mRNA_C-tenellus_contig10316.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10316.1.1
Unique NamemRNA_C-tenellus_contig10316.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10316.1.1 vs. uniprot
Match: A0A6H5JKV5_9PHAE (PX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKV5_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 6.740e-68
Identity = 108/136 (79.41%), Postives = 120/136 (88.24%), Query Frame = 1
Query:  166 LSYKLSVNTSTDRADFQYGQFSVIRRFKDFVWLTQRLEEEFPGIVMPALPVKMNLGKFDQVFIEKRRKELEKFLNRVAGHDELSSSQYFKTFLQADDAGLADTKDKHKAEQAPVGARHVLKWWGEAVTHVKTHVDK 573
            ++YK  V+TSTDR DFQYGQF+VIRRFKDFVWL+ RLEEEFPG+VMPALPVKM +GKFDQ F+EKRRKELE FLNRVA H ELS+SQYFKTFLQADDAGLADTKDK KAE+ PVG  HVL+W+GE  THVKT VDK
Sbjct:   48 ITYK--VHTSTDRPDFQYGQFTVIRRFKDFVWLSHRLEEEFPGMVMPALPVKMVVGKFDQTFVEKRRKELEIFLNRVAAHGELSASQYFKTFLQADDAGLADTKDKEKAERVPVGPHHVLRWFGEVATHVKTQVDK 181          
BLAST of mRNA_C-tenellus_contig10316.1.1 vs. uniprot
Match: A0A835Z9B1_9STRA (Sorting nexin 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B1_9STRA)

HSP 1 Score: 143 bits (360), Expect = 9.670e-38
Identity = 76/138 (55.07%), Postives = 97/138 (70.29%), Query Frame = 1
Query:  166 LSYKLSVNTSTDRADFQYGQFSVIRRFKDFVWLTQRLEEEFPGIVMPALPVKMNLGKFDQVFIEKRRKELEKFLNRVAGHDELSSSQYFKTFLQADDAGLADTKDK----HKAEQAPVGARHVLKWWGEAVTHVKTHV 567
            ++YK  +NT+TDR DFQYGQFSVIRRFKDFVWL++RL EEFPG++ P LP K  L +FD   IE+RR ELE +L RVA H ELS +  F  FLQADDA +AD K++     K ++   GA  + + WG AVT VK+ +
Sbjct:   18 ITYK--INTTTDRPDFQYGQFSVIRRFKDFVWLSERLGEEFPGVINPPLPDKETLKRFDPEHIERRRVELEHYLGRVAAHGELSGAPVFMAFLQADDAAMADKKEEAKVARKEDKGGPGAE-LKRHWGWAVTMVKSQM 152          
BLAST of mRNA_C-tenellus_contig10316.1.1 vs. uniprot
Match: A0A7S3JUY8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUY8_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.240e-35
Identity = 68/133 (51.13%), Postives = 91/133 (68.42%), Query Frame = 1
Query:  166 LSYKLSVNTSTDRADFQYGQFSVIRRFKDFVWLTQRLEEEFPGIVMPALPVKMNLGKFDQVFIEKRRKELEKFLNRVAGHDELSSSQYFKTFLQADDAGLADTKDKHKAEQAPV---GARHVLKWWGEAVTHV 555
            +SYK  VNT T+  +F YGQFSVIRR+ DF+WL+++L  + PG ++P LP K  +G+F   FIE RR+ LEKFLNR+  HDELS+S+YF+ FLQADD GLA  K + KAEQ  V   G   +  W+ E +  +
Sbjct:   37 ISYK--VNTQTNLPEFNYGQFSVIRRYSDFIWLSEQLARDVPGAIVPPLPEKAVVGRFSAEFIESRRRLLEKFLNRLGAHDELSASKYFRLFLQADDGGLASAKAERKAEQIAVKKSGLSGISNWFDETMNSI 167          
BLAST of mRNA_C-tenellus_contig10316.1.1 vs. uniprot
Match: A0A8J2WT43_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WT43_9STRA)

HSP 1 Score: 125 bits (315), Expect = 6.710e-31
Identity = 59/111 (53.15%), Postives = 81/111 (72.97%), Query Frame = 1
Query:  166 LSYKLSVNTSTDRADFQYGQFSVIRRFKDFVWLTQRLEEEFPGIVMPALPVKMNLGKFDQVFIEKRRKELEKFLNRVAGHDELSSSQYFKTFLQADDAGLADTKDKHKAEQ 498
