 833
            + +SMLEC VC+ L+CEP+T  CGH+FCR C V  +++++KKCPSCRA+     ++  + + ++++ +  +P   +QR+LE Q E+       PIF+YN  +FP   L L++FEPRYK+M+ RI+ +SR+F Y+P +  +Q   GD+ + A++   +FL DGR  LQA+   R  I  + +E  T GL +C+V+ +ND     ES
Sbjct:    9 IEVSMLECSVCLQLLCEPVTTPCGHSFCRPCLVGTLRKNKKKCPSCRAICQIEPETHSETIALSSVAKAVFPKAYQQRILEVQAEKASWDTILPIFFYNDTLFPFSPLALNLFEPRYKVMLHRIVESSRRFAYLPKFDTYQANVGDMGVIAEITDIEFLADGRAHLQAKCRDRFTIKEAWIEDGTQGLHWCKVDLVNDGVSASES 213          
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Match: D8LDP9_ECTSI (Kinase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP9_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.150e-44
Identity = 70/144 (48.61%), Postives = 106/144 (73.61%), Query Frame = 3
Query:  177 AKRPRSKKACHSTSVPISMLECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCADSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFPGDKLTLHIFEPRYKIMVDRIMTTSRK 608
            +K P+  +A  + ++P++ LEC VC+ LVCEP++L CGH+FCR+C V  ++R++KKCP+CRAV  + A+ Q ++VM+ANI + C+P     RL E + ER +     P+FYYN+PMFPG+ L LH+FEPRYK+M+ R++ TSR+
Sbjct:   18 SKTPQGGRAGGTATLPLAALECAVCLFLVCEPVSLSCGHSFCRVCLVNTLRRNKKKCPTCRAVCHNSAEDQPEDVMLANIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRR 161          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10359.2.8 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B2LCC5_9EUKA1.010e-6142.45RING-type domain-containing protein n=1 Tax=Arcell... [more]
A0A6V3MPG8_9EUKA4.290e-6148.42Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A482RY16_9ARCH1.780e-5944.09RING-type domain-containing protein n=1 Tax=archae... [more]
A0A7S0CSC1_9EUKA1.050e-5542.98Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A835ZAH9_9STRA1.090e-5543.81PUA-like domain-containing protein n=1 Tax=Tribone... [more]
A0A6V3MRR6_9EUKA1.190e-5450.55Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A4D9DDG8_9STRA6.480e-5344.70RING-type domain-containing protein n=2 Tax=Monodo... [more]
A0A6H5KHS7_9PHAE2.360e-5038.25RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6U2J5U5_HEMAN1.830e-4840.00Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
D8LDP9_ECTSI1.150e-4448.61Kinase, putative n=1 Tax=Ectocarpus siliculosus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10359contigC-tenellus_contig10359:1894..5594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog227086.JGI_V11_77332
PFAMsGlyco_transf_92,zf-C3HC4,zf-C3HC4_2
Model size1172
Max annot lvl2759|Eukaryota
KEGG koko:K20779
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000151,GO:0000209,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0003674,GO:0003682,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006302,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006955,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010212,GO:0010390,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016064,GO:0016444,GO:0016445,GO:0016447,