mRNA_C-tenellus_contig9984.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9984.2.1
Unique NamemRNA_C-tenellus_contig9984.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9984.2.1 vs. uniprot
Match: D7FJY6_ECTSI (Hydrocephalus-inducing protein, Hydin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY6_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.000e-10
Identity = 25/35 (71.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 LLATTLKVYEFYLTVDIDGVGEELLSLPIKADCQV 105
            L++ T+KVYE+Y+TVD++GVGEELLS+P+KADCQV
Sbjct:  755 LMSQTVKVYEYYITVDVEGVGEELLSIPLKADCQV 789
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BLAST of mRNA_C-tenellus_contig9984.2.1 vs. uniprot
Match: A0A6H5K5Z3_9PHAE (MSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z3_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.710e-8
Identity = 23/30 (76.67%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:   16 LKVYEFYLTVDIDGVGEELLSLPIKADCQV 105
            L+VYE+Y+TVD++GVGEELLS+P+KADCQV
Sbjct:  708 LQVYEYYITVDVEGVGEELLSIPLKADCQV 737
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BLAST of mRNA_C-tenellus_contig9984.2.1 vs. uniprot
Match: A0A7S2QVW6_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVW6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.860e-7
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 LLATTLKVYEFYLTVDIDGVGEELLSLPIKADCQV 105
            L++TT+K YE+ L VDI+GVGE LLSLPI ADC+V
Sbjct:   39 LISTTVKTYEYSLVVDIEGVGENLLSLPILADCKV 73
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BLAST of mRNA_C-tenellus_contig9984.2.1 vs. uniprot
Match: UPI0009E5E06D (LOW QUALITY PROTEIN: hydrocephalus-inducing protein homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5E06D)

HSP 1 Score: 50.4 bits (119), Expect = 6.560e-6
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    4 LATTLKVYEFYLTVDIDGVGEELLSLPIKADCQVT-------IPDYFLCF 132
            ++TT+K YE  L VD+DGVGEE+LSLPI A C V        I DY  CF
Sbjct:  704 VSTTVKKYEIALVVDVDGVGEEILSLPIIAKCVVPPITVSTPILDYGRCF 753
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BLAST of mRNA_C-tenellus_contig9984.2.1 vs. uniprot
Match: UPI0003F0D05C (hydrocephalus-inducing protein homolog n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0D05C)

HSP 1 Score: 50.1 bits (118), Expect = 8.980e-6
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:    1 LLATTLKVYEFYLTVDIDGVGEELLSLPIKADCQVT-------IPDYFLCF 132
            L++ T+K Y+  + VDIDGVGEE+LSLPI A C V        I DY  CF
Sbjct:  652 LISNTIKKYDMSVVVDIDGVGEEILSLPISAKCVVPAIAVVTPILDYKRCF 702
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BLAST of mRNA_C-tenellus_contig9984.2.1 vs. uniprot
Match: A0A2B4RXX1_STYPI (Hydrocephalus-inducing protein n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4RXX1_STYPI)

HSP 1 Score: 49.7 bits (117), Expect = 1.230e-5
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    4 LATTLKVYEFYLTVDIDGVGEELLSLPIKADCQVT-------IPDYFLCF 132
            ++TT+K YE  L VD+DGVGEE+LSLPI A C V        + DY  CF
Sbjct:  667 VSTTVKKYEITLVVDVDGVGEEILSLPIIAKCVVPPITVSTPLLDYGRCF 716
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BLAST of mRNA_C-tenellus_contig9984.2.1 vs. uniprot
Match: A0A8J2SKS6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKS6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.680e-5
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   13 TLKVYEFYLTVDIDGVGEELLSLPIKADCQV 105
            T+KVY+FY+ VD+  VGE LLSLP++A+C+V
Sbjct:  608 TIKVYDFYIVVDVPNVGEALLSLPVQAECKV 638
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BLAST of mRNA_C-tenellus_contig9984.2.1 vs. uniprot
Match: A0A7M7ND56_STRPU (Hydin_ADK domain-containing protein n=5 Tax=Echinacea TaxID=7674 RepID=A0A7M7ND56_STRPU)

HSP 1 Score: 48.9 bits (115), Expect = 2.300e-5
Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:    1 LLATTLKVYEFYLTVDIDGVGEELLSLPIKADCQVT-------IPDYFLCF 132
            L + +LK Y+  L VD+DGVG+ELLSLPI A C V        I DY  CF
Sbjct:  652 LTSNSLKKYDLALVVDVDGVGQELLSLPISAKCVVPSISVVTPILDYTRCF 702
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BLAST of mRNA_C-tenellus_contig9984.2.1 vs. uniprot
Match: F0Y448_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y448_AURAN)

