mRNA_C-tenellus_contig9984.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9984.1.1
Unique NamemRNA_C-tenellus_contig9984.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9984.1.1 vs. uniprot
Match: A0A6H5K5Z3_9PHAE (MSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z3_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 7.820e-42
Identity = 70/104 (67.31%), Postives = 86/104 (82.69%), Query Frame = 1
Query:   79 LQVTIFFRPDTAVEYSSRAFLDCVGREERLPLLLSAGGIGPKVVLSFDVLDMGDIFISSRHKYELTLMNKGEIAAEWSLSAPSTPFAEKFTFSPTYGKLDIKNR 390
            ++VT+FFRP T  EY S AFLDC+GREERLPL L   GIGPKVVLSFDVLDMGD+FI+SRH +++TL+N+G+IAA+W+L AP TPFA KF F P  G LD+K+R
Sbjct:  479 IEVTVFFRPRTTTEYGSHAFLDCIGREERLPLRLGGSGIGPKVVLSFDVLDMGDVFINSRHVHQVTLLNRGDIAADWTLQAPQTPFARKFRFGPMKGTLDVKDR 582          
BLAST of mRNA_C-tenellus_contig9984.1.1 vs. uniprot
Match: D7FJY6_ECTSI (Hydrocephalus-inducing protein, Hydin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY6_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 3.680e-41
Identity = 69/103 (66.99%), Postives = 85/103 (82.52%), Query Frame = 1
Query:   79 LQVTIFFRPDTAVEYSSRAFLDCVGREERLPLLLSAGGIGPKVVLSFDVLDMGDIFISSRHKYELTLMNKGEIAAEWSLSAPSTPFAEKFTFSPTYGKLDIKN 387
            ++VT+FFRP T  EY S AFLDC+GREERLPL L   GIGPKVVLSFDVLDMGD+FI+SRH +E+TL+N+G+IAA+W+L AP TPF+ KF F P  G LD+K+
Sbjct:  539 IEVTVFFRPRTTTEYGSHAFLDCIGREERLPLRLGGSGIGPKVVLSFDVLDMGDVFINSRHVHEVTLLNRGDIAADWTLQAPQTPFSRKFRFGPMKGTLDVKD 641          
BLAST of mRNA_C-tenellus_contig9984.1.1 vs. uniprot
Match: F0Y448_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y448_AURAN)

HSP 1 Score: 114 bits (285), Expect = 7.070e-27
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 1
Query:   79 LQVTIFFRPDTAVEYSSRAFLDCVGREERLPLLLSAGGIGPKVVLSFDVLDMGDIFISSRHKYELTLMNKGEIAAEWSLSAPSTPFAEKFTFSPTYGKLDI 381
            ++V++ FRPDTA +Y+  A+LD +GREERLP+ L+  GIGPK  LS+DVLDMGD+FISS ++Y L + NKG+I AEW L  P T     F FSPT G L +
Sbjct:  408 IEVSVTFRPDTAADYACTAYLDVMGREERLPIWLTGLGIGPKGALSYDVLDMGDVFISSPYEYSLGITNKGDIPAEWKLFPPPTT---TFQFSPTSGVLAV 505          
BLAST of mRNA_C-tenellus_contig9984.1.1 vs. uniprot
Match: A0A482SNA2_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNA2_9ARCH)

HSP 1 Score: 112 bits (280), Expect = 3.300e-26
Identity = 54/98 (55.10%), Postives = 68/98 (69.39%), Query Frame = 1
Query:   82 QVTIFFRPDTAVEYSSRAFLDCVGREERLPLLLSAGGIGPKVVLSFDVLDMGDIFISSRHKYELTLMNKGEIAAEWSLSAPSTPFAEKFTFSPTYGKL 375
            +VTI FRPDTA  Y+  AFLD  GR +RLPL L+  GIGP   LSFDVLD+GD+F++    YEL++ NKG+I A+W+  +  T F  KF FSPT G L
Sbjct:  331 EVTIVFRPDTAALYNCLAFLDVSGRHDRLPLQLTGQGIGPHAALSFDVLDIGDVFVNDVSTYELSIKNKGDIPAQWTFMSSLTKFGNKFQFSPTDGYL 428          
BLAST of mRNA_C-tenellus_contig9984.1.1 vs. uniprot
Match: A0A8J1XSC2_OWEFU (Ofus.G062473 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XSC2_OWEFU)