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019724,GO:0019787,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031491,GO:0031593,GO:0031974,GO:0031981,GO:0032182,GO:0032446,GO:0032501,GO:0032502,GO:0032784,GO:0032785,GO:0032879,GO:0032880,GO:0032991,GO:0033522,GO:0033554,GO:0034243,GO:0034244,GO:0034641,GO:0034644,GO:0035518,GO:0035861,GO:0036211,GO:0036351,GO:0036352,GO:0042113,GO:0042393,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045190,GO:0045321,GO:0045739,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046649,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051276,GO:0051603,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070530,GO:0070534,GO:0070535,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0104004,GO:0140030,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:1990234,GO:1990391,GO:2000112,GO:2000113,GO:2001020,GO:2001022,GO:2001141
Exons6
Evalue2.71e-46
EggNOG OGsCOG2802@1|root,KOG4159@2759|Eukaryota
Ec32 ortholog descriptionPeptidase S16, lon N-terminal
Ec32 orthologEc-14_003520.1
EC2.3.2.31
Descriptionhistone H2A-K13 ubiquitination
Cds size825
COG categoryI
BRITEko00000,ko01000,ko03400,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10359.2.8prot_C-tenellus_contig10359.2.8Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10359 2124..5477 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.3182805-UTR-C-tenellus_contig10359:1893..21231680789127.3182805-UTR-C-tenellus_contig10359:1893..2123Choristocarpus tenellus KU2346UTRC-tenellus_contig10359 1894..2123 +
1680789127.3879514-UTR-C-tenellus_contig10359:5477..55941680789127.3879514-UTR-C-tenellus_contig10359:5477..5594Choristocarpus tenellus KU2346UTRC-tenellus_contig10359 5478..5594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.332085-CDS-C-tenellus_contig10359:2123..22691680789127.332085-CDS-C-tenellus_contig10359:2123..2269Choristocarpus tenellus KU2346CDSC-tenellus_contig10359 2124..2269 +
1680789127.3401978-CDS-C-tenellus_contig10359:2419..25531680789127.3401978-CDS-C-tenellus_contig10359:2419..2553Choristocarpus tenellus KU2346CDSC-tenellus_contig10359 2420..2553 +
1680789127.3521285-CDS-C-tenellus_contig10359:3340..34371680789127.3521285-CDS-C-tenellus_contig10359:3340..3437Choristocarpus tenellus KU2346CDSC-tenellus_contig10359 3341..3437 +
1680789127.3605275-CDS-C-tenellus_contig10359:4124..41941680789127.3605275-CDS-C-tenellus_contig10359:4124..4194Choristocarpus tenellus KU2346CDSC-tenellus_contig10359 4125..4194 +
1680789127.3685133-CDS-C-tenellus_contig10359:4649..47211680789127.3685133-CDS-C-tenellus_contig10359:4649..4721Choristocarpus tenellus KU2346CDSC-tenellus_contig10359 4650..4721 +
1680789127.3796208-CDS-C-tenellus_contig10359:5171..54771680789127.3796208-CDS-C-tenellus_contig10359:5171..5477Choristocarpus tenellus KU2346CDSC-tenellus_contig10359 5172..5477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10359.2.8

