mRNA_C-tenellus_contig1034.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1034.1.1
Unique NamemRNA_C-tenellus_contig1034.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1034.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1034contigC-tenellus_contig1034:4823..7478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2656
Hectar predicted targeting categoryother localisation
Exons1
Cds size1611
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789126.6210513-UTR-C-tenellus_contig1034:4822..50091680789126.6210513-UTR-C-tenellus_contig1034:4822..5009Choristocarpus tenellus KU2346UTRC-tenellus_contig1034 4823..5009 +
1680789126.6443417-UTR-C-tenellus_contig1034:6620..74781680789126.6443417-UTR-C-tenellus_contig1034:6620..7478Choristocarpus tenellus KU2346UTRC-tenellus_contig1034 6621..7478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789126.6355143-CDS-C-tenellus_contig1034:5009..66201680789126.6355143-CDS-C-tenellus_contig1034:5009..6620Choristocarpus tenellus KU2346CDSC-tenellus_contig1034 5010..6620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1034.1.1prot_C-tenellus_contig1034.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1034 5010..6620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1034.1.1

>prot_C-tenellus_contig1034.1.1 ID=prot_C-tenellus_contig1034.1.1|Name=mRNA_C-tenellus_contig1034.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=537bp
MPIMMESKLVRVIGLVGRSGWFLPIEVKQLQLSSLILCLECRLKMTGLCV
RVSKSTPRRLISECGIEKVNRSSVSRVPPLRVEEVTWDLNQLGEMARWPK
KLGRLIFRKAPSKTEGVVLSWPSRLHYLRFGEEFNQSLDGVVLPESLERL
SFGKSFNQDVEGVAWPTGLQQLIFGANFNQPIDYIMLPSGLQELVFGDFF
NRNVDNVVWPLRLERLTFGIGFNQSVDEVDWPSGLQQLTFGDSFNQEIQR
IVWPIGLQELIFGWDFNQAVDEVAWPTGLEKLTFGINFNQPVDGVRWPTG
LQQLTFGDNFDKPVHGLIWPTGLVQLTFGLLFNQSLDGVLWPIGLQVLTF
GVCFNQALDRVEWPTGLCQLTFGRGFNQALEGVIWPGGLRKISLDYNFNQ
PVERVPWPADLEELTFGDCFDQSIEKVVWPLGIKRLAFGKCFNHSVEEVT
WPVGLKKVNFGYGFNQNLDGVVWPTGLLQLTFGGKAGHSGVFGRELDEVI
RVDRENMSSDILTYYNEWVEEGKVRPKRGNLRLNVC*
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mRNA from alignment at C-tenellus_contig1034:4823..7478+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1034.1.1 ID=mRNA_C-tenellus_contig1034.1.1|Name=mRNA_C-tenellus_contig1034.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2656bp|location=Sequence derived from alignment at C-tenellus_contig1034:4823..7478+ (Choristocarpus tenellus KU2346)
