mRNA_C-tenellus_contig10300.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10300.1.1
Unique NamemRNA_C-tenellus_contig10300.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10300.1.1 vs. uniprot
Match: D8LBM3_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBM3_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.210e-7
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 TTMLGMMGVGGQYNFDPLNFAALSISMIGSFVYSWAKISKR 123
            TT++GM+G+G  Y F+ LN A + +SM GSF+YSWAK+ KR
Sbjct:  327 TTVVGMLGMGDDYEFEALNCAGMVVSMGGSFLYSWAKVMKR 367
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10300.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBM3_ECTSI1.210e-756.10TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10300contigC-tenellus_contig10300:81..206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBM3
PFAMsTPT
Model size126
Max annot lvl2759|Eukaryota
KEGG koko:K15281
KEGG TC2.A.7.15
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.05e-07
EggNOG OGsCOG5070@1|root,KOG1444@2759|Eukaryota
Descriptionnucleotide-sugar transmembrane transporter activity
Cds size120
COG categoryGOU
BRITEko00000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789125.22517-UTR-C-tenellus_contig10300:80..861680789125.22517-UTR-C-tenellus_contig10300:80..86Choristocarpus tenellus KU2346UTRC-tenellus_contig10300 81..86 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789125.2375202-CDS-C-tenellus_contig10300:86..2061680789125.2375202-CDS-C-tenellus_contig10300:86..206Choristocarpus tenellus KU2346CDSC-tenellus_contig10300 87..206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10300.1.1prot_C-tenellus_contig10300.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10300 87..206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10300.1.1

>prot_C-tenellus_contig10300.1.1 ID=prot_C-tenellus_contig10300.1.1|Name=mRNA_C-tenellus_contig10300.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=40bp
MLGMMGVGGQYNFDPLNFAALSISMIGSFVYSWAKISKR*
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mRNA from alignment at C-tenellus_contig10300:81..206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10300.1.1 ID=mRNA_C-tenellus_contig10300.1.1|Name=mRNA_C-tenellus_contig10300.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=126bp|location=Sequence derived from alignment at C-tenellus_contig10300:81..206+ (Choristocarpus tenellus KU2346)
ACCACCATGCTGGGAATGATGGGAGTGGGGGGCCAATACAACTTTGATCC
TCTCAACTTCGCCGCGCTTTCTATCAGCATGATTGGGTCGTTTGTCTATT
CATGGGCAAAGATCTCCAAGCGATAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10300:81..206+

>mRNA_C-tenellus_contig10300.1.1 ID=mRNA_C-tenellus_contig10300.1.1|Name=mRNA_C-tenellus_contig10300.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=120bp|location=Sequence derived from alignment at C-tenellus_contig10300:81..206+ (Choristocarpus tenellus KU2346)
ATGCTGGGAATGATGGGAGTGGGGGGCCAATACAACTTTGATCCTCTCAA
CTTCGCCGCGCTTTCTATCAGCATGATTGGGTCGTTTGTCTATTCATGGG
CAAAGATCTCCAAGCGATAA
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