            +SYK  VNT+T+R +F YGQF VIRR+ DF WL+ RL  + PG ++P LP K  +G+F   F+E RR++LE+FL + A H+ELS S YF+TFLQADDAGL + K + K ++
Sbjct:   37 VSYK--VNTATNREEFSYGQFGVIRRYSDFAWLSDRLARDVPGAIVPPLPDKAVVGRFGADFVESRRRQLERFLQQTAEHEELSKSHYFQTFLQADDAGLLNAKAEAKVQE 145          
BLAST of mRNA_C-tenellus_contig10316.1.1 vs. uniprot
Match: F0YAT7_AURAN (PX domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAT7_AURAN)

HSP 1 Score: 124 bits (311), Expect = 1.420e-30
Identity = 64/113 (56.64%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  166 LSYKLSVNTSTDRADFQYGQFSVIRRFKDFVWLTQRLEEEFPGIVMPALPVKMNLGKFDQVFIEKRRKELEKFLNRVAGHDELSSSQYFKTFLQADDAGLADTKDKHK-AEQA 501
            +SYK  VNT T+  +FQYGQFSVIRR+ DFVWL   L+++ PG ++P LP K  +G+F   F+E RR+ LEKF  R+A H+ELS S+YFK FLQADDAGL+  K + K AE+A
Sbjct:   19 ISYK--VNTQTNLPEFQYGQFSVIRRYSDFVWLHDMLQKDVPGSIVPPLPEKAVVGRFSADFVESRRRLLEKFCVRLAAHEELSDSKYFKLFLQADDAGLSVAKAEQKLAEKA 129          
BLAST of mRNA_C-tenellus_contig10316.1.1 vs. uniprot
Match: A0A067BX66_SAPPC (PX domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BX66_SAPPC)

HSP 1 Score: 105 bits (263), Expect = 2.140e-23
Identity = 57/131 (43.51%), Postives = 79/131 (60.31%), Query Frame = 1
Query:  166 LSYKLSVNTSTDRADFQYGQFSVIRRFKDFVWLTQRLEEEFPGIVMPALPVKMNLGKFDQVFIEKRRKELEKFLNRVAGHDELSSSQYFKTFLQADDAGLA----DTKDKHKAEQAPVGARHVLKWWGEAV 546
            +SYK+S  T+TDR  FQ GQFSV+RRF DFVWL   L   FPG+++P LP K+ +G+F   FIE RR+ L  FL R A H E+  S+Y   FL+A D  L+    D   K K + +  G   + +W+ + +
Sbjct:   54 ISYKIS--TTTDRRQFQKGQFSVVRRFSDFVWLHASLCSLFPGVIVPPLPEKLLVGRFSPEFIEARRRALHLFLRRCAVHPEIQHSEYLTVFLEASDESLSAFKHDVLAKSKGKSSSGGG--LFQWFDDTI 180          
BLAST of mRNA_C-tenellus_contig10316.1.1 vs. uniprot
Match: A0A7S2FTK2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FTK2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 6.370e-23
Identity = 52/104 (50.00%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  166 LSYKLSVNTSTDRADFQYGQFSVIRRFKDFVWLTQRLEEEFPGIVMPALPVKMNLGKFDQVFIEKRRKELEKFLNRVAGHDELSSSQYFKTFLQADDAGLADTK 477
            +SYK  VNT T   D+ Y QFSVIRR+ DFVW+ + L    PG ++P LP K  + +F   F+E RR+ LE+FLNR A H  L+    FKTFLQADD  L+  K
Sbjct:   70 ISYK--VNTETSLPDYDYKQFSVIRRYSDFVWVREALLSHLPGAIIPPLPEKAVMNRFSPEFVESRRRALERFLNRCASHPLLAVHSTFKTFLQADDERLSKAK 171          
BLAST of mRNA_C-tenellus_contig10316.1.1 vs. uniprot
Match: A0A1V9Z5R4_9STRA (Sorting nexin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z5R4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.970e-22
Identity = 55/131 (41.98%), Postives = 81/131 (61.83%), Query Frame = 1
Query:  166 LSYKLSVNTSTDRADFQYGQFSVIRRFKDFVWLTQRLEEEFPGIVMPALPVKMNLGKFDQVFIEKRRKELEKFLNRVAGHDELSSSQYFKTFLQADDAGLADTKD----KHKAEQAPVGARHVLKWWGEAV 546
            +SYK  + T+T+R  F+  QFSVIRRF DFVWL   L   +PG+++P LP K+ +G+F   F+E RR+ L+ FL+R A H E+ +S+YF  FL+A D  L   K     K KA+ A  G   + +W+ + +