>prot_C-tenellus_contig10359.2.8 ID=prot_C-tenellus_contig10359.2.8|Name=mRNA_C-tenellus_contig10359.2.8|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=275bp
MLECGVCMNLVCEPITLGCGHTFCRLCAVTAVQRSQKKCPSCRAVSLSCA
DSQEQNVMIANITQVCYPLQLEQRLLETQEERRQLKQSFPIFYYNLPMFP
GDKLTLHIFEPRYKIMVDRIMTTSRKFGYVPNYTNFQVANGDVLLKADVC
HCDFLGDGRVLLQARILSRQKILNSHVELDTHGLQFCQVEDLNDDPVNEE
SMSSVNRLHSVLRMLAPNLLGRLEVGCSGLSPLHGFCRKLPPKARFQRSS
VETGGKGKGGNWVTSDLKVPNPKN*
back to top

mRNA from alignment at C-tenellus_contig10359:1894..5594+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10359.2.8 ID=mRNA_C-tenellus_contig10359.2.8|Name=mRNA_C-tenellus_contig10359.2.8|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3701bp|location=Sequence derived from alignment at C-tenellus_contig10359:1894..5594+ (Choristocarpus tenellus KU2346)
AAGCTTAGGTACCAGGAAGCGTGAGTCGCCTTTTCTGCTGGAGGGATTGT AGAATGGAGGAGCCTGAAGTCAACGGTGGTCCAGGTGAGTCTCTTGTCTT GGCCCATCTAATAGGTGGAGAACTTTAAACAATTCCACTAGCCTCAAGCC TTTCTCCCTCTCCTTCTCTCTTCACAGCAAAAAGACCTCGTTCAAAAAAG GCGTGCCATTCCACTTCAGTGCCGATATCGATGCTGGAATGTGGCGTGTG TATGAATCTTGTGTGCGAGCCCATCACTTTAGGGTGTGGGCATACCTTTT GCCGATTGTGCGCGGTCACCGCAGTGCAGAGAAGTCAGAAGAAATGCCCA AGCTGCCGGGCTGTATCTCTCAGTTGGTGAGGATAGTTTACTATTTTTCT GTCATGGAATTCTTCTCTGGCGCTTTGCCACAAAGGTATGTTCAACCCCC GTCGATTGGCTACCATATCAACCCCCCATCGACTTCTCCTATGTTCAACA GCATTTATTCTCTTTTCCTCAACCAGCGCCGACAGTCAAGAACAGAACGT CATGATAGCAAATATTACTCAGGTCTGCTACCCTTTGCAATTGGAACAGC GATTGCTCGAGACTCAGGAGGAGAGACGACAGCTTAAACAGTCATTTCCG ATTTTTTACTGTGAGTTAGATTGACGCGACCCATTCGGATGTGTTGGGTG TTGCGAGTTGATAGTTGGTCTTACAAACTCCCTTGTGAAATGCAGGTAGG CTTATATCGTTTTGTCCGGCGAGGATCATTGGTCCTGAAAGCACATGAAG AATGTAACTAGGATGGACTTGAATAGAAAATACGTGCCTTGCTTGAACTT AACTGTAAACAGAATATCAGACTTTGTGGTACCTTCTTGAAGTCATGCCA CGTCTGTCCCGTCTGTCCGCCTTTTTTGGTAGAAACAACTAGTGCCAAGA GAGTAGAAGATACCACCGTTCCACAAGCGACAGTTTGGTTTGAAGATTTA AATCAAGTACTTTCTTGTTTGGTGTGGTCTTGTCACTCGTTGAACGGTCT ACAAGCAGATTCCCTTGCTGGATGCCGCAAGTAGCCCCAAAAATTATGAA AATTTGACGGAGTGAAAACTCTTAAGATGCTCTGATTGAGGTATGAACGA GATTTCATACATGCCTCGTAAAAATTTGTGGGCCCCTCTCTTTTTTTCTT TCTTATCAAAACACCTGTTATCGATTCTAAAGCAGACCGAAGGCACCTTG CTCTAAAAGGTATCTACAGCACAAAAGTGTGCCTTCATGTTTCTCCGTTC AGTAGTAAATACAATGTCAAAAACCTTTTCCCTTACAGGCAAAGGCTGAA TGCTGCAAAACAAGATCACATTGACACAATGGTTGGGTGCTGATGTCCCC CACCACCCTTGTCGCCCCCCAACCCCATTGTACCTCACTTCTGTCAGACA ACCTGCCCATGTTTCCCGGAGACAAGCTTACACTACATATTTTTGAGCCC AGATATAAGATCATGGTTGATCGAATAATGACCACCTCTCGGAAGTGAGC GTCTTGGGTGTACAGTTGGGCATCTTGTGTTGCCTTGTCTCTCCATGTTA TATTGCTTGTATGAGGGGTTGTCAGAATTTGGTCTTGGTTACGTGCAATG GGCTGTGCCGCTTTTGTCCCTTCTGAGGCGGTGGATGCCTCTCTGAAGTC TCTAACTTAAGACATAGGGGGTTGCAACATGGGCTGTGGCATGGAGTAAC GGCGGTTGTGGTTGCTACCTTTTTTCTTTTGTGTGGTAATGCCACTGGTA GATTCGAATTTGATGGAGAGAGACTTTGCAATTTTACCCTTGCTACACAT TTTTTCGTTGTGTAAGTCTCGTGGATTTGTGACAACACCATACCCCCTTT TGTTGACTTGGAGCTGGAGGAGGTGCTGAAAATGTAATCAGCATCAGATA AAAGTGATAAAAGCTACACCGTTTCATTTCTCCTTGATACTGTGAAGGAG GCTTTTTTTTCATCTTGGTGGGTCTGTTTGCTTGGTTCTTTCGTCGGCAT