mRNA_C-tenellus_contig10356.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10356.1.1
Unique NamemRNA_C-tenellus_contig10356.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10356.1.1 vs. uniprot
Match: D7FQ84_ECTSI (Glycerophosphocholine acyltransferase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ84_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 9.620e-19
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:  242 MLRTIFHELSVLATDADGVSEKLKANIIRQRERLRKVIEE--KGGKKLKSKFAEPLKRRKQEFRVKIRKVVTGDPTKRVRDHLREKRRQPPMIRFLDKAAFFVGV 550
            +LR I  ELS LA +ADGVSEK+K  I RQR+RL  +IEE  K  ++L+SK   PL + +++F  KIRK VTGDP K VR HL EKR +P ++R LDKAAF VGV
Sbjct:   50 LLRVINDELSSLAAEADGVSEKVKKIINRQRQRLDSLIEETSKAPRRLQSKITAPLDKHRRQFHGKIRKAVTGDPLKSVRLHLEEKRSKPFVMRMLDKAAFTVGV 154
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10356.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ84_ECTSI9.620e-1957.14Glycerophosphocholine acyltransferase 1 n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10356contigC-tenellus_contig10356:231..3523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQ84
PFAMsDUF2838
Model size949
Max annot lvl2759|Eukaryota
KEGG koko:K07466
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.31e-21
EggNOG OGsKOG2895@1|root,KOG2895@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF2838
Ec32 orthologEc-01_007080.1
Descriptionlysophospholipid acyltransferase activity
Cds size459
COG categoryI
BRITEko00000,ko00001,ko00002,ko03000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10356.1.1prot_C-tenellus_contig10356.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10356 382..3184 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.1072195-UTR-C-tenellus_contig10356:230..3811680789127.1072195-UTR-C-tenellus_contig10356:230..381Choristocarpus tenellus KU2346UTRC-tenellus_contig10356 231..381 +
1680789127.158428-UTR-C-tenellus_contig10356:3184..35231680789127.158428-UTR-C-tenellus_contig10356:3184..3523Choristocarpus tenellus KU2346UTRC-tenellus_contig10356 3185..3523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789127.1193106-CDS-C-tenellus_contig10356:381..5431680789127.1193106-CDS-C-tenellus_contig10356:381..543Choristocarpus tenellus KU2346CDSC-tenellus_contig10356 382..543 +
1680789127.1315558-CDS-C-tenellus_contig10356:864..9391680789127.1315558-CDS-C-tenellus_contig10356:864..939Choristocarpus tenellus KU2346CDSC-tenellus_contig10356 865..939 +
1680789127.1408327-CDS-C-tenellus_contig10356:1849..19031680789127.1408327-CDS-C-tenellus_contig10356:1849..1903Choristocarpus tenellus KU2346CDSC-tenellus_contig10356 1850..1903 +
