mRNA_C-tenellus_contig9866.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9866.2.1
Unique NamemRNA_C-tenellus_contig9866.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9866.2.1 vs. uniprot
Match: D8LQB6_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB6_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 1.750e-97
Identity = 160/255 (62.75%), Postives = 198/255 (77.65%), Query Frame = 1
Query:    1 KLQLAVHFQELKEDFKNFRTEWETSGPMVEGISPLEGVERLRRFKEELQ-----SEIYADGEELFALRSTQHPELSKTKKEVGLLEQLYTLYMDVVDTLERYSDILWSGVEEELESMVDMIASFDTRCKKMPKKLRGRDLYMNSPTYHVIWKKISDFQDVLPLIQNLHKASIKPRHWHEVILITKTQFPFEREGFKLANILDSPILDFKEDVEEICEGADKQLSIEEKLSDIKDQWDTTSLDFVPWKNRGVSVLR 750
            K QL  + +ELKED + FR EWETSGPMV+GISPLE VERLRRFKEE+Q     +E+Y  GEELFAL+ T HP+L K KKE  LL+QLY LYMDV+ TLERY ++LW+   +EL +M +M+ASFD+RC+KMPKKLR  +       + V+ +KI+DFQ+VLP+I+NL K SIKPRHW EV+ ITKT FP+E E F L+NI+DSPIL FK+D+EEICEGADKQLSI EKL DI DQWD  + +F PWK+RGV VL+
Sbjct:   53 KKQLVKNVKELKEDVRKFRREWETSGPMVQGISPLEAVERLRRFKEEMQLRERTAEMYTAGEELFALKITAHPDLIKIKKESSLLDQLYGLYMDVLQTLERYREVLWTSAGDELVAMSEMVASFDSRCRKMPKKLREWE------AFQVLLRKITDFQEVLPIIENLRKPSIKPRHWQEVMDITKTNFPYESENFSLSNIMDSPILQFKDDIEEICEGADKQLSIAEKLDDITDQWDHAAFEFTPWKSRGVPVLK 301          
BLAST of mRNA_C-tenellus_contig9866.2.1 vs. uniprot
Match: A0A067CR94_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CR94_SAPPC)

HSP 1 Score: 240 bits (613), Expect = 6.960e-69
Identity = 124/255 (48.63%), Postives = 170/255 (66.67%), Query Frame = 1
Query:    1 KLQLAVHFQELKEDFKNFRTEWETSGPMVEGISPLEGVERLRRFKEEL-----QSEIYADGEELFALRSTQHPELSKTKKEVGLLEQLYTLYMDVVDTLERYSDILWSGVEEELESMVDMIASFDTRCKKMPKKLRGRDLYMNSPTYHVIWKKISDFQDVLPLIQNLHKASIKPRHWHEVILITKTQFPFEREGFKLANILDSPILDFKEDVEEICEGADKQLSIEEKLSDIKDQWDTTSLDFVPWKNRGVSVLR 750
            K QL    +E + D  +FR E+ T+GPMV G+ P E VERL RFKE L     + E+YA GEELF +R T++PEL+KT+KE+ LL+QLY LYMDVV T+E Y ++LWS V   L+ M   IA FD RCK+MP+KL   +       Y ++ K ISDF DVLPL++ L K  IKPRHW E++ +T T   +E + F+L ++LD+ +L  K+++E IC+ A KQL IE KL D+K+ W   S +F  WK+RG+ VL+
Sbjct: 1245 KKQLTKDVKEFQADAISFRAEYSTNGPMVSGLKPSEAVERLGRFKELLALRDRKLEVYAAGEELFGMRPTEYPELTKTRKELALLDQLYGLYMDVVQTMEGYRNVLWSTVPSTLDDMSSSIAIFDERCKRMPRKLCEWE------AYRLLRKDISDFVDVLPLVRELSKDCIKPRHWVEIVKMTGTPLQYESDAFRLKDLLDAKLLTTKDEIEYICDSAQKQLQIEMKLKDLKEAWAAASFEFGEWKSRGIPVLK 1493          
