mRNA_C-tenellus_contig9999.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9999.2.1
Unique NamemRNA_C-tenellus_contig9999.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9999.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9999contigC-tenellus_contig9999:2585..3360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size553
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790210.5662124-UTR-C-tenellus_contig9999:2584..26371680790210.5662124-UTR-C-tenellus_contig9999:2584..2637Choristocarpus tenellus KU2346UTRC-tenellus_contig9999 2585..2637 +
1680790210.602374-UTR-C-tenellus_contig9999:3151..33601680790210.602374-UTR-C-tenellus_contig9999:3151..3360Choristocarpus tenellus KU2346UTRC-tenellus_contig9999 3152..3360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790210.5766654-CDS-C-tenellus_contig9999:2637..27651680790210.5766654-CDS-C-tenellus_contig9999:2637..2765Choristocarpus tenellus KU2346CDSC-tenellus_contig9999 2638..2765 +
1680790210.5889602-CDS-C-tenellus_contig9999:2988..31511680790210.5889602-CDS-C-tenellus_contig9999:2988..3151Choristocarpus tenellus KU2346CDSC-tenellus_contig9999 2989..3151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9999.2.1prot_C-tenellus_contig9999.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9999 2638..3151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9999.2.1

>prot_C-tenellus_contig9999.2.1 ID=prot_C-tenellus_contig9999.2.1|Name=mRNA_C-tenellus_contig9999.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=97bp
MFASDGASHTWRGWAWFFYGCARVPLHQDPNNRLTWFSQPSTITSLETVL
KEVVVPCTLLVRMREWLSPHSMPMFTFGQSSPDRRVDLHTNTKEIV*
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mRNA from alignment at C-tenellus_contig9999:2585..3360+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9999.2.1 ID=mRNA_C-tenellus_contig9999.2.1|Name=mRNA_C-tenellus_contig9999.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=776bp|location=Sequence derived from alignment at C-tenellus_contig9999:2585..3360+ (Choristocarpus tenellus KU2346)
GTCGTTGGTGGTTATTGTGAAAATTGTGATGCATAAACCGCACGCAATCG
GAAATGTTTGCCTCCGATGGGGCTTCTCACACTTGGAGAGGGTGGGCTTG
GTTCTTTTATGGATGTGCACGGGTGCCCTTGCACCAGGACCCAAACAATC
GATTGACTTGGTTCAGCCAGCCCTCAACAATGTTCTTAATCCACAAATCC
AGTCGGTTTATAAGTACAGATTTCTTTGCATGTGTTGTAGGTCATTATGC
TGCTGGAAGGGCAAGGTACTTTGACCTCACAGACCTTTTCTTCTAGTCAG
AGGTCCTGCAATTCACCTATATTGAAATACTACGTAGTATTGTATTGTCG
CTACAGAGGACACCCCAACCTTCTCAATGCTGACACTAAAAACATCTCAC
ACAGCACAAGTCTTGAAACAGTGCTCAAGGAAGTTGTGGTTCCTTGCACA
CTATTGGTGAGGATGAGAGAATGGTTATCTCCACATTCAATGCCCATGTT
CACCTTTGGACAATCCAGTCCGGACAGGAGGGTAGATTTACATACAAATA
CCAAGGAGATAGTTTGAACTTGTTGACTTTGTCCTACTTCCCTCCCCCGC
TCCCATCACCCCCAGAGGCTCGCGGTTGCAAGGCTTGTGGACTGGTTGTG
TGTGCCATCTTTTTCAACAGGCTCCTGTTGGTTTAGTTGTAATGGTCAAT
CAATATTCATTGCTCTCCCACTGCCTTCAGCAATTTGGCACAGATGTCGA
GGAGGCAGGCCGGAGTGCAAAACTGG
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Coding sequence (CDS) from alignment at C-tenellus_contig9999:2585..3360+

>mRNA_C-tenellus_contig9999.2.1 ID=mRNA_C-tenellus_contig9999.2.1|Name=mRNA_C-tenellus_contig9999.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=291bp|location=Sequence derived from alignment at C-tenellus_contig9999:2585..3360+ (Choristocarpus tenellus KU2346)
ATGTTTGCCTCCGATGGGGCTTCTCACACTTGGAGAGGGTGGGCTTGGTT
CTTTTATGGATGTGCACGGGTGCCCTTGCACCAGGACCCAAACAATCGAT
TGACTTGGTTCAGCCAGCCCTCAACAATCACAAGTCTTGAAACAGTGCTC
AAGGAAGTTGTGGTTCCTTGCACACTATTGGTGAGGATGAGAGAATGGTT
ATCTCCACATTCAATGCCCATGTTCACCTTTGGACAATCCAGTCCGGACA
GGAGGGTAGATTTACATACAAATACCAAGGAGATAGTTTGA
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