1680789127.1501467-CDS-C-tenellus_contig10356:3016..31841680789127.1501467-CDS-C-tenellus_contig10356:3016..3184Choristocarpus tenellus KU2346CDSC-tenellus_contig10356 3017..3184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10356.1.1

>prot_C-tenellus_contig10356.1.1 ID=prot_C-tenellus_contig10356.1.1|Name=mRNA_C-tenellus_contig10356.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=153bp
MRMSGHRRSRSKSSPASDELLDSGWRSDSGMLRTIFHELSVLATDADGVS
EKLKANIIRQRERLRKVIEEKGGKKLKSKFAEPLKRRKQEFRVKIRKVVT
GDPTKRVRDHLREKRRQPPMIRFLDKAAFFVGVRELADHQREMNRCQKAM
TM*
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mRNA from alignment at C-tenellus_contig10356:231..3523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10356.1.1 ID=mRNA_C-tenellus_contig10356.1.1|Name=mRNA_C-tenellus_contig10356.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3293bp|location=Sequence derived from alignment at C-tenellus_contig10356:231..3523+ (Choristocarpus tenellus KU2346)
ATTGGTATTACATTGGTGGAATGTGGAATGTCACACCCACTCACTCTTTC
ATCATCATATTGGATAAGTAGCCTCAAGTACTACCCAAGAGTATTGTGTA
ATCCACCGCCTGCTTCAAATTGAGATAATACTCTTGGGGACTTGCTTGGA
AATGAGGATGTCAGGGCACAGGCGTTCCAGATCAAAATCCTCACCTGCAA
GTGACGAGTTACTGGATAGTGGATGGAGGTCGGACTCGGGGATGTTACGA
ACGATCTTCCATGAACTATCCGTACTTGCCACAGACGCTGATGGTGTTAG
CGAGAAGCTGAAGGTGAGAATCAGATTTGGGTTGAACTCTTGACGTCTGG
ACAAACAAGTCCATTCTATGCATCGTCGCTTTGCAAAGTTTTATTTTTGG
ATATAGCTGTGTTCCAAAACCGTCCGTTTGGTTTGATCCATAACTTGTTT
TTGTCTTACTTCAGACTGAGGAGCATGTTGCACTCTTCCTATCTTTGGTT
ATTGTGGTATATCTTAGGCTTGACATAAGCTCTTCTTGTCTGATTTGGTT
GATTCTGCTCGATTTCACCTTCAATAGCAATGCTTTCTGGTGATGCCCTG
ACGTCGTGGTCCCCGAACTGGATGTTGTTGCTAGGCAAACATCATTCGTC
AACGGGAAAGGTTACGCAAAGTAATCGAGGAGAAGGGAGGCAAGAAGCTC
AAATCCAAGGTAAATTTGCAAAACAATGCGCTGAACGACACCCTGGCATA
ACTAAGAATTTGTGGAAGTAAGGTAGGGCACATCAAGACCAACTAATTCT
CGGCGCATTATTTGGAGCACGTTCTGTGTGGGACTGATTCACGCCCACGA
GCTGGAAATGTTCATTTCATATTTTTGCATCCTGGCTGATTTGCTATCAT
TTCGAAACACGTGAACAGGATTGTGGAATGGTATGTCCGCGTGTCCTGGT
AAGCAATGTATCCTGATAACGGTAGATGGAGTTATTCGGAGTCAAAGGAA
CGTTTGACAATATCCTAGCTTATGCAACATTTAGAAGAGGGGAATGAATT
ACCAGTGAACGAAAAGTGTTCACTCCCCTGAGATGAATAGTTGGCTGGCT
GATGTATAGTGCTATGAATTCCTCCCCTTCACAAATCTGAGATTATTTTT
GTACAACGTGGATGCAATAAAACCTTTCCAACGTCGTAGTCTGAATTAGT
CTGAATTAGTCTGAAGTAGTCTGAATTAGTTGAAGCCAATATCTCCACAG
TTATACTATGCTCATGATTGTGCCTAGAACGTAGATATCACTTGGTCATT
GCTGTTCAGTTTCATCTCCTTTTTTATACTTCAGAGCACTATTCATTATT
ATTTTTTTTTTTTAAGTAAACGAAAAGTACAAGCGCCACGGCTCACGTCA
TAGAGCAGATGCTGCAGGCGCACATTTCTGTGTCCAGAGCCCGTTTGCTA
ACCTACAGCTTGTCCCTTTGGATGGTTTTTTGATGTGCTATATCCAAAGA
GATTAATGCCGAATTCTACTCAGTCCACTCATCCTCCTTACCTCCAATAC
GGTGATTGCTTCTTTGTCCCTAAGCGTCATGGCAAACCTTGTCCCTGCCC