Sbjct:   48 ISYK--ITTNTERRQFKMPQFSVIRRFSDFVWLHGSLCSLYPGVIVPPLPEKLLVGRFSPEFVESRRRALQVFLSRCAVHPEIQNSEYFTVFLEAQDDALQHFKQEALTKSKAKHAGSGMG-LFQWFDDTI 175          
BLAST of mRNA_C-tenellus_contig10316.1.1 vs. uniprot
Match: W4FQ38_9STRA (PX domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQ38_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.290e-22
Identity = 54/113 (47.79%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  166 LSYKLSVNTSTDRADFQYGQFSVIRRFKDFVWLTQRLEEEFPGIVMPALPVKMNLGKFDQVFIEKRRKELEKFLNRVAGHDELSSSQYFKTFLQADDAGLADTK-DKHKAEQA 501
            +SYK  + TSTDR  FQ  QFSVIRRF DFVWL   L  ++PG+V+P LP K+ +G+F   F+E RR+ L  FL R   H E+  S +  TFL+A D  L   K DK K   +
Sbjct:   82 ISYK--ITTSTDRRQFQKSQFSVIRRFSDFVWLHASLCAQYPGVVVPPLPEKLLVGRFSPEFVESRRRALHLFLCRCGAHPEIQHSDHLTTFLEASDDALTHFKADKAKGSSS 192          
BLAST of mRNA_C-tenellus_contig10316.1.1 vs. uniprot
Match: A0A7S2CHT8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHT8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.290e-22
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  166 LSYKLSVNTSTDRADFQYGQFSVIRRFKDFVWLTQRLEEEFPGIVMPALPVKMNLGKFDQVFIEKRRKELEKFLNRVAGHDELSSSQYFKTFLQADDAGLADTKD 480
            +SYK  VNT T   ++ Y QFSVIRR+ DFVWL + L +  PG ++P LP K  + +F   F+E RR+ LE+FLNR A H   S ++ FKTFL ADD  L  TK+
Sbjct:   41 ISYK--VNTETTLEEYDYNQFSVIRRYSDFVWLRETLLKSLPGAIIPPLPEKAMMNRFAPEFVEGRRRALERFLNRCAEHPLASKNETFKTFLLADDDKLKKTKE 143          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10316.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKV5_9PHAE6.740e-6879.41PX domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A835Z9B1_9STRA9.670e-3855.07Sorting nexin 1 n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S3JUY8_9STRA2.240e-3551.13Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2WT43_9STRA6.710e-3153.15Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YAT7_AURAN1.420e-3056.64PX domain-containing protein (Fragment) n=1 Tax=Au... [more]
A0A067BX66_SAPPC2.140e-2343.51PX domain-containing protein n=2 Tax=Saprolegnia T... [more]
A0A7S2FTK2_9STRA6.370e-2350.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A1V9Z5R4_9STRA1.970e-2241.98Sorting nexin n=1 Tax=Thraustotheca clavata TaxID=... [more]
W4FQ38_9STRA2.290e-2247.79PX domain-containing protein n=1 Tax=Aphanomyces a... [more]
A0A7S2CHT8_9STRA3.290e-2249.52Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10316contigC-tenellus_contig10316:171..2590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LM83
Preferred nameSNX1
PFAMsPX,Vps5
Model size573
Max annot lvl2759|Eukaryota
KEGG koko:K17917,ko:K17921