BLAST of mRNA_C-tenellus_contig9866.2.1 vs. uniprot
Match: A0A1W0A473_9STRA (Dynein heavy chain, outer arm n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A473_9STRA)

HSP 1 Score: 233 bits (594), Expect = 2.480e-66
Identity = 121/255 (47.45%), Postives = 167/255 (65.49%), Query Frame = 1
Query:    1 KLQLAVHFQELKEDFKNFRTEWETSGPMVEGISPLEGVERLRRFKEEL-----QSEIYADGEELFALRSTQHPELSKTKKEVGLLEQLYTLYMDVVDTLERYSDILWSGVEEELESMVDMIASFDTRCKKMPKKLRGRDLYMNSPTYHVIWKKISDFQDVLPLIQNLHKASIKPRHWHEVILITKTQFPFEREGFKLANILDSPILDFKEDVEEICEGADKQLSIEEKLSDIKDQWDTTSLDFVPWKNRGVSVLR 750
            K QL    +E + D   FRT++  +GPMV GI P E VERL RFKE L     + EIY+ GEELF +R T++PEL+K++KE+ LL+QLY LYMDVV T+E Y +ILWS V   LE M   I  FD RCK+MP+KL   +       Y ++ K+ISDF DVLP+I+ L K  IKPRHW +++  T     F+ + F+L ++LD+ +L  K+++E IC+ A KQL IE KL D+K+ W   + +F  WK+RG+ VL+
Sbjct: 1269 KKQLTKDVKEFQSDVVQFRTDYNNNGPMVSGIKPTEAVERLARFKEMLALRDRKLEIYSAGEELFGMRPTEYPELTKSRKELALLDQLYGLYMDVVQTMEGYRNILWSAVPGALEDMNTSITVFDERCKRMPRKLCEWE------AYRLLRKEISDFVDVLPIIRELSKDCIKPRHWQDIVNTTGVTLAFDSDTFRLKDLLDAHLLQNKDEIEYICDSAQKQLQIEIKLKDLKEVWAAATFEFGEWKSRGIPVLK 1517          
BLAST of mRNA_C-tenellus_contig9866.2.1 vs. uniprot
Match: A0A7S2NWU7_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2NWU7_9DINO)

HSP 1 Score: 219 bits (557), Expect = 2.820e-66
Identity = 114/250 (45.60%), Postives = 159/250 (63.60%), Query Frame = 1
Query:   34 KEDFKNFRTEWETSGPMVEGISPLEGVERLRRFKEEL-----QSEIYADGEELFALRSTQHPELSKTKKEVGLLEQLYTLYMDVVDTLERYSDILWSGVEEELESMVDMIASFDTRCKKMPKKLRGRDLYMNSPTYHVIWKKISDFQDVLPLIQNLHKASIKPRHWHEVILITKTQFPFEREGFKLANILDSPILDFKEDVEEICEGADKQLSIEEKLSDIKDQWDTTSLDFVPWKNRGVSVLRVRKRTG 768
            K+D + FR E+E SGPMV+GI P E VERL+RF+EE      +  IY  GE+LF +   Q+P L +TK+E+  L QLY LY+ V++T++ + D LW  V E +++M   I SF  RCKKMPK+LR      + P Y+ + K+I DFQ+VLPL+  L K SI PRHW +V+ IT  + P E E FKL +++D+ + +F +++ +ICE ADKQL IE KL +I  QWD    DF  WK R    + V  + G
Sbjct:   73 KKDVQKFRVEYERSGPMVKGIPPREAVERLKRFREEYDVRGRKQVIYYVGEDLFGVPHQQYPSLDQTKQELAYLGQLYDLYVAVLETIKEWRDYLWFEVPEHMDTMQKTIDSFAGRCKKMPKQLR------DWPAYNELKKEIEDFQEVLPLLMELGKPSIMPRHWQQVMEITGQELPIESENFKLQSLIDASLNEFTDEISDICESADKQLIIESKLKEISTQWDGMYFDFAGWKQRDYPCILVGAKVG 316          
BLAST of mRNA_C-tenellus_contig9866.2.1 vs. uniprot
