mRNA_C-tenellus_contig10343.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10343.2.1
Unique NamemRNA_C-tenellus_contig10343.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10343.2.1 vs. uniprot
Match: A0A7S3UTQ6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTQ6_HETAK)

HSP 1 Score: 80.5 bits (197), Expect = 3.000e-14
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:  724 LQEMIEEADRDQDGVVSAEEFYRVMRKREDPLDDLDSDDDF 846
            LQEMIEEADRD DGVV+A+EFYRVMRKREDPLDDLDSDDDF
Sbjct:   99 LQEMIEEADRDNDGVVNADEFYRVMRKREDPLDDLDSDDDF 139
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BLAST of mRNA_C-tenellus_contig10343.2.1 vs. uniprot
Match: A0A6V1NRV6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRV6_HETAK)

HSP 1 Score: 80.5 bits (197), Expect = 9.120e-14
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:  724 LQEMIEEADRDQDGVVSAEEFYRVMRKREDPLDDLDSDDDF 846
            LQEMIEEADRD DGVV+A+EFYRVMRKREDPLDDLDSDDDF
Sbjct:  144 LQEMIEEADRDNDGVVNADEFYRVMRKREDPLDDLDSDDDF 184
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BLAST of mRNA_C-tenellus_contig10343.2.1 vs. uniprot
Match: D8LK03_ECTSI (Putative: similar to centrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK03_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 4.050e-13
Identity = 36/41 (87.80%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:  724 LQEMIEEADRDQDGVVSAEEFYRVMRKREDPLDDLDSDDDF 846
            LQEMI+EADRDQDGVV+A+EFYRVMRKREDPLDDLDSDD++
Sbjct:  142 LQEMIDEADRDQDGVVNADEFYRVMRKREDPLDDLDSDDEY 182
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BLAST of mRNA_C-tenellus_contig10343.2.1 vs. uniprot
Match: A0A7S2V0E0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0E0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.130e-11
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:  724 LQEMIEEADRDQDGVVSAEEFYRVMRKREDPLDDLDSDDDF 846
            LQEM++EADRD DGV++ EEFYRVMRKREDPLD++DSDDDF
Sbjct:  154 LQEMVDEADRDGDGVINQEEFYRVMRKREDPLDEIDSDDDF 194
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BLAST of mRNA_C-tenellus_contig10343.2.1 vs. uniprot
Match: A0A812WEV1_SYMMI (Calmodulin n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WEV1_SYMMI)

HSP 1 Score: 72.8 bits (177), Expect = 4.310e-11
Identity = 32/41 (78.05%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:  724 LQEMIEEADRDQDGVVSAEEFYRVMRKREDPLDDLDSDDDF 846
            LQEM++EADRD DGV++ EEFYRVMRKRE+PLD++DSDDDF
Sbjct:  145 LQEMVDEADRDGDGVINEEEFYRVMRKRENPLDEIDSDDDF 185
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BLAST of mRNA_C-tenellus_contig10343.2.1 vs. uniprot
Match: A0A482SDP1_9ARCH (EF-hand domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDP1_9ARCH)

HSP 1 Score: 67.8 bits (164), Expect = 6.050e-11
Identity = 30/38 (78.95%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:  733 MIEEADRDQDGVVSAEEFYRVMRKREDPLDDLDSDDDF 846
            MI+EADRD DGV++ EEFYRVMRKRE+PLD++DSDDDF
Sbjct:    1 MIDEADRDGDGVINEEEFYRVMRKRENPLDEIDSDDDF 38
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BLAST of mRNA_C-tenellus_contig10343.2.1 vs. uniprot
Match: A0A5K1HN76_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1HN76_9MAGN)

HSP 1 Score: 63.9 bits (154), Expect = 4.390e-9
Identity = 28/40 (70.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:  724 LQEMIEEADRDQDGVVSAEEFYRVMRKREDPLDDLDSDDD 843
            L+EM+EEADRD DG+++ EEFYR+MR+R DPLDD DSDD+
Sbjct:   45 LKEMLEEADRDGDGMLNFEEFYRIMRRRGDPLDDFDSDDE 84
[Close]
BLAST of mRNA_C-tenellus_contig10343.2.1 vs. uniprot
Match: A0A0G4G1J2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G1J2_9ALVE)

HSP 1 Score: 64.7 bits (156), Expect = 2.310e-8
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:  724 LQEMIEEADRDQDGVVSAEEFYRVMRKR-EDPLDDLDSDDD 843
            LQEMIEEADRD DG++S +EFYRVMR+R +DPLDD DSD+D
Sbjct:  138 LQEMIEEADRDGDGLISQDEFYRVMRRRGDDPLDDFDSDED 178
[Close]
BLAST of mRNA_C-tenellus_contig10343.2.1 vs. uniprot
Match: A0A812STT5_9DINO (Calmodulin n=2 Tax=Suessiales TaxID=89954 RepID=A0A812STT5_9DINO)