TCCTGGACCTTTCTCTCAGTTTGCAGAACCTTTGAAGAGGCGGAAGCAAG
AGTTTAGAGTGAAGATCCGAAAGGTGCAAACTGATGGTGTGTCCCTGGCG
ATGTTTCTTATTTTATTTTATTTTGGACTACAGAAAAAAATACCACACAT
GTGAAACTACAATTTGGACTACAGAATAGAAACTACAATTTGGCTGTGTG
GTTGATGTGGGGATTCCATTTTTATTTTCACATGTGGGGTGAGGAAAGAT
TCAAAGCAAGAGTTTATGGCAGTCGAAATATTATGACATAAACAAAACTC
TCGATTATGCAGCTGTGGGTGTTTGGGCTCTATTGCTGGTGAATGTTGTA
TGATATGCATATTCCCAAGACATGAGTACTTGTGTAACAGTGGTGACTCA
GGGCAGCATTTTTGGATATGGGTGCATGTGTGTATGTACTGAAAGAAAAC
ATGGCAGTGACATATTTTTGTTGTTGGGAAGAGTGGGTCTAGTTTGTCAC
AGTTGTGTTCTAGCATGTGCATATGCATTGGAATAAAAGATGGCGGTGAC
ATATTTTTGTTGTTGGGAAGATTGGGTCTAATTTGCCACAGTTGTGTTCT
GCTCTTCCTTTTCTTTTTGCTACTGTGCGGGTTGGTTATACTGTCAATGT
ACAACTTGCAAAAAAGTCAACCTAGCCTTTCCACCTGTAGTTGCGCTGAA
GCCCTAGTGGATGAAAAATATTTCTTTTTGTTACCTCTACTATCCATTAA
TTATTTTTTTATGCAGCAAGAGTGATTAGTGTTCTTACTGTATCCATTGC
TTACTAGAAGCGTGTTCATTTGACTTTAAAAGTACAACTCTAATTGTTGT
TGTGATGATGACTTCTTTTTTTTTTTGACTTTGAAAGTACAACTCTAATT
GTTGTTGTGATGATGACTTCTTTTTTTTTTTACTTTGAAAGTACAACTCT
AATTGTTGTTGTGATGATGACTTCTTTTTTTTTGACTTTGAAAGTACAAC
TCTAATTGTTGTTGTGATGATGACTTTTTTTTTTTTCGAAGTGTGTATTG
TTTCATACTTCAGTTCGAAATGTTAATAATTTGATGTCTCATTTTAATTT
GAAATGTTAATTTGATTTCGTATTTTATTTTGAAATGTTATTTTGATTTC
TATGATACCAAACATTTAACTTTTTCTTCTTCGCAGGTGGTGACAGGAGA
CCCTACCAAGCGTGTGAGAGACCACCTCAGGGAGAAGCGAAGGCAGCCCC
CGATGATCAGGTTCCTGGACAAGGCTGCCTTCTTTGTTGGAGTGAGAGAG
CTTGCTGACCATCAGAGGGAAATGAATAGATGTCAGAAAGCAATGACCAT
GTAGCTGTACCATCATGATTATCGGGTATATCTATCGGGTATATCTATCC
CCCACAATGTTCTTCTTCTCCGACCATAGGCACCTACTGATGAATGTTGA
CCTCCTCCTTGTATCCTCTTACGTTGACCTCTTACGTCTTATGTCCCCGT
GTTGCATTCTATTCATATGATAAGTGTGGCTTTAGAGATGTAAGTGTGCA
TAGGCTTTGCGTTTATCATCTCTCAACAAATCAATTCAAAATGCACATCA
AGGCAATCCTTCTTTCTGTCCATCCATCCATCCATCCATCCATCCCCCCA
TCTGTCGGTGGTGAAAGTCATACGTTTGTGTTCTTATTTTGTA
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Coding sequence (CDS) from alignment at C-tenellus_contig10356:231..3523+

>mRNA_C-tenellus_contig10356.1.1 ID=mRNA_C-tenellus_contig10356.1.1|Name=mRNA_C-tenellus_contig10356.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=459bp|location=Sequence derived from alignment at C-tenellus_contig10356:231..3523+ (Choristocarpus tenellus KU2346)
ATGAGGATGTCAGGGCACAGGCGTTCCAGATCAAAATCCTCACCTGCAAG
TGACGAGTTACTGGATAGTGGATGGAGGTCGGACTCGGGGATGTTACGAA
CGATCTTCCATGAACTATCCGTACTTGCCACAGACGCTGATGGTGTTAGC
GAGAAGCTGAAGGCAAACATCATTCGTCAACGGGAAAGGTTACGCAAAGT
AATCGAGGAGAAGGGAGGCAAGAAGCTCAAATCCAAGTTTGCAGAACCTT
TGAAGAGGCGGAAGCAAGAGTTTAGAGTGAAGATCCGAAAGGTGGTGACA
GGAGACCCTACCAAGCGTGTGAGAGACCACCTCAGGGAGAAGCGAAGGCA
GCCCCCGATGATCAGGTTCCTGGACAAGGCTGCCTTCTTTGTTGGAGTGA
GAGAGCTTGCTGACCATCAGAGGGAAATGAATAGATGTCAGAAAGCAATG
ACCATGTAG
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