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006897,GO:0006996,GO:0007034,GO:0007041,GO:0007275,GO:0008104,GO:0008150,GO:0008289,GO:0008333,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009958,GO:0009987,GO:0010008,GO:0010252,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019898,GO:0022622,GO:0030904,GO:0031090,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0042592,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098796,GO:0098805,GO:0099402
Exons4
Evalue7.93e-69
EggNOG OGsCOG5391@1|root,KOG2273@2759|Eukaryota
Descriptionphosphatidylinositol binding
Cds size573
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789125.9120536-CDS-C-tenellus_contig10316:170..2961680789125.9120536-CDS-C-tenellus_contig10316:170..296Choristocarpus tenellus KU2346CDSC-tenellus_contig10316 171..296 -
1680789125.9302042-CDS-C-tenellus_contig10316:1674..17641680789125.9302042-CDS-C-tenellus_contig10316:1674..1764Choristocarpus tenellus KU2346CDSC-tenellus_contig10316 1675..1764 -
1680789125.9380076-CDS-C-tenellus_contig10316:2110..22841680789125.9380076-CDS-C-tenellus_contig10316:2110..2284Choristocarpus tenellus KU2346CDSC-tenellus_contig10316 2111..2284 -
1680789125.9494708-CDS-C-tenellus_contig10316:2407..25901680789125.9494708-CDS-C-tenellus_contig10316:2407..2590Choristocarpus tenellus KU2346CDSC-tenellus_contig10316 2408..2590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10316.1.1prot_C-tenellus_contig10316.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10316 171..2590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10316.1.1

>prot_C-tenellus_contig10316.1.1 ID=prot_C-tenellus_contig10316.1.1|Name=mRNA_C-tenellus_contig10316.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=191bp
SVGVQAQHYRLRPREAGSGHECLHYLQGGFFRITFQWSQFLLDLLVHLPA
YSALLLSYKLSVNTSTDRADFQYGQFSVIRRFKDFVWLTQRLEEEFPGIV
MPALPVKMNLGKFDQVFIEKRRKELEKFLNRVAGHDELSSSQYFKTFLQA
DDAGLADTKDKHKAEQAPVGARHVLKWWGEAVTHVKTHVDK
back to top

mRNA from alignment at C-tenellus_contig10316:171..2590-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10316.1.1 ID=mRNA_C-tenellus_contig10316.1.1|Name=mRNA_C-tenellus_contig10316.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2420bp|location=Sequence derived from alignment at C-tenellus_contig10316:171..2590- (Choristocarpus tenellus KU2346)
AGCGTCGGGGTACAGGCTCAACATTACCGTTTGCGACCCCGTGAAGCAGG ATCAGGGCATGAATGCTTACATTACCTACAAGGTGGGTTTTTCAGGATCA CTTTTCAATGGAGCCAGTTTCTCCTTGATCTGCTAGTTCACCTACCTGCG TACTCTGCTCTGTTGCTTTCCTATAAGTTATCGGTGAGGATCGTGCTGTA TGTATCCTTGCTGCTCCCAGCGTTCATTTGCCCTCTCAAAACCGTAAGTA GCTCCTCCCCCCTCATGAAATATTTTTGTTATACTCGTCTCTCTAAAATC CTGCAGGTAAACACAAGTACAGATAGGGCTGACTTCCAGTACGGTCAGTT CTCAGTGATTCGCCGCTTTAAGGACTTTGTGTGGCTGACCCAAAGACTCG AGGAGGAGTTCCCAGGAATAGTCATGCCTGCTCTCCCTGTAAAAATGAAC CTAGGAAAGTTCGACCAAGTCTTCATTGAGGTCAGTGCCAAATAGTCTAA ACATTTCCTGCTTTTCTACCACCCTCTTCATCCAGTGTTCCTACCTCTCC AAATTTACTTAGATGCTCTCGTCCATCCCTTGCCCAATCTCTTAACATGT