mRNA_C-tenellus_contig9985.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9985.1.1
Unique NamemRNA_C-tenellus_contig9985.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9985.1.1 vs. uniprot
Match: D7G660_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G660_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 7.890e-37
Identity = 73/98 (74.49%), Postives = 81/98 (82.65%), Query Frame = 1
Query:    1 TPGRLRVVFASNALATPFAAGVLLFPYPWCFMSLLCAELLGEMWIGVVLTVVMALVPRGVRVTSVALYNFIITNISGLAAALVPMIRAYYETERTFYF 294
            T GRL VV  SNALA+PFA GVLL PYPWCF+ LL  ELLGEMWIGVVL VV+ALVPR VR+TSVALYNFIITNISGL+  LVP+IR  Y++E TF F
Sbjct:  501 TAGRLWVVIVSNALASPFAVGVLLAPYPWCFLCLLGVELLGEMWIGVVLAVVIALVPRHVRITSVALYNFIITNISGLSTTLVPLIRGRYDSEHTFSF 598          
BLAST of mRNA_C-tenellus_contig9985.1.1 vs. uniprot
Match: A0A6H5L2A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A6_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.060e-36
Identity = 72/98 (73.47%), Postives = 81/98 (82.65%), Query Frame = 1
Query:    1 TPGRLRVVFASNALATPFAAGVLLFPYPWCFMSLLCAELLGEMWIGVVLTVVMALVPRGVRVTSVALYNFIITNISGLAAALVPMIRAYYETERTFYF 294
            T GRL VV  SNALA+PFA GVLL PYPWCF+ LL  ELLGEMWIGVVL VV+ALVPR VR+TSVA+YNFIITNISGL+  LVP+IR  Y++E TF F
Sbjct:  551 TAGRLWVVIVSNALASPFAVGVLLAPYPWCFVCLLGVELLGEMWIGVVLAVVIALVPRQVRITSVAMYNFIITNISGLSTTLVPLIRGRYDSEHTFSF 648          
BLAST of mRNA_C-tenellus_contig9985.1.1 vs. uniprot
Match: A0A1S3HS59_LINUN (protein spinster homolog 1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HS59_LINUN)

HSP 1 Score: 89.0 bits (219), Expect = 1.380e-18
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   10 RLRVVFASNALATPFAAGVLLFPYPWCFMSLLCAELLGEMWIGVVLTVVMALVPRGVRVTSVALYNFIITNISGLAAALVPMIRAYYE 273
            R+ V+ AS  LA PFAAG L  P PW ++SL+ + ++GEMW+GV L VV+ LVP  VR ++VA+Y FIITNI G    LVP ++  +E
Sbjct:  353 RVLVLVASQVLAAPFAAGALFLPAPWAYISLIPSNIIGEMWVGVTLAVVVELVPSKVRTSAVAVYLFIITNIGGNIPLLVPPLQTAFE 440          
BLAST of mRNA_C-tenellus_contig9985.1.1 vs. uniprot
Match: W5MAW6_LEPOC (D-galactonate transporter-like n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5MAW6_LEPOC)

HSP 1 Score: 87.8 bits (216), Expect = 3.420e-18
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   10 RLRVVFASNALATPFAAGVLLFPYPWCFMSLLCAELLGEMWIGVVLTVVMALVPRGVRVTSVALYNFIITNISGLAAALVPMIRAYYE 273
            R+ V+  S  LA PF  GVL+ P P+CF+ L+ A ++GEMW+GV L +++ LVP  VR +SVA Y FIITNI G A  LVP++   Y 
Sbjct:  353 RIWVLVVSQILAAPFLIGVLILPPPYCFLLLIPANIIGEMWVGVALAILVELVPSAVRTSSVAFYLFIITNIGGNAPLLVPLLAKLYN 440          
BLAST of mRNA_C-tenellus_contig9985.1.1 vs. uniprot
Match: UPI001604F53C (protein spinster homolog 1 isoform X1 n=4 Tax=Folsomia candida TaxID=158441 RepID=UPI001604F53C)