HSP 1 Score: 48.5 bits (114), Expect = 3.150e-5
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 LLATTLKVYEFYLTVDIDGVGEELLSLPIKADCQV 105
            L   ++KVY+FYL VD+ GVG+ LLSLPI A+C V
Sbjct:  621 LTPMSVKVYDFYLVVDVPGVGDALLSLPISAECLV 655
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BLAST of mRNA_C-tenellus_contig9984.2.1 vs. uniprot
Match: UPI00077AF324 (LOW QUALITY PROTEIN: hydrocephalus-inducing protein homolog n=2 Tax=Acropora TaxID=6127 RepID=UPI00077AF324)

HSP 1 Score: 48.5 bits (114), Expect = 3.150e-5
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    4 LATTLKVYEFYLTVDIDGVGEELLSLPIKADCQVT-------IPDYFLCF 132
            ++TT+K YE  L VD+DGVG+E+LSLPI A C V        + DY  CF
Sbjct:  667 VSTTVKKYEVALVVDVDGVGDEILSLPIVAKCVVPPITISTPLLDYGRCF 716
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9984.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FJY6_ECTSI4.000e-1071.43Hydrocephalus-inducing protein, Hydin-like protein... [more]
A0A6H5K5Z3_9PHAE1.710e-876.67MSP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2QVW6_9STRA2.860e-768.57Hypothetical protein n=2 Tax=Triparma pacifica Tax... [more]
UPI0009E5E06D6.560e-654.00LOW QUALITY PROTEIN: hydrocephalus-inducing protei... [more]
UPI0003F0D05C8.980e-650.98hydrocephalus-inducing protein homolog n=1 Tax=Sac... [more]
A0A2B4RXX1_STYPI1.230e-552.00Hydrocephalus-inducing protein n=3 Tax=Pocillopori... [more]
A0A8J2SKS6_9STRA1.680e-561.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7M7ND56_STRPU2.300e-550.98Hydin_ADK domain-containing protein n=5 Tax=Echina... [more]
F0Y448_AURAN3.150e-560.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
UPI00077AF3243.150e-550.00LOW QUALITY PROTEIN: hydrocephalus-inducing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9984contigC-tenellus_contig9984:5292..5432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJY6
Preferred nameHYDIN
PFAMsASH,Hydin_ADK,Motile_Sperm,PapD-like
Model size141
Max annot lvl2759|Eukaryota
KEGG koko:K17570
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001578,GO:0002064,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0009888,GO:0009987,GO:0016043,GO:0021591,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030855,GO:0032501,GO:0032502,GO:0032838,GO:0035082,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0048468,GO:0048513,GO:0048731,GO:0048856,GO:0048869,GO:0060271,GO:0060322,GO:0060429,GO:0060438,GO:0060541,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1904158,GO:1990716,GO:1990718
Exons1
Evalue6.55e-11
EggNOG OGs28HT9@1|root,2QQ4F@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_011480.2
Descriptionaxonemal central apparatus assembly
Cds size141
COG categoryS
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790210.037711-CDS-C-tenellus_contig9984:5291..54321680790210.037711-CDS-C-tenellus_contig9984:5291..5432Choristocarpus tenellus KU2346CDSC-tenellus_contig9984 5292..5432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9984.2.1prot_C-tenellus_contig9984.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9984 5292..5432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9984.2.1

>prot_C-tenellus_contig9984.2.1 ID=prot_C-tenellus_contig9984.2.1|Name=mRNA_C-tenellus_contig9984.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=47bp
LLATTLKVYEFYLTVDIDGVGEELLSLPIKADCQVTIPDYFLCFPSL
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mRNA from alignment at C-tenellus_contig9984:5292..5432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9984.2.1 ID=mRNA_C-tenellus_contig9984.2.1|Name=mRNA_C-tenellus_contig9984.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=141bp|location=Sequence derived from alignment at C-tenellus_contig9984:5292..5432+ (Choristocarpus tenellus KU2346)
TTACTTGCCACAACACTCAAGGTGTACGAGTTCTACCTTACTGTGGATAT
AGATGGAGTGGGCGAGGAGCTCTTAAGTCTACCAATTAAGGCTGATTGTC
AGGTAACCATCCCTGACTACTTTCTTTGCTTTCCTTCATTG
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Coding sequence (CDS) from alignment at C-tenellus_contig9984:5292..5432+

>mRNA_C-tenellus_contig9984.2.1 ID=mRNA_C-tenellus_contig9984.2.1|Name=mRNA_C-tenellus_contig9984.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=141bp|location=Sequence derived from alignment at C-tenellus_contig9984:5292..5432+ (Choristocarpus tenellus KU2346)
TTACTTGCCACAACACTCAAGGTGTACGAGTTCTACCTTACTGTGGATAT
AGATGGAGTGGGCGAGGAGCTCTTAAGTCTACCAATTAAGGCTGATTGTC
AGGTAACCATCCCTGACTACTTTCTTTGCTTTCCTTCATTG
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