TGTTTTCACATAAACAGTATCACTGATGATACACATTTTATGTGTATTTC CTGCCAGGGGATAAGTGCAAAACTATTATGTAGTGTTAATGTTAGCCCTA TCTCTCCTACATTAGTCATCCCATCTTGTGTCTCCACATTTTTTCCCCTG CCTCTCCCTTATATATCTTCGCCTCCACCCCCTCCCCCTATTGTTTTGGG TATCTGGATCATAATACATGGAGTAGAAGCGCCGTAAGGAACTGGAGAAG TTCCTCAATAGGGTTGCGGGGCATGATGAGCTTTCGAGCTCTCAGTACTT CAAGACTTTCCTCCAGGTGCAGCAGTGCTTTTTGGCCTTGTGATACTATC AGTGTATTTTGGTAATGAGAGTTCTATCACAGGTAGATAAAAAGTTTTTG TATCACGTTTTTTTTTTTTTTTCATGGCTTTTCTTTCTGCTCCTGCTCTT GTCTAGAGAATTTTGGTTCACTACCTTCAATTAACTCCTTCGGCCCATGT AAGACCTACTTTTTGCTTGGGTACACTGGGTGTGCTTTGTAGCCTATCCA AAAAGGAAGAGATCGGTGCGCCTCCGGACTTTAAGAATGTACAATAACTG CATCTACAATTATGGAGTCAAGTTTCGTATCTGGTGATTTAATTGAAAAC CCTGTTCAACTTCCCCCCTCGAGTTATATTTGAAAGTGGAAGGAAAAAGC TTTCCGGTAGCATGTCCTGTTGTATGTCTTGTATTTGGTGGTATAGACTC CATTTCTTTTACATCCATCTGTTTTGTTTTAGAGGCTGGAATTTGAACAC TTTGGTTGTGATTGAGGAAGTACAAAAAAAAGAAGTTTCATATTTTTTTT GTTTTCACCAAAAATCAATGTCCTAGATTGTACCTCTTGCATGTACCTTT TTTGAGCATTGAAACCTGATGCCTGGGACTGGGGCTTTGCCCGTGAATGG AGAGGCAATTCTGTTGGTATGTATATATGTATGTATATATGTATGTATGT ATGTGTGTATGTATATATATGTATGTATGTGTGTATGTATATATATATGT ATGTATGTATGTGTGTATGTATATATATATGTACGTATGTATGTATGTAT GTGTGTATGTGTGTATGTATATACATATGTATATATGTATGTATCTATGT ATATATGTATATATGTATGTATCTATGTATCTATGTGTGTATGTGTGTGC CCTCGAGTGTCCAAAGTCTCTGGCTATCTGAATCAATTGAGGTTCAGGAG TGAACCTGTGTAATGAAAAACTGCACTACAATATATCCAGTAGAAACTGG ACCTGTAGCCTGAAAGCTCGCTGTGAAGCTCCTCTGGGCCACACATGCTC TCAGCAAAATTAGCCCTCTCAAATAGAAAATGGCTTTGGGACTATGAGGT AAAGGTGTTGGGGGAGGAGGAGAGGAACTTGATGCACATGGAATTCGTGT GTGAGAAGGGGCATTGTTTGTATCTGTTTTGTGCTGATGGTAGTATTTTT TTTGGCAGGGGGGAGGGGCACGGGGCTTAATTAAGTAAAGTAAAAGCAAG TTTGTTGTTGGGGATTGGTTGAGTATTGTGTTAAGGCATTTGGTAGTATT AGAGTTCAGTCCTTACACTGTGCCTCTCCGTCCATCAGTTCATCCTGTAT CGACTTTTTCATGAATATGACTTCTGTGCACTGGGCATACACAGGCAGAT GATGCTGGTCTGGCAGACACCAAGGACAAGCACAAGGCGGAGCAGGCTCC TGTGGGTGCCAGGCATGTGCTCAAGTGGTGGGGGGAGGCAGTTACCCACG TTAAGACTCATGTCGACAAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10316:171..2590-

>mRNA_C-tenellus_contig10316.1.1 ID=mRNA_C-tenellus_contig10316.1.1|Name=mRNA_C-tenellus_contig10316.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=573bp|location=Sequence derived from alignment at C-tenellus_contig10316:171..2590- (Choristocarpus tenellus KU2346)
AGCGTCGGGGTACAGGCTCAACATTACCGTTTGCGACCCCGTGAAGCAGG
ATCAGGGCATGAATGCTTACATTACCTACAAGGTGGGTTTTTCAGGATCA
CTTTTCAATGGAGCCAGTTTCTCCTTGATCTGCTAGTTCACCTACCTGCG
TACTCTGCTCTGTTGCTTTCCTATAAGTTATCGGTAAACACAAGTACAGA
TAGGGCTGACTTCCAGTACGGTCAGTTCTCAGTGATTCGCCGCTTTAAGG
ACTTTGTGTGGCTGACCCAAAGACTCGAGGAGGAGTTCCCAGGAATAGTC
ATGCCTGCTCTCCCTGTAAAAATGAACCTAGGAAAGTTCGACCAAGTCTT
CATTGAGAAGCGCCGTAAGGAACTGGAGAAGTTCCTCAATAGGGTTGCGG
GGCATGATGAGCTTTCGAGCTCTCAGTACTTCAAGACTTTCCTCCAGGCA
GATGATGCTGGTCTGGCAGACACCAAGGACAAGCACAAGGCGGAGCAGGC
TCCTGTGGGTGCCAGGCATGTGCTCAAGTGGTGGGGGGAGGCAGTTACCC
ACGTTAAGACTCATGTCGACAAG
back to top