HSP 1 Score: 106 bits (264), Expect = 4.750e-24
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = 1
Query:   79 LQVTIFFRPDTAVEYSSRAFLDCVGREERLPLLLSAGGIGPKVVLSFDVLDMGDIFISSRHKYELTLMNKGEIAAEWSLSAPSTPFAEKFTFSPTYG 369
            L+VT+ F+PD A  Y+  A+ D VGRE RLPL +   GIGPKV  SFD LDMG+IFISS H YE+ L NKG+I A +SL   ++ F  +F+F+P+ G
Sbjct:  445 LEVTVIFKPDEAKTYTRTAYCDIVGRETRLPLRIKGDGIGPKVQFSFDSLDMGNIFISSSHAYEVVLANKGDIDAMFSLLPNNSVFGPRFSFNPSEG 541          
BLAST of mRNA_C-tenellus_contig9984.1.1 vs. uniprot
Match: A0A8J1XSX0_OWEFU (Ofus.G062473 protein n=2 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XSX0_OWEFU)

HSP 1 Score: 106 bits (264), Expect = 4.780e-24
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = 1
Query:   79 LQVTIFFRPDTAVEYSSRAFLDCVGREERLPLLLSAGGIGPKVVLSFDVLDMGDIFISSRHKYELTLMNKGEIAAEWSLSAPSTPFAEKFTFSPTYG 369
            L+VT+ F+PD A  Y+  A+ D VGRE RLPL +   GIGPKV  SFD LDMG+IFISS H YE+ L NKG+I A +SL   ++ F  +F+F+P+ G
Sbjct:  420 LEVTVIFKPDEAKTYTRTAYCDIVGRETRLPLRIKGDGIGPKVQFSFDSLDMGNIFISSSHAYEVVLANKGDIDAMFSLLPNNSVFGPRFSFNPSEG 516          
BLAST of mRNA_C-tenellus_contig9984.1.1 vs. uniprot
Match: A0A8J2SKS6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKS6_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.710e-23
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   79 LQVTIFFRPDTAVEYSSRAFLDCVGREERLPLLLSAGGIGPKVVLSFDVLDMGDIFISSRHKYELTLMNKGEIAAEWSLSAPSTPFAEKFTFSPTYGKLDI 381
            + + + FRPDTA +Y+  A+LD VGREERLP+ L+  GIGPK  LS+DVLD+GD+F+   + Y L++ NKG+I A W L+ P +   + F   PT G L +
Sbjct:  391 VDIHVMFRPDTAADYACTAYLDVVGREERLPVWLTGIGIGPKGALSYDVLDLGDVFVGHPYSYTLSIDNKGDIPAAWRLNPPES---DAFVVEPTQGTLAV 488          
BLAST of mRNA_C-tenellus_contig9984.1.1 vs. uniprot
Match: A0A8J1ZKQ1_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1ZKQ1_9DINO)

HSP 1 Score: 103 bits (256), Expect = 5.720e-23
Identity = 44/101 (43.56%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   79 LQVTIFFRPDTAVEYSSRAFLDCVGREERLPLLLSAGGIGPKVVLSFDVLDMGDIFISSRHKYELTLMNKGEIAAEWSLSAPSTPFAEKFTFSPTYGKLDI 381
            L VTI F P +A+ Y   A+   VG++ER+P+ L+  GIGPK   S+D +D+GDIF+ S H+YE+ ++N+G+IA  + L   ++PF  KF+F+P  G+L++
Sbjct:  429 LTVTISFSPKSALHYHCLAYCSIVGQQERIPVKLTGHGIGPKAAFSYDEMDVGDIFVESMHRYEVDIVNQGDIAVNYELIPNTSPFGSKFSFTPASGRLEV 529          
BLAST of mRNA_C-tenellus_contig9984.1.1 vs. uniprot
Match: A0A0G4EW24_VITBC (Uncharacterized protein n=11 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EW24_VITBC)