HSP 1 Score: 62.8 bits (151), Expect = 3.690e-8
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:  724 LQEMIEEADRDQDGVVSAEEFYRVMRKRE-DPLDDLDSDDD 843
            LQEMIEEADRD DG++S EEFYRVMRKR  +PLDD DSD+D
Sbjct:   90 LQEMIEEADRDGDGLISPEEFYRVMRKRGGNPLDDWDSDED 130
[Close]
BLAST of mRNA_C-tenellus_contig10343.2.1 vs. uniprot
Match: A0A7S1FH34_NOCSC (Calmodulin n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FH34_NOCSC)

HSP 1 Score: 63.9 bits (154), Expect = 9.190e-8
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:  724 LQEMIEEADRDQDGVVSAEEFYRVMRKRE-DPLDDLDSDDD 843
            LQEMIEEADRD DG++S +EFYRVMRKR  +PLDD DSDDD
Sbjct:  181 LQEMIEEADRDGDGLISPDEFYRVMRKRGGNPLDDFDSDDD 221
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10343.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UTQ6_HETAK3.000e-1492.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1NRV6_HETAK9.120e-1492.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LK03_ECTSI4.050e-1387.80Putative: similar to centrin n=1 Tax=Ectocarpus si... [more]
A0A7S2V0E0_9STRA1.130e-1180.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A812WEV1_SYMMI4.310e-1178.05Calmodulin n=1 Tax=Symbiodinium microadriaticum Ta... [more]
A0A482SDP1_9ARCH6.050e-1178.95EF-hand domain-containing protein n=1 Tax=archaeon... [more]
A0A5K1HN76_9MAGN4.390e-970.00Uncharacterized protein (Fragment) n=1 Tax=Nymphae... [more]
A0A0G4G1J2_9ALVE2.310e-875.61Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A812STT5_9DINO3.690e-878.05Calmodulin n=2 Tax=Suessiales TaxID=89954 RepID=A0... [more]
A0A7S1FH34_NOCSC9.190e-878.05Calmodulin n=1 Tax=Noctiluca scintillans TaxID=296... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10343contigC-tenellus_contig10343:3219..5420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LK03
PFAMsEF-hand_1,EF-hand_5,EF-hand_7,EF-hand_8
Model size2063
Max annot lvl2759|Eukaryota
KEGG koko:K16465
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.23e-14
EggNOG OGsCOG5126@1|root,KOG0028@2759|Eukaryota
Descriptioncalcium ion binding
Cds size117
COG categoryDTZ
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789126.8229268-UTR-C-tenellus_contig10343:3218..34881680789126.8229268-UTR-C-tenellus_contig10343:3218..3488Choristocarpus tenellus KU2346UTRC-tenellus_contig10343 3219..3488 -
1680789126.8369567-UTR-C-tenellus_contig10343:3627..45711680789126.8369567-UTR-C-tenellus_contig10343:3627..4571Choristocarpus tenellus KU2346UTRC-tenellus_contig10343 3628..4571 -
1680789126.8574579-UTR-C-tenellus_contig10343:4688..54201680789126.8574579-UTR-C-tenellus_contig10343:4688..5420Choristocarpus tenellus KU2346UTRC-tenellus_contig10343 4689..5420 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789126.8486001-CDS-C-tenellus_contig10343:4571..46881680789126.8486001-CDS-C-tenellus_contig10343:4571..4688Choristocarpus tenellus KU2346CDSC-tenellus_contig10343 4572..4688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10343.2.1prot_C-tenellus_contig10343.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10343 4572..4688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10343.2.1