CAATATTTTGGTGTGGAAGAGCTCTGAAGTTTCTCAATAATGATCCTCTT GACTTTATGGAGATAGGCCCAGGTACTGAGGTTTCCCCTTCCCCTTCCCA TCTGTCCTGCAAACCTCTCTTCCTTTGGGATAAAACTAACAGGCTTGTTT GTCCCACTCTCTGCTCTGCTCTTGCCTGCAGGTTTGGGTATGTCCCCAAC TACACTAATTTCCAGGTGGCAAATGGCGATGTGCTCCTCAAGGCTGACGT GGTGAGATCCTGCTACTTTTTTTTTTATTTGCTTACCGTGTGTCTGACGT GTGTTTGGAGTGTGTATTCATTGGGTGGAGTGGAGGTGAACCCCATCATA AATCAGCATTGTTGGTGGTTTGAGGGGTCGCGCATATAGGTGCAATGATA CCTGTTGTTTGTTCTGGTGCATGTTTAAATGGGCTAATAGTCCTTTGTTG ATCGAGGTGCTGTGGCTATAGTTTTTTTGTAGAAAGAGTAACATACTTGT GGTGCTGAACTATTTAGGGGGTTGGATGCATGTCCTCTGCTTTTGTTGCT CGTCCCGGTCTAAAGCTGGAAGTTGTCACCATTTTGAGTTCTTTTGTGTT GGAATACCCTCCTTGCCCCTTACAGGTATCTTGTTTGCATTCCAAGAGTC TAACGCAGTTTGACCCTCTTCTCCCTGTATATTGGATGTCATGATGTGGT GAGAAGTGTCACTGTGACTTCTTGGGAGATGGGAGGGTTCTCCTCCAGGC AAGAATCTTGAGCAGACAAAAGATATTGGTGAGTCATTGAGTGTGCTCTC AACTTCCTAAGAGTTGGCAACTAGTGTGAAGGTGTGATGGGTGGGCAAGG GCCGTGTGTGCTGTGACATGTTAAACTTGATTGTGACAGGTGGATGAATG ATGTGTAGTGGTGATGGTGGGAAATGGAGGGAAAGGAAAGGTGCTGTTTC AGTGCAAGCAAATCAACTGCAAGATACTTCAAGGTGAAGTAGGACAAGAT ATGAGGTGTTCTTATGATGACCTCTGCAATGCTGTCAAGACCATTATCAT GTTCATCCATTTAATGTAATAGTGCTGAACTTCAAATTGGACATCTCCTT GCCTGTAGGACCATTCCCCCTTGTATAACCTACCATTCCATTGACTGGGG TGATAGTACACTGAGGGGTGTGGTACTCTTGACTTATTTTTGCCCTTCAC CTCCCCCCCTGGACACCAATCCTTGCAGAACTCTCATGTTGAGCTGGATA CTCATGGGCTTCAGTTCTGTCAGGTTGAAGATCTGAATGATGATCCAGTG AATGAGGAGAGCATGTCTTCTGTAAATAGACTGCATAGTGTGCTCAGGAT GCTTGCGCCCAACCTGCTCGGGCGCTTGGAGGTAGGGTGCAGTGGGTTAT CTCCGCTTCATGGTTTTTGCAGAAAACTGCCCCCTAAGGCTCGATTTCAG AGGAGTTCGGTGGAGACTGGTGGAAAGGGGAAGGGTGGTAACTGGGTTAC ATCTGATTTGAAAGTTCCTAACCCTAAGAATTGAAAATGTGTGCCAAGTA GACAAAGTGTGTCATCTCTTTCATGTATTGCCGTTGCTGTATGTATGGCA ATGCTTACAGCTCCCCTGGGTTGAACATGTTCCGGAACACAAGCAAGGAG G
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10359:1894..5594+

>mRNA_C-tenellus_contig10359.2.8 ID=mRNA_C-tenellus_contig10359.2.8|Name=mRNA_C-tenellus_contig10359.2.8|organism=Choristocarpus tenellus KU2346|type=CDS|length=825bp|location=Sequence derived from alignment at C-tenellus_contig10359:1894..5594+ (Choristocarpus tenellus KU2346)
ATGCTGGAATGTGGCGTGTGTATGAATCTTGTGTGCGAGCCCATCACTTT
AGGGTGTGGGCATACCTTTTGCCGATTGTGCGCGGTCACCGCAGTGCAGA
GAAGTCAGAAGAAATGCCCAAGCTGCCGGGCTGTATCTCTCAGTTGCGCC
GACAGTCAAGAACAGAACGTCATGATAGCAAATATTACTCAGGTCTGCTA
CCCTTTGCAATTGGAACAGCGATTGCTCGAGACTCAGGAGGAGAGACGAC
AGCTTAAACAGTCATTTCCGATTTTTTACTACAACCTGCCCATGTTTCCC
GGAGACAAGCTTACACTACATATTTTTGAGCCCAGATATAAGATCATGGT
TGATCGAATAATGACCACCTCTCGGAAGTTTGGGTATGTCCCCAACTACA
CTAATTTCCAGGTGGCAAATGGCGATGTGCTCCTCAAGGCTGACGTGTGT
CACTGTGACTTCTTGGGAGATGGGAGGGTTCTCCTCCAGGCAAGAATCTT
GAGCAGACAAAAGATATTGAACTCTCATGTTGAGCTGGATACTCATGGGC
TTCAGTTCTGTCAGGTTGAAGATCTGAATGATGATCCAGTGAATGAGGAG
AGCATGTCTTCTGTAAATAGACTGCATAGTGTGCTCAGGATGCTTGCGCC
CAACCTGCTCGGGCGCTTGGAGGTAGGGTGCAGTGGGTTATCTCCGCTTC
ATGGTTTTTGCAGAAAACTGCCCCCTAAGGCTCGATTTCAGAGGAGTTCG
GTGGAGACTGGTGGAAAGGGGAAGGGTGGTAACTGGGTTACATCTGATTT
GAAAGTTCCTAACCCTAAGAATTGA
back to top