Match: A0A1V9ZIN3_9STRA (Dynein heavy chain, outer arm n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZIN3_9STRA)

HSP 1 Score: 231 bits (590), Expect = 8.520e-66
Identity = 120/255 (47.06%), Postives = 166/255 (65.10%), Query Frame = 1
Query:    1 KLQLAVHFQELKEDFKNFRTEWETSGPMVEGISPLEGVERLRRFKEEL-----QSEIYADGEELFALRSTQHPELSKTKKEVGLLEQLYTLYMDVVDTLERYSDILWSGVEEELESMVDMIASFDTRCKKMPKKLRGRDLYMNSPTYHVIWKKISDFQDVLPLIQNLHKASIKPRHWHEVILITKTQFPFEREGFKLANILDSPILDFKEDVEEICEGADKQLSIEEKLSDIKDQWDTTSLDFVPWKNRGVSVLR 750
            K QL    +E + D   FR ++  +GPMV GI P E VERL R+KE L     + E+YA GEELF +R T++PEL+KT+KE+ LL+QLY LYMDVV T+E Y ++LW+ V   L+ M   IA FD RCK+MPKKL   +       Y ++ K ISDF +VLPL++ L K  IKPRHW E+I +T      + E F+L ++LD+ +L  K+++E IC+ A KQL IE KL D+K+ W   + +F  WK+RG+ VL+
Sbjct: 1252 KKQLTKDVKEFQVDALAFRADYNANGPMVSGIKPAEAVERLARYKEMLALRDRKLEVYAAGEELFGMRPTEYPELTKTRKELALLDQLYGLYMDVVQTMEGYRNVLWTAVPATLDDMSASIAVFDERCKRMPKKLCEWE------AYRLLRKDISDFVEVLPLVRELSKDCIKPRHWQEIIKMTGIALGVDNESFRLKDLLDAKLLQTKDEIEYICDAAQKQLQIEIKLKDLKEAWAAATFEFGEWKSRGIPVLK 1500          
BLAST of mRNA_C-tenellus_contig9866.2.1 vs. uniprot
Match: F0Y790_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y790_AURAN)

HSP 1 Score: 229 bits (585), Expect = 3.980e-65
Identity = 120/258 (46.51%), Postives = 170/258 (65.89%), Query Frame = 1
Query:    1 KLQLAVHFQELKEDFKNFRTEWETSGPMVEGISPLEGVERLRRFKEEL-----QSEIYADGEELFALRSTQHPELSKTKKEVGLLEQLYTLYMDVVDTLERYSDILWSGVEEELESMVDMIASFDTRCKKMPKKLRGRDLYMNSPTYHVIWKKISDFQDVLPLIQNLHKASIKPRHWHEVILITKTQFPFEREGFKLANILDSPILDFKED----VEEICEGADKQLSIEEKLSDIKDQWDTTSLDFVPWKNRGVSVL 747
            K QL +  +E   D ++FR+++E +GP   GI P E VERLRR+K+EL     + E+Y  GEELFALR++++PEL +T+KEVGLL+QLY+LY+DV+  ++    +LWS V   L+ M+D  A+FD RC+ MPK+LR    Y +  T     ++  DFQ++LPLI  L K SIKPRHW E+        P+++E F+L +I +SP+L F+E     VEEICEGADKQL IE KL+D+++ W   +  F  WK R V +L
Sbjct: 1071 KKQLILDVREFVADCRSFRSDFEDNGPQQPGIPPQEAVERLRRYKDELGIRERKMEMYVAGEELFALRTSKYPELLRTRKEVGLLDQLYSLYLDVIQAVDGQRSVLWSDVPGLLQGMIDETAAFDLRCRNMPKRLREWPAYTDLRTKLTARRR--DFQELLPLISELSKPSIKPRHWLELFETIGASLPYDKEAFQLQDIFESPVLKFREQARPRVEEICEGADKQLGIETKLNDLRELWARNAFTFSQWKGRDVPIL 1326          
BLAST of mRNA_C-tenellus_contig9866.2.1 vs. uniprot
Match: K3WB71_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WB71_GLOUD)

HSP 1 Score: 229 bits (583), Expect = 7.400e-65