HSP 1 Score: 102 bits (255), Expect = 7.810e-23
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 1
Query:   76 SLQVTIFFRPDTAVEYSSRAFLDCVGREERLPLLLSAGGIGPKVVLSFDVLDMGDIFISSRHKYELTLMNKGEIAAEWSLSAPSTPFAEKFTFSPTYGKLDI 381
            S  VT+ F P  A+ Y   A+ D VG  ER+PLLL   GIGPK   S+D LD+GD+FI S+HKYE+ L+++G+IA  +SL    T F  KF F+P  G+L++
Sbjct:  482 SCTVTVSFSPKAALCYQCLAYCDIVGCGERVPLLLKGQGIGPKATFSYDELDVGDLFIGSKHKYEVDLISRGDIAVNYSLQPLETAFGPKFRFTPDSGRLEV 583          
BLAST of mRNA_C-tenellus_contig9984.1.1 vs. uniprot
Match: A0A8J1Z3W3_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1Z3W3_9DINO)

HSP 1 Score: 102 bits (254), Expect = 1.060e-22
Identity = 43/99 (43.43%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   85 VTIFFRPDTAVEYSSRAFLDCVGREERLPLLLSAGGIGPKVVLSFDVLDMGDIFISSRHKYELTLMNKGEIAAEWSLSAPSTPFAEKFTFSPTYGKLDI 381
            VTI F P +A+ Y   A+    G++ER+P+ L+  GIGPK   SFD +D+GDIF+ S H+YE+ ++N+G+IA  + L   ++PF  KF+F+P  G+L++
Sbjct:  454 VTISFSPKSALHYHCLAYCSIAGQQERIPIKLTGHGIGPKAAFSFDEMDVGDIFVESMHRYEVDIVNQGDIAVNYELMPNTSPFGSKFSFTPASGRLEV 552          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9984.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5Z3_9PHAE7.820e-4267.31MSP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJY6_ECTSI3.680e-4166.99Hydrocephalus-inducing protein, Hydin-like protein... [more]
F0Y448_AURAN7.070e-2755.45Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A482SNA2_9ARCH3.300e-2655.10Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A8J1XSC2_OWEFU4.750e-2453.61Ofus.G062473 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A8J1XSX0_OWEFU4.780e-2453.61Ofus.G062473 protein n=2 Tax=Owenia fusiformis Tax... [more]
A0A8J2SKS6_9STRA5.710e-2347.52Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J1ZKQ1_9DINO5.720e-2343.56Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A0G4EW24_VITBC7.810e-2348.04Uncharacterized protein n=11 Tax=Vitrella brassica... [more]
A0A8J1Z3W3_9DINO1.060e-2243.43Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9984contigC-tenellus_contig9984:1987..3065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FJY6
Preferred nameHYDIN
PFAMsASH,Hydin_ADK,Motile_Sperm,PapD-like
Model size393
Max annot lvl2759|Eukaryota
KEGG koko:K17570
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0002064,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0009888,GO:0009987,GO:0016043,GO:0021591,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030855,GO:0032501,GO:0032502,GO:0032838,GO:0035082,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0048468,GO:0048513,GO:0048731,GO:0048856,GO:0048869,GO:0060271,GO:0060322,GO:0060429,GO:0060438,GO:0060541,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1904158,GO:1990716,GO:1990718
Exons2
Evalue6.04e-42
EggNOG OGs28HT9@1|root,2QQ4F@2759|Eukaryota
Descriptionaxonemal central apparatus assembly
Cds size393
COG categoryS
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790209.9866083-CDS-C-tenellus_contig9984:1986..22561680790209.9866083-CDS-C-tenellus_contig9984:1986..2256Choristocarpus tenellus KU2346CDSC-tenellus_contig9984 1987..2256 +
1680790209.9995203-CDS-C-tenellus_contig9984:2942..30651680790209.9995203-CDS-C-tenellus_contig9984:2942..3065Choristocarpus tenellus KU2346CDSC-tenellus_contig9984 2943..3065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9984.1.1prot_C-tenellus_contig9984.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9984 1987..3065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9984.1.1