GTTCAGACGTTAAGTTGTTGATGCCTAAGATCTTTTATTGGTCAAAGTGT
ATCAGCCATCAACGAGATCTGTCCAACGTGAAGAGAACTTACCACTACGA
CTGGGTGTTAAGTCGCACAGGAGGAATACCACACATAGGTGCGCATTGGA
CAATACGAAATCCCCACCACTAAAAGGAGCCGAGCCAATGCCCATAATGA
TGGAAAGCAAACTTGTCCGAGTGATTGGGCTAGTCGGGAGGTCGGGATGG
TTTTTGCCGATCGAGGTCAAGCAACTTCAGCTGTCGTCGCTGATCCTGTG
TCTGGAATGCCGGTTGAAGATGACCGGCCTCTGTGTGCGAGTCTCCAAAA
GTACACCTCGTAGGCTGATCTCGGAATGTGGAATTGAAAAGGTTAACCGA
AGCTCTGTATCACGCGTGCCGCCTCTTCGTGTTGAAGAGGTGACCTGGGA
CCTCAACCAACTAGGAGAGATGGCGCGATGGCCCAAGAAACTGGGGCGAC
TGATTTTCAGAAAAGCACCCTCTAAGACTGAGGGCGTGGTGTTGTCATGG
CCATCAAGGCTTCATTATCTGAGGTTTGGAGAAGAATTTAACCAATCCTT
GGATGGAGTTGTACTGCCTGAGAGCCTTGAGCGATTGTCCTTTGGGAAAT
CCTTCAATCAGGATGTGGAAGGGGTGGCTTGGCCAACAGGGCTTCAGCAA
CTGATATTTGGAGCCAACTTCAACCAGCCGATTGACTATATTATGTTACC
ATCAGGGCTCCAGGAGCTGGTCTTCGGTGATTTTTTCAACAGGAACGTGG
ATAATGTGGTGTGGCCATTGAGGCTCGAGCGATTGACGTTTGGGATCGGC
TTCAACCAGTCTGTGGATGAAGTGGATTGGCCGTCGGGTCTCCAGCAGCT
GACCTTTGGGGACAGTTTTAACCAGGAGATCCAAAGGATAGTGTGGCCGA
TTGGTCTCCAGGAGCTGATATTTGGGTGGGACTTCAACCAGGCCGTGGAT
GAGGTGGCATGGCCCACAGGACTCGAGAAGCTGACTTTTGGAATAAACTT
CAATCAGCCGGTGGATGGAGTGCGGTGGCCAACGGGACTTCAACAGCTCA
CTTTTGGAGACAATTTTGACAAACCTGTGCATGGTTTAATTTGGCCAACA
GGGCTCGTGCAGCTGACCTTCGGACTCTTGTTCAATCAGTCATTAGACGG
CGTGCTTTGGCCAATTGGTCTTCAGGTACTGACTTTTGGAGTTTGCTTTA
ACCAGGCACTCGACAGAGTGGAGTGGCCGACAGGACTCTGTCAACTGACC
TTTGGGAGGGGCTTCAACCAGGCGTTGGAAGGGGTGATTTGGCCGGGTGG
ACTACGCAAAATATCTCTTGACTACAACTTCAACCAACCAGTGGAAAGGG
TGCCTTGGCCAGCTGATCTGGAGGAGCTTACCTTCGGGGACTGCTTTGAC
CAGAGTATTGAGAAGGTGGTCTGGCCGTTAGGTATAAAACGACTGGCGTT
TGGAAAATGTTTCAATCACTCAGTGGAGGAAGTTACTTGGCCAGTAGGAC
TAAAGAAGGTGAATTTCGGATATGGCTTCAACCAGAATTTGGATGGAGTG
GTGTGGCCGACAGGTCTCTTGCAGCTGACGTTTGGTGGAAAAGCGGGGCA
CTCAGGTGTGTTTGGGCGAGAACTGGATGAGGTCATTCGTGTCGACCGAG
AGAACATGTCATCCGACATACTGACCTACTACAATGAGTGGGTTGAAGAA
GGTAAGGTTCGACCGAAGAGAGGAAATCTCCGCCTGAACGTTTGTTGAAT
GTGGTAGGGTGTGTATATATTCCTAAAGTTTCTTTGCACACATGCTCACA
TTTTCCATGAGTTCTGGGCGAATAAGTAGGAGTCCTACATGGTTACTGTT
GATACTATACTTCCCTGAAGGGGTGATCTTCATCGAGGTTGTGGGTAGGT
TGTGCCACATTCATGGAGAGAATGCTGTTTGGTCAGTTTTTTCTTGGAGA
GCATACTTGTTCATGGTGAGGGCCTGTATATTATTTGGATTTTTCTCACA
CATGAGGGGGAAGACTGGATTATTCTGCTAGTGGGTTTGCAGAAGGTTGT
TCCAGTTGCAAAGACAAAGGCGTCCTCTCTCATTTGGGAGATGTACAGTG
GGGACGACCTATTATTGCTGGGTGGATTATGAATATTACAAGATTGACTG
GCAGGTACGTATTACATCTATGAAAATAGATGCTAATGCGATTGCAGTGT
ATTGAAGAATGCAGTTAATCTTAACCATTGTGATGGTAATAATACGGAGA
GTAGAGTTGGAATGTCCTGCTTTTGGGGCGAGCGGTGTATGTTAGATATG