Identity = 118/255 (46.27%), Postives = 164/255 (64.31%), Query Frame = 1
Query:    1 KLQLAVHFQELKEDFKNFRTEWETSGPMVEGISPLEGVERLRRFKE-----ELQSEIYADGEELFALRSTQHPELSKTKKEVGLLEQLYTLYMDVVDTLERYSDILWSGVEEELESMVDMIASFDTRCKKMPKKLRGRDLYMNSPTYHVIWKKISDFQDVLPLIQNLHKASIKPRHWHEVILITKTQFPFEREGFKLANILDSPILDFKEDVEEICEGADKQLSIEEKLSDIKDQWDTTSLDFVPWKNRGVSVLR 750
            K QL    ++ + D   FR ++  +GPMV G+ P E VERL+RFK+     E + E+Y+ GEELF +R T++PEL +TKKE+ LL+QLY LYMDVV+T E +  I W+ V   ++ M D    FD RCKKMPKKL   +       YH++ K I++F ++LPLI+ L + SIK RHW E+I I       E E FK  +IL++ +L +KEDVE ICE A KQL IE K+ DIK++W  TS +F  W++R V +L+
Sbjct: 1250 KKQLIKDVKDFQVDILQFRCDYNDNGPMVSGLQPAEAVERLKRFKDLILTRERKLEVYSAGEELFGMRQTEYPELVRTKKELALLDQLYGLYMDVVNTTEEFKAITWNQVSGSIQRMSDSFNGFDLRCKKMPKKLCEWE------AYHILRKDINEFLEMLPLIRELSRESIKTRHWEELIKICGQHLQVESEAFKFQDILEAKLLTWKEDVENICESAQKQLQIENKIKDIKERWAGTSFEFGEWRSRNVPILK 1498          
BLAST of mRNA_C-tenellus_contig9866.2.1 vs. uniprot
Match: A0A6G0X2F4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2F4_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.010e-64
Identity = 123/255 (48.24%), Postives = 158/255 (61.96%), Query Frame = 1
Query:    1 KLQLAVHFQELKEDFKNFRTEWETSGPMVEGISPLEGVERLRRFKEEL-----QSEIYADGEELFALRSTQHPELSKTKKEVGLLEQLYTLYMDVVDTLERYSDILWSGVEEELESMVDMIASFDTRCKKMPKKLRGRDLYMNSPTYHVIWKKISDFQDVLPLIQNLHKASIKPRHWHEVILITKTQFPFEREGFKLANILDSPILDFKEDVEEICEGADKQLSIEEKLSDIKDQWDTTSLDFVPWKNRGVSVLR 750
            K QL    +E + D   FRTE+   GPMV GI P E VERL RFKE L     + E+Y  GEELF +R T++PEL KT+KE+ LL+QLY LYMDVV T+E Y +I WS V   LE M   +  FD RCKKMPKKL   +       Y ++ K ISD  D+LPLI+ L    IK RHW EV+    +  P E E FKL ++LD+ +   K+++E IC+ A KQL IE KL +IK+ W T S +F  WK+R + VL+
Sbjct: 1254 KKQLTKDVKEFQADVLQFRTEYTVHGPMVSGIKPTEAVERLARFKESLALRDHKLEVYTAGEELFGMRPTEYPELVKTRKELALLDQLYGLYMDVVQTMEGYRNIYWSVVPSMLEEMTTSLHGFDERCKKMPKKLCEWE------AYRLLRKDISDMLDMLPLIRELSADCIKLRHWQEVVKFATSPLPVESEAFKLKDLLDAKLFGHKDEIEAICDSAHKQLQIETKLKEIKEIWTTASFEFGEWKSRTIPVLK 1502          
BLAST of mRNA_C-tenellus_contig9866.2.1 vs. uniprot
Match: A0A8K1FD29_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD29_PYTOL)

HSP 1 Score: 228 bits (582), Expect = 1.010e-64
Identity = 117/255 (45.88%), Postives = 167/255 (65.49%), Query Frame = 1