HSP 1 Score: 85.1 bits (209), Expect = 3.260e-17
Identity = 43/90 (47.78%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    7 GRLRVVFASNALATPFAAGVLLFPYPWCFMSLLCAELLGEMWIGVVLTVVMALVPRGVRVTSVALYNFIITNISGLAAALVPMIRAYYET 276
            GR+ V+  S  LA PFAAG L+ P P+ +MSL+   ++GEMW+ V L V++ LVP  ++ TSVA+Y FII+NI G    LVP++R  +E+
Sbjct:  400 GRIWVLIMSQILAAPFAAGALVLPPPYAYMSLIPTYIIGEMWVSVTLAVLVELVPAKIKTTSVAVYFFIISNIGGNMPLLVPVLRPAFES 489          
BLAST of mRNA_C-tenellus_contig9985.1.1 vs. uniprot
Match: B3RN70_TRIAD (MFS domain-containing protein (Fragment) n=2 Tax=Trichoplax TaxID=10227 RepID=B3RN70_TRIAD)

HSP 1 Score: 84.3 bits (207), Expect = 5.270e-17
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   10 RLRVVFASNALATPFAAGVLLFPYPWCFMSLLCAELLGEMWIGVVLTVVMALVPRGVRVTSVALYNFIITNISGLAAALVPMI 258
            RL V+  S A+A+PFA   LL P PW F++L+ + ++GEMWIGV L V++ +VP  +R  +VA+Y FIITNI GL   L+P I
Sbjct:  340 RLWVLIMSQAVASPFALLTLLLPPPWAFIALIPSNIIGEMWIGVTLAVIVEVVPSNIRTVAVAIYLFIITNIGGLMPLLIPPI 422          
BLAST of mRNA_C-tenellus_contig9985.1.1 vs. uniprot
Match: UPI000359636C (protein spinster homolog 1 isoform X1 n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI000359636C)

HSP 1 Score: 84.3 bits (207), Expect = 6.110e-17
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   10 RLRVVFASNALATPFAAGVLLFPYPWCFMSLLCAELLGEMWIGVVLTVVMALVPRGVRVTSVALYNFIITNISGLAAALVPMIRAYYE 273
            R+ V+ AS  LA PFAAG L    PW F SL+ A ++GEMW+GV L V + LVP  +R ++VALY FII+NI G    LVP I+  +E
Sbjct:  452 RVIVLVASQFLAAPFAAGALFLDVPWAFFSLIPANIIGEMWVGVTLAVGVELVPSEIRTSAVALYLFIISNIGGNVPLLVPPIQEAFE 539          
BLAST of mRNA_C-tenellus_contig9985.1.1 vs. uniprot
Match: A0A1D2NCK7_ORCCI (Protein spinster 1 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NCK7_ORCCI)

HSP 1 Score: 83.6 bits (205), Expect = 1.040e-16
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    7 GRLRVVFASNALATPFAAGVLLFPYPWCFMSLLCAELLGEMWIGVVLTVVMALVPRGVRVTSVALYNFIITNISGLAAALVPMIRAYYET 276
            GR+ V+  S  LA PFAAG LL P P+ ++SL+   ++GEMW+ V L V++ LVP  ++ TSVA+Y FII+NI G    LVP++R  +++
Sbjct:  307 GRIWVLILSQVLAAPFAAGALLLPTPYAYISLIPNYIIGEMWVSVTLAVLVELVPSYIKTTSVAVYFFIISNIGGNMPLLVPVLRPIFQS 396          
BLAST of mRNA_C-tenellus_contig9985.1.1 vs. uniprot
Match: A0A8J1U014_OWEFU (Ofus.G082900 protein n=2 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U014_OWEFU)

HSP 1 Score: 82.8 bits (203), Expect = 2.020e-16
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   10 RLRVVFASNALATPFAAGVLLFPYPWCFMSLLCAELLGEMWIGVVLTVVMALVPRGVRVTSVALYNFIITNISGLAAALVPMIRAYYE 273
            R+ V+  S  +A PFAAG L    PWC++SL+ A ++GEMW+GV L VV+ LVP  VR  ++A Y FII+NI G    LVP I+  ++
Sbjct:  350 RIMVLVISQLVAAPFAAGALFLNPPWCYISLIPANIVGEMWVGVTLAVVIELVPWSVRTGAIAFYLFIISNIGGNVPLLVPPIQKAFQ 437          
BLAST of mRNA_C-tenellus_contig9985.1.1 vs. uniprot
Match: A0A3S0ZD38_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZD38_ELYCH)