>prot_C-tenellus_contig9984.1.1 ID=prot_C-tenellus_contig9984.1.1|Name=mRNA_C-tenellus_contig9984.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=131bp
HSIFYISLSSVAKVMSPYSSSTTFFSLQVTIFFRPDTAVEYSSRAFLDCV
GREERLPLLLSAGGIGPKVVLSFDVLDMGDIFISSRHKYELTLMNKGEIA
AEWSLSAPSTPFAEKFTFSPTYGKLDIKNR*
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mRNA from alignment at C-tenellus_contig9984:1987..3065+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9984.1.1 ID=mRNA_C-tenellus_contig9984.1.1|Name=mRNA_C-tenellus_contig9984.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1079bp|location=Sequence derived from alignment at C-tenellus_contig9984:1987..3065+ (Choristocarpus tenellus KU2346)
CACTCAATATTTTATATATCCTTGTCATCAGTTGCCAAGGTTATGTCCCC TTACTCCAGTTCCACCACGTTCTTTTCTTTGCAGGTGACAATATTCTTCC GGCCAGACACCGCCGTGGAGTATTCCTCCCGAGCTTTCTTGGACTGTGTT GGACGGGAGGAGAGACTCCCTTTGTTGCTGAGTGCTGGAGGCATTGGGCC AAAGGTGGTGCTCAGCTTTGATGTTTTGGATATGGGGGACATATTCATCA GCAGCAGACACAAGTATGAGGTGTGTAGGCTTGCACCTCGCGCACAGTTT TTGCATGATTTTAGTTGATTTCAAACGGAAAACCCAGAACAAGCATGGAC TCAATACTCATCAAAGTCGCCAATCAGGTTGAGAAGCTTTCCATACTTAA TTGAAAGTGAAATAGGTACAAGCCGTCATGAGATGTTGCTTCAATGTAAT ATGTACTGGGTATTTCCGATGTCCATACTCTATAAAGGAGCTGACCATGG AATTATTGCTGGGGAAAAAACGAGAGCATTTATATAGACAGCCTTAGGCG CACTCTCCACTAAGCAAGATAGGCCAAACAGAGGGCAGCCAGATATGGCA CAATGTGCAGTATGTGCAATATTTTGAATATTCATGGGCTCAGCCACTCA AGTCTGACCACAACTGAAGCCTCAATAAAGACTTTGGTCTCAAAGGTTGT GCTACGTAGATCATGCCAGCATCTTTGGTCACTCATGCTCTCAAGTGGTT TGATTCAAGCAACGTCACAATGGTTGGTGTGTGTGTGTATGTGTGTGCAT GAATTGCTCTCTTAAGGACATGATAATTATTTCAAATCACAATGCTTTTA CTTCTACATTGCAAGTTATTTATATGGATTCTATAGTCTCTCTATATGTG GCATTTTGTGTGCAGCTAACCTTGTACTGCATGCTCTCTCTTTTCTACCC GACCAGTTGACCCTGATGAACAAGGGAGAAATAGCCGCTGAGTGGTCCTT GAGTGCACCAAGCACCCCATTTGCTGAAAAGTTCACTTTTTCCCCAACCT ATGGAAAACTTGACATCAAGAACAGGTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9984:1987..3065+

>mRNA_C-tenellus_contig9984.1.1 ID=mRNA_C-tenellus_contig9984.1.1|Name=mRNA_C-tenellus_contig9984.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=393bp|location=Sequence derived from alignment at C-tenellus_contig9984:1987..3065+ (Choristocarpus tenellus KU2346)
CACTCAATATTTTATATATCCTTGTCATCAGTTGCCAAGGTTATGTCCCC
TTACTCCAGTTCCACCACGTTCTTTTCTTTGCAGGTGACAATATTCTTCC
GGCCAGACACCGCCGTGGAGTATTCCTCCCGAGCTTTCTTGGACTGTGTT
GGACGGGAGGAGAGACTCCCTTTGTTGCTGAGTGCTGGAGGCATTGGGCC
AAAGGTGGTGCTCAGCTTTGATGTTTTGGATATGGGGGACATATTCATCA
GCAGCAGACACAAGTATGAGTTGACCCTGATGAACAAGGGAGAAATAGCC
GCTGAGTGGTCCTTGAGTGCACCAAGCACCCCATTTGCTGAAAAGTTCAC
TTTTTCCCCAACCTATGGAAAACTTGACATCAAGAACAGGTAG
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