mRNA_C-tenellus_contig10340.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10340.2.1
Unique NamemRNA_C-tenellus_contig10340.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10340.2.1 vs. uniprot
Match: A0A6H5KMS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS2_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 6.170e-56
Identity = 92/148 (62.16%), Postives = 115/148 (77.70%), Query Frame = 3 
Query:  453 IGTLYSSRGEVIRELNSNEYLEVMRDWAPVASFAASQADDEKIKASATSILESLRGMAQWQPKKKGDYRKPGSKFAFGVPFVAVKNDIIDALACLQVSEEEGVVIEWICQNPFTLGVEGNAVEWLTKGIVTLCSKRLEMPVTVAPAAR 896
            IGTL+ S  E+IREL+S EY  ++RDWAP+ASFA+ +A D K+K  A  IL  LRGMA+WQPK+  DY K GSK++FG P  A+K   +DALACLQVSE++GVV+EWIC NP TLG+ GNAVEWL KGI  LC KRL++PVT++P AR
Sbjct:  150 IGTLFESEDELIRELSSEEYTNLLRDWAPIASFASVEAIDTKVKEEAACILTVLRGMAEWQPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKAR 297
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BLAST of mRNA_C-tenellus_contig10340.2.1 vs. uniprot
Match: D7FI60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI60_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.030e-34
Identity = 59/92 (64.13%), Postives = 74/92 (80.43%), Query Frame = 3 
Query:  621 MAQWQPKKKGDYRKPGSKFAFGVPFVAVKNDIIDALACLQVSEEEGVVIEWICQNPFTLGVEGNAVEWLTKGIVTLCSKRLEMPVTVAPAAR 896
            MA+WQPK+  DY K GSK++FG P  A+K   +DALACL+VSE++GVV+EWIC NP TLG+ GNAVEWL KGI  LC KRL++PVT++P AR
Sbjct:    1 MAEWQPKRNSDYTKVGSKWSFGAPIGAIKGGQVDALACLEVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKAR 92
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BLAST of mRNA_C-tenellus_contig10340.2.1 vs. uniprot
Match: A0A0G4F895_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F895_VITBC)

HSP 1 Score: 126 bits (317), Expect = 4.510e-30
Identity = 61/150 (40.67%), Postives = 97/150 (64.67%), Query Frame = 3 
Query:  453 IGTLYSSRGEVIRELNSNEYLEVMRDWAPVASFAASQAD-DEKIKASATSILESLRGMAQWQPKKKGDYRKPGSKFAFGVPFVAVKNDIIDALACLQVSEEEGVVIEWICQNPFTLGVEGNAVEWLTKGIVTLCSKRLEMPVTVAPAARL 899
            +GTL+ S  E IREL S+E+L+ MR WAP+++F  ++ +   + + +AT ++  L+ MA+W+P + G Y      + FG P  A K   +DA+ACL++SE +GVV+ +I  NP  +GVEGNA +WL KG+  +C +RL M + + P  R+
Sbjct:   69 LGTLFKSEDEEIRELGSDEFLDTMRLWAPMSNFVVNEGNASSREEGNATRLV--LQQMAEWKPPRSGSYLGKTPDWRFGAPVGAFKGGQLDAVACLEISESDGVVVRYIVLNPLNIGVEGNAADWLIKGMAFICRERLGMRLDIYPLMRV 216
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BLAST of mRNA_C-tenellus_contig10340.2.1 vs. uniprot
Match: A0A835Z8Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.580e-25
Identity = 48/92 (52.17%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:  621 MAQWQPKKKGDYRKPGSKFAFGVPFVAVKNDIIDALACLQVSEEEGVVIEWICQNPFTLGVEGNAVEWLTKGIVTLCSKRLEMPVTVAPAAR 896
            M +W P +KGD+R+ GS +AF  P  A K   +DA+ACL+V+EE+G+ I W+C+NP  LGV GN++ WL KGI TL  KRL+M V   P AR