Query:    1 KLQLAVHFQELKEDFKNFRTEWETSGPMVEGISPLEGVERLRRFKE-----ELQSEIYADGEELFALRSTQHPELSKTKKEVGLLEQLYTLYMDVVDTLERYSDILWSGVEEELESMVDMIASFDTRCKKMPKKLRGRDLYMNSPTYHVIWKKISDFQDVLPLIQNLHKASIKPRHWHEVILITKTQFPFEREGFKLANILDSPILDFKEDVEEICEGADKQLSIEEKLSDIKDQWDTTSLDFVPWKNRGVSVLR 750
            K QL    ++ + D   FR ++  +GPMV G+ P+E VERL+RFKE     E + E+Y  GEELF +R T++PEL +TKKE+ LL+QLY LYMDVV+TL+ +  +LWS V   +  M ++  SFD RCKK+PKKL   +       YH++ K I++F ++LP+I+ L   SIK RHW +V+ I     P E E F+  ++L++ +L +KEDVE ICE A KQL IE K+ DIK++W  TS +F  W++R V VL+
Sbjct: 1237 KKQLIKDIKDFQVDILQFRCDYNENGPMVSGLQPVEAVERLKRFKELMLLRERKLEMYTAGEELFGMRPTEYPELMRTKKELALLDQLYGLYMDVVNTLDEFRCVLWSQVASTVPRMTEIFTSFDVRCKKLPKKLCEWE------AYHILRKDINEFLEILPIIKELAHESIKARHWDDVMRICGKTLPVESEIFRFQDVLEARLLTWKEDVEYICESAQKQLQIEHKIKDIKERWAGTSFEFGEWRSRNVPVLK 1485          
BLAST of mRNA_C-tenellus_contig9866.2.1 vs. uniprot
Match: A0A3L6V6W9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V6W9_9STRA)

HSP 1 Score: 227 bits (579), Expect = 2.310e-64
Identity = 119/255 (46.67%), Postives = 161/255 (63.14%), Query Frame = 1
Query:    1 KLQLAVHFQELKEDFKNFRTEWETSGPMVEGISPLEGVERLRRFKEEL-----QSEIYADGEELFALRSTQHPELSKTKKEVGLLEQLYTLYMDVVDTLERYSDILWSGVEEELESMVDMIASFDTRCKKMPKKLRGRDLYMNSPTYHVIWKKISDFQDVLPLIQNLHKASIKPRHWHEVILITKTQFPFEREGFKLANILDSPILDFKEDVEEICEGADKQLSIEEKLSDIKDQWDTTSLDFVPWKNRGVSVLR 750
            K QL    ++ + D   FRTE+  +GPMV GI P E VERL RFK+ L     + E+YA GEELF +R T++PEL+KT+KE+ LL+QLY LYMDVV T+E Y  I WS V   L+ M   +  FD RCK+MPKKL   +       Y ++ K ISD  D+LPLI+ L    IK RHW +V+ +     P E E FKL ++LD+ +L  K+D+E IC+ A KQL IE KL +IK+ W + + +F  WK+R + VL+
Sbjct:  134 KKQLTKDVKDFQADVLQFRTEYTVNGPMVSGIKPTEAVERLARFKDSLALRDRKLEVYAAGEELFGMRPTEYPELTKTRKELALLDQLYGLYMDVVQTMEGYRGIYWSAVPSMLDDMTSSLNVFDERCKRMPKKLCEWE------AYRLLRKDISDMVDMLPLIRELSADCIKLRHWQDVVKLAAAPLPVESEAFKLKDLLDAKLLGHKDDIEAICDSAHKQLQIETKLKEIKEVWTSAAFEFGEWKSRTIPVLK 382          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9866.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQB6_ECTSI1.750e-9762.75Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A067CR94_SAPPC6.960e-6948.63Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A1W0A473_9STRA2.480e-6647.45Dynein heavy chain, outer arm n=1 Tax=Thraustothec... [more]
A0A7S2NWU7_9DINO2.820e-6645.60Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A1V9ZIN3_9STRA8.520e-6647.06