prot_C-tenellus_contig10307.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10307.1.1
Unique Nameprot_C-tenellus_contig10307.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length102
Homology
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BLAST of mRNA_C-tenellus_contig10307.1.1 vs. uniprot
Match: A0A6H5KS36_9PHAE (Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS36_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 9.460e-45
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 0 
Query:    2 CKRRRRRFNVQCKEKGHEQKGVKATLRYFECTNCHRRCSSTERAGPQTGCENCGKHNAWQRCGAHSGKGPATGQRDKRFVAALSEWTDQRDLSLAATDCR 101
            CK RR RFN  CK+ GH+QKGVKATLR+FECTNC +RCSSTER  P+TGCE+CG+H+ W+RCGA  G+GPA G RDKRFVAALSEWTDQRDLSLAA DCR
Sbjct:  751 CKTRRSRFNKHCKDLGHDQKGVKATLRFFECTNCRKRCSSTERV-PRTGCESCGRHDMWKRCGARPGRGPAEGPRDKRFVAALSEWTDQRDLSLAAPDCR 849
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BLAST of mRNA_C-tenellus_contig10307.1.1 vs. uniprot
Match: D8LM23_ECTSI (Protein MCM10 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM23_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.970e-35
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 0 
Query:    1 QCKRRRRRFNVQCKEKGHEQKGVKATLRYFECTNCHRRCSSTERAGPQTGCENCGKHNAWQRCGAHSGKGPATGQRDKRFVAALSEWTDQR 91
            QCK RR RFN +C++ GH+QKGVKATLR+FECTNC +RCSSTER  P+TGCE+CG+H+ W+RCGA  G+GPA G RDKRFVAALSE   +R
Sbjct:  373 QCKTRRSRFNKRCRDLGHDQKGVKATLRFFECTNCRKRCSSTERV-PRTGCESCGRHDMWKRCGARPGRGPAEGPRDKRFVAALSESGGER 462
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10307.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KS36_9PHAE9.460e-4576.00Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LM23_ECTSI2.970e-3569.23Protein MCM10 homolog n=1 Tax=Ectocarpus siliculos... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015411Replication factor Mcm10, C-terminalPFAMPF09332Mcm10coord: 10..69
e-value: 4.4E-6
score: 26.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10307contigC-tenellus_contig10307:112..3291 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10307.1.1mRNA_C-tenellus_contig10307.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10307 112..3291 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10307.1.1 ID=prot_C-tenellus_contig10307.1.1|Name=mRNA_C-tenellus_contig10307.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=102bp
QCKRRRRRFNVQCKEKGHEQKGVKATLRYFECTNCHRRCSSTERAGPQTG
CENCGKHNAWQRCGAHSGKGPATGQRDKRFVAALSEWTDQRDLSLAATDC
R*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015411Rep_factor_Mcm10_C