Sbjct:    1 MQKWAPARKGDFRQEGSGWAFAAPVAAFKAGNLDAVACLEVTEEDGITIAWLCENPSYLGVPGNSIAWLVKGIETLVGKRLDMAVQELPTAR 92
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10340.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KMS2_9PHAE6.170e-5662.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI60_ECTSI1.030e-3464.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4F895_VITBC4.510e-3040.67Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A835Z8Z3_9STRA7.580e-2552.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10340contigC-tenellus_contig10340:1949..3633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1376
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_003670.1
Cds size708
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789126.6784017-UTR-C-tenellus_contig10340:1948..21661680789126.6784017-UTR-C-tenellus_contig10340:1948..2166Choristocarpus tenellus KU2346UTRC-tenellus_contig10340 1949..2166 +
1680789126.7249405-UTR-C-tenellus_contig10340:3183..36331680789126.7249405-UTR-C-tenellus_contig10340:3183..3633Choristocarpus tenellus KU2346UTRC-tenellus_contig10340 3184..3633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789126.689527-CDS-C-tenellus_contig10340:2166..24801680789126.689527-CDS-C-tenellus_contig10340:2166..2480Choristocarpus tenellus KU2346CDSC-tenellus_contig10340 2167..2480 +
1680789126.710105-CDS-C-tenellus_contig10340:2789..31831680789126.710105-CDS-C-tenellus_contig10340:2789..3183Choristocarpus tenellus KU2346CDSC-tenellus_contig10340 2790..3183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10340.2.1prot_C-tenellus_contig10340.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10340 2167..3183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10340.2.1

>prot_C-tenellus_contig10340.2.1 ID=prot_C-tenellus_contig10340.2.1|Name=mRNA_C-tenellus_contig10340.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=236bp
MRPAIWIWVAWLSLYKTCTAFNTLLPRPRTPLRCRMTATSPKSTSGSGFG
QKKDDSSDVPKDETPSTQSEEREIMTGIIGTLYSSRGEVIRELNSNEYLE
VMRDWAPVASFAASQADDEKIKASATSILESLRGMAQWQPKKKGDYRKPG
SKFAFGVPFVAVKNDIIDALACLQVSEEEGVVIEWICQNPFTLGVEGNAV
EWLTKGIVTLCSKRLEMPVTVAPAARLDSIPKSSD*
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mRNA from alignment at C-tenellus_contig10340:1949..3633+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10340.2.1 ID=mRNA_C-tenellus_contig10340.2.1|Name=mRNA_C-tenellus_contig10340.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1685bp|location=Sequence derived from alignment at C-tenellus_contig10340:1949..3633+ (Choristocarpus tenellus KU2346)
AACCAAGACCCGTCACCTCTAAAGTATGCTGACTTGTGACGAAGCAGGCT
TGATGTTTGAACAACTGTCTTGTTCATGCTAATGAAGGACACTTACAGCC
CCACGCGGAAAACTTTCCAGAATATCGAGGCGTGAATGAGCTTTTCTTCA