HSP 1 Score: 82.4 bits (202), Expect = 2.770e-16
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   10 RLRVVFASNALATPFAAGVLLFPYPWCFMSLLCAELLGEMWIGVVLTVVMALVPRGVRVTSVALYNFIITNISGLAAALVPMIRAYYE 273
            R+ V+ AS  +A PFAAG L    PW F+SL+ A ++GEMW+GV L V + LVP  VR ++VA+Y FII+NI G    LVP I+  +E
Sbjct:  352 RIFVLVASQFVAAPFAAGALFLDVPWSFISLIPANIIGEMWVGVTLAVGVELVPAQVRTSAVAVYLFIISNIGGNVPLLVPPIQHSFE 439          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9985.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G660_ECTSI7.890e-3774.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2A6_9PHAE3.060e-3673.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1S3HS59_LINUN1.380e-1851.14protein spinster homolog 1 n=1 Tax=Lingula unguis ... [more]
W5MAW6_LEPOC3.420e-1850.00D-galactonate transporter-like n=2 Tax=Lepisosteus... [more]
UPI001604F53C3.260e-1747.78protein spinster homolog 1 isoform X1 n=4 Tax=Fols... [more]
B3RN70_TRIAD5.270e-1750.60MFS domain-containing protein (Fragment) n=2 Tax=T... [more]
UPI000359636C6.110e-1751.14protein spinster homolog 1 isoform X1 n=2 Tax=Aply... [more]
A0A1D2NCK7_ORCCI1.040e-1646.67Protein spinster 1 n=1 Tax=Orchesella cincta TaxID... [more]
A0A8J1U014_OWEFU2.020e-1647.73Ofus.G082900 protein n=2 Tax=Owenia fusiformis Tax... [more]
A0A3S0ZD38_ELYCH2.770e-1650.00Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9985contigC-tenellus_contig9985:5419..5712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G660
PFAMsMFS_1
Model size294
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.29e-37
EggNOG OGsCOG0477@1|root,KOG1330@2759|Eukaryota
Descriptionsphingolipid transporter activity
Cds size294
COG categoryEGP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790210.0727735-CDS-C-tenellus_contig9985:5418..57121680790210.0727735-CDS-C-tenellus_contig9985:5418..5712Choristocarpus tenellus KU2346CDSC-tenellus_contig9985 5419..5712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9985.1.1prot_C-tenellus_contig9985.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9985 5419..5712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9985.1.1

>prot_C-tenellus_contig9985.1.1 ID=prot_C-tenellus_contig9985.1.1|Name=mRNA_C-tenellus_contig9985.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=98bp
TPGRLRVVFASNALATPFAAGVLLFPYPWCFMSLLCAELLGEMWIGVVLT
VVMALVPRGVRVTSVALYNFIITNISGLAAALVPMIRAYYETERTFYF
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mRNA from alignment at C-tenellus_contig9985:5419..5712-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9985.1.1 ID=mRNA_C-tenellus_contig9985.1.1|Name=mRNA_C-tenellus_contig9985.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=294bp|location=Sequence derived from alignment at C-tenellus_contig9985:5419..5712- (Choristocarpus tenellus KU2346)
ACCCCCGGCCGTCTAAGAGTGGTCTTTGCCTCCAACGCCCTCGCTACACC CTTCGCCGCCGGGGTGCTGCTGTTCCCATACCCGTGGTGCTTCATGAGCC TCCTGTGTGCGGAGCTCTTGGGAGAGATGTGGATAGGGGTCGTACTCACG GTTGTCATGGCCCTGGTTCCTCGAGGGGTCCGTGTCACGAGCGTGGCGCT GTACAACTTCATCATCACCAACATCAGCGGCCTGGCGGCTGCCCTTGTGC CGATGATTCGCGCCTATTACGAGACTGAACGGACTTTCTACTTC
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Coding sequence (CDS) from alignment at C-tenellus_contig9985:5419..5712-

>mRNA_C-tenellus_contig9985.1.1 ID=mRNA_C-tenellus_contig9985.1.1|Name=mRNA_C-tenellus_contig9985.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=294bp|location=Sequence derived from alignment at C-tenellus_contig9985:5419..5712- (Choristocarpus tenellus KU2346)
ACCCCCGGCCGTCTAAGAGTGGTCTTTGCCTCCAACGCCCTCGCTACACC
CTTCGCCGCCGGGGTGCTGCTGTTCCCATACCCGTGGTGCTTCATGAGCC
TCCTGTGTGCGGAGCTCTTGGGAGAGATGTGGATAGGGGTCGTACTCACG
GTTGTCATGGCCCTGGTTCCTCGAGGGGTCCGTGTCACGAGCGTGGCGCT
GTACAACTTCATCATCACCAACATCAGCGGCCTGGCGGCTGCCCTTGTGC
CGATGATTCGCGCCTATTACGAGACTGAACGGACTTTCTACTTC
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