>prot_C-tenellus_contig10343.2.1 ID=prot_C-tenellus_contig10343.2.1|Name=mRNA_C-tenellus_contig10343.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=39bp
MIEEADRDQDGVVSAEEFYRVMRKREDPLDDLDSDDDF*
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mRNA from alignment at C-tenellus_contig10343:3219..5420-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10343.2.1 ID=mRNA_C-tenellus_contig10343.2.1|Name=mRNA_C-tenellus_contig10343.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2202bp|location=Sequence derived from alignment at C-tenellus_contig10343:3219..5420- (Choristocarpus tenellus KU2346)
CCTCTAGCACACTATGGGTCAAAACTCCTGTTAGAGTGACAGTTGTTATT
GTTGCTATTAGCCTTGCACTTGTAGGATGTTCTTCGACCCGGGATCAGAG
GTACTAGAGCTCTACCTCTGTACAACGCACAAAATTACCAACACTGTTTT
ACATACACTCCGTGTGTGTCTTTTGCTTCTTGTAGAATGGGTCAAGTCAT
CACACCACAGCTCATTGACCACCCCCTCCCCCGTCAAGTCTTTTACTCCC
TCGCTCAGCCGCGTGACTAAGTCTTAAAAGCCTCTCAGACATCACACCAG
GGCAGTGTGTCTGGTAGTGAGAAATAGGCACACAAGTAGGAGCACCTCAA
AAACATTTCACCTCCAGCGGTGCCCTTCAGTGCCCGGGGGGTCCCATTAC
CCTGCCTTGTGTGCTTTGTGTGCTTTCGAACTATCGTGAAATACACCAAA
AAAATCTCTCAGTCGATTTAATTTGTGGTCACATGTATTTTCGATTCAAA
GCACTGCTTTGAATAGGAACAAAAAGCAGGTGGAGAAAACAGTATAAGTT
ATTCTCTGTGTTGCCTCCCCACCACCCCCCCCCCTCGCATAATATCGCCT
CACATGGCGATCTTCTCATCATAACCATCCCACAACAGCAGTTGTTTTTA
CATCTGCCATTCTTCCCCGTGCCAACCACCGGACCACTAAGTCTCTCTCG
CCCCCCTTCCTCTGTCTCTGGTGTTGCAGGAGATGATTGAAGAGGCAGAC
CGTGACCAGGATGGCGTAGTTAGCGCGGAGGAGTTCTACCGTGTCATGCG
CAAGCGAGAAGATCCTCTTGACGACCTAGACAGTGACGACGACTTCTGAT
CCAGATGTACCCCTGATTTGGAGGTTCAGTTTGAACCTAGTACTGGCCCT
GAACACAAAACATTGTGAGCAACCACTGGGTTGTATTAGCGGTCCTTGTG
GCAGAGCAGTGGAGGATTTCGATATTCTCGGACTGTGGTGTCTGCAAGGT
GTCAGTTATGACTATACCCTAACTTGACACGTGATGCACATTATGAGAGC
TCAGGACCCAGAGGAAGGTCAATATTCGAGAGTCTCAGATATAGATTGGA
AACAGGACTCAAGAGTAGAACATCTCATGTAGAATATGCAACTTGTTTCA
CTATCCTGTTGCAGTTCAACACATCGTGCTTGTCGTTTCCACCTCACCAC
TACTTGGTCCTCATACTGAACTTTAGTGGTGGTTTGAATTGGAGTTGAAG
GTCGCAAAGTACTGTGATATTGGGGATGTTTGACATCAGTTTGTGTGTAA
GATGTATATTACGCAGTAGGTGCATGGAAAGTGCGTGTCTGCTGCTGTTC
TACCAGAAGAGCTCCTGCTTTATATCCTCAGATTCCAGAAGTCTGTCCAT
CCTGTGGGGGACCCACCATGTATTCAAGAGTTGTGTCGGTCCATCAAGCT
TCAATACGTGGTGTGCTTGGTTGACGTTAATGTCACAGAGAGTCGAATGC
CGGATCCACATACCCCTGTGAGCGTTTTGTTTATGGATCCTTCGAAGTAC
CTCATTATGGTCTACTTCAGGGTATTTAGTACCCATGGAATTCAACCTGT
ATTGATGGCAAATTTGTTGCACAATTGTTGGAGAACTTTGGCATCATTCT
GGGTTTGCTGAGGTGACAGGATGAGCACACGATACCACTGTGACAATTGT
GTTAATTTTTTCGTTTCAATAAAATGAAATGCATAGCATCACTTGCACAG
AGAGTCTTGTAGGGTCTTCTTCCTACTGGGCATCAAGGACGCCCTTCCTC
AGATGTCTGCACAGCTGATTGCTTGTCCTGAAAAGGATGATGCAGCCCTT
GAGCGACCTATGGCGGCATCTTGAAATTTGTATCTCTTTCCTGTCAAGGA
ACTGTAGATAGATTGGAGCTATGGCCCTACACGGTACTACAGACAAGAAC
GGCATGGGAATTGAGGGAACCAGGTTTGAGAGTGGATTGAACAAGAACCA
ATGTACATACTGCTTGAAAGTGGAACCGCAGGTGTAGAGACTGCCACTCA
TATTTAGCTGGGGAATCCCCAGCAATGCGCCCATAGGAAATGTCACCTGC
GCATAACTTACTGATTGTCGTGCCTCCTATGTTTTGAGTTGATACCCATT
GCGCATTCCTCCTGCTAGTGATTACGTTCATGAAAGGATATTCCACTGGT
CC
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Coding sequence (CDS) from alignment at C-tenellus_contig10343:3219..5420-

>mRNA_C-tenellus_contig10343.2.1 ID=mRNA_C-tenellus_contig10343.2.1|Name=mRNA_C-tenellus_contig10343.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=117bp|location=Sequence derived from alignment at C-tenellus_contig10343:3219..5420- (Choristocarpus tenellus KU2346)
ATGATTGAAGAGGCAGACCGTGACCAGGATGGCGTAGTTAGCGCGGAGGA
GTTCTACCGTGTCATGCGCAAGCGAGAAGATCCTCTTGACGACCTAGACA
GTGACGACGACTTCTGA
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