AGACTCATGGAGTGGAAGGTGGTTGGTGATTATTCCTTTGTCTCTTTCTT
GGTAATGTAGTTTTCACCACAGTGAGAGTGGTTCTAGAGATGGTAGAGGT
GGTAGAGATGGTAGAGTTGGAATGACCCTTTGCCTTTCTTTTGGAGTGTA
TGTTGGTTATGGGACTTATAGAGTGGAAGGTCGTGGGTGGTGATTACCAC
TTTTTCCGATTACTGTCATGTCTGCCTCATGCCCTTGTCATGGCATGTTG
TCCTGAATGCAAACGCCAATCACCCGTGTAATAATGAAGCAAAAGAATGT
TGTTGG
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Coding sequence (CDS) from alignment at C-tenellus_contig1034:4823..7478+

>mRNA_C-tenellus_contig1034.1.1 ID=mRNA_C-tenellus_contig1034.1.1|Name=mRNA_C-tenellus_contig1034.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1611bp|location=Sequence derived from alignment at C-tenellus_contig1034:4823..7478+ (Choristocarpus tenellus KU2346)
ATGCCCATAATGATGGAAAGCAAACTTGTCCGAGTGATTGGGCTAGTCGG
GAGGTCGGGATGGTTTTTGCCGATCGAGGTCAAGCAACTTCAGCTGTCGT
CGCTGATCCTGTGTCTGGAATGCCGGTTGAAGATGACCGGCCTCTGTGTG
CGAGTCTCCAAAAGTACACCTCGTAGGCTGATCTCGGAATGTGGAATTGA
AAAGGTTAACCGAAGCTCTGTATCACGCGTGCCGCCTCTTCGTGTTGAAG
AGGTGACCTGGGACCTCAACCAACTAGGAGAGATGGCGCGATGGCCCAAG
AAACTGGGGCGACTGATTTTCAGAAAAGCACCCTCTAAGACTGAGGGCGT
GGTGTTGTCATGGCCATCAAGGCTTCATTATCTGAGGTTTGGAGAAGAAT
TTAACCAATCCTTGGATGGAGTTGTACTGCCTGAGAGCCTTGAGCGATTG
TCCTTTGGGAAATCCTTCAATCAGGATGTGGAAGGGGTGGCTTGGCCAAC
AGGGCTTCAGCAACTGATATTTGGAGCCAACTTCAACCAGCCGATTGACT
ATATTATGTTACCATCAGGGCTCCAGGAGCTGGTCTTCGGTGATTTTTTC
AACAGGAACGTGGATAATGTGGTGTGGCCATTGAGGCTCGAGCGATTGAC
GTTTGGGATCGGCTTCAACCAGTCTGTGGATGAAGTGGATTGGCCGTCGG
GTCTCCAGCAGCTGACCTTTGGGGACAGTTTTAACCAGGAGATCCAAAGG
ATAGTGTGGCCGATTGGTCTCCAGGAGCTGATATTTGGGTGGGACTTCAA
CCAGGCCGTGGATGAGGTGGCATGGCCCACAGGACTCGAGAAGCTGACTT
TTGGAATAAACTTCAATCAGCCGGTGGATGGAGTGCGGTGGCCAACGGGA
CTTCAACAGCTCACTTTTGGAGACAATTTTGACAAACCTGTGCATGGTTT
AATTTGGCCAACAGGGCTCGTGCAGCTGACCTTCGGACTCTTGTTCAATC
AGTCATTAGACGGCGTGCTTTGGCCAATTGGTCTTCAGGTACTGACTTTT
GGAGTTTGCTTTAACCAGGCACTCGACAGAGTGGAGTGGCCGACAGGACT
CTGTCAACTGACCTTTGGGAGGGGCTTCAACCAGGCGTTGGAAGGGGTGA
TTTGGCCGGGTGGACTACGCAAAATATCTCTTGACTACAACTTCAACCAA
CCAGTGGAAAGGGTGCCTTGGCCAGCTGATCTGGAGGAGCTTACCTTCGG
GGACTGCTTTGACCAGAGTATTGAGAAGGTGGTCTGGCCGTTAGGTATAA
AACGACTGGCGTTTGGAAAATGTTTCAATCACTCAGTGGAGGAAGTTACT
TGGCCAGTAGGACTAAAGAAGGTGAATTTCGGATATGGCTTCAACCAGAA
TTTGGATGGAGTGGTGTGGCCGACAGGTCTCTTGCAGCTGACGTTTGGTG
GAAAAGCGGGGCACTCAGGTGTGTTTGGGCGAGAACTGGATGAGGTCATT
CGTGTCGACCGAGAGAACATGTCATCCGACATACTGACCTACTACAATGA
GTGGGTTGAAGAAGGTAAGGTTCGACCGAAGAGAGGAAATCTCCGCCTGA
ACGTTTGTTGA
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