TGAACATCAACATTATTGTTGTTGCTTATGTTTGGGGCGAACACGACATT
TAAACAGGAGACAGCGTGATGAGGCCTGCCATCTGGATATGGGTAGCCTG
GCTTTCGTTATACAAGACATGTACCGCCTTCAATACGTTATTGCCGCGCC
CCCGTACTCCGCTTCGGTGTAGGATGACGGCCACAAGCCCGAAGAGTACC
TCTGGGAGTGGGTTCGGACAAAAGAAAGATGACTCAAGTGATGTACCGAA
GGATGAAACTCCCTCGACCCAGTCGGAGGAGAGGGAGATTATGACGGGTA
TTATAGGTACCCTCTATTCATCGCGAGGCGAGGTCATCCGCGAGCTGAAT
AGCAACGAGTACCTTGAAGTCATGCGTGATTGGTGAGTAATTTTGGAGTG
CCAGACGATCTTGCGAGGAAGTCGCTGTGGGTGAATGATGCAATATGATG
TCTCGCTAAGGATTCCCTTTTTTTTGCTAGCACTGGTCTCTTCAAGGTAA
GCGTTTTGTCGCTGTACTTGTCAGCTGGCGGGCAACATGTCCTAACTCGG
CCAATAGTGCTTTGTCCGTTCTTTAGGTATAGAATCCCACAGAGTTAGTC
GTGCTTATTGTTATATGTATTGCTTGGAACTTAGTGGCTAGTGCTTACGG
TGCATCAAACGTCGCCAACTGTGCTCTTTGCTTATTTGCAGGGCGCCTGT
TGCCTCTTTCGCTGCATCCCAAGCTGATGACGAGAAAATTAAAGCCAGTG
CCACGTCTATCCTCGAGTCCCTTCGAGGTATGGCGCAGTGGCAGCCAAAG
AAGAAGGGCGACTACAGAAAACCGGGATCGAAGTTTGCCTTTGGGGTACC
CTTCGTGGCCGTCAAGAATGATATCATCGACGCACTCGCATGCCTGCAGG
TATCGGAGGAGGAGGGTGTGGTCATAGAGTGGATATGCCAAAACCCCTTC
ACCCTGGGCGTGGAGGGCAACGCTGTCGAGTGGCTGACGAAGGGTATCGT
GACTTTGTGTAGCAAAAGGCTGGAAATGCCGGTGACTGTTGCTCCAGCGG
CACGATTGGACAGTATACCCAAAAGTAGTGATTAGGCCTGTCGTCAGTGG
TGTGTTGTGTCATAGATCCAAAAGCCGCTGTAATATAGTAGGGGTGCTAA
CCTAAGGGATATCAATTGTGCCTTGTGAATTGCCCCATGTCTATACACAG
GGCACACATGATCATACATGTTCTTGTCAAATGTCGCCTCATGCAACAAG
CAAAACGCAGGGGTTTTGCGCAAAAGTTTCTTTATCGAATCTGTTTATTT
TATTTCAAGAACAGAGGGTTTTACTGTTGCTGACTATACACAGTGATATC
AACTGTACATCTCGAGGGGGGAGTGGGTATGAGAGCTTATTTCTGCCTGG
GCACTGGCTCCAAAGGCCTCACAATAGCCAAGGATACAGCGCATTTCTCT
CCTAGACTAAAAAAAGCATCCCGAACATTTCACCATCTTCAATGCATCTT
TATTCTGTCACCATAAATAAAGGTTCCAAATAAAT
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Coding sequence (CDS) from alignment at C-tenellus_contig10340:1949..3633+

>mRNA_C-tenellus_contig10340.2.1 ID=mRNA_C-tenellus_contig10340.2.1|Name=mRNA_C-tenellus_contig10340.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=708bp|location=Sequence derived from alignment at C-tenellus_contig10340:1949..3633+ (Choristocarpus tenellus KU2346)
ATGAGGCCTGCCATCTGGATATGGGTAGCCTGGCTTTCGTTATACAAGAC
ATGTACCGCCTTCAATACGTTATTGCCGCGCCCCCGTACTCCGCTTCGGT
GTAGGATGACGGCCACAAGCCCGAAGAGTACCTCTGGGAGTGGGTTCGGA
CAAAAGAAAGATGACTCAAGTGATGTACCGAAGGATGAAACTCCCTCGAC
CCAGTCGGAGGAGAGGGAGATTATGACGGGTATTATAGGTACCCTCTATT
CATCGCGAGGCGAGGTCATCCGCGAGCTGAATAGCAACGAGTACCTTGAA
GTCATGCGTGATTGGGCGCCTGTTGCCTCTTTCGCTGCATCCCAAGCTGA
TGACGAGAAAATTAAAGCCAGTGCCACGTCTATCCTCGAGTCCCTTCGAG
GTATGGCGCAGTGGCAGCCAAAGAAGAAGGGCGACTACAGAAAACCGGGA
TCGAAGTTTGCCTTTGGGGTACCCTTCGTGGCCGTCAAGAATGATATCAT
CGACGCACTCGCATGCCTGCAGGTATCGGAGGAGGAGGGTGTGGTCATAG
AGTGGATATGCCAAAACCCCTTCACCCTGGGCGTGGAGGGCAACGCTGTC
GAGTGGCTGACGAAGGGTATCGTGACTTTGTGTAGCAAAAGGCTGGAAAT
GCCGGTGACTGTTGCTCCAGCGGCACGATTGGACAGTATACCCAAAAGTA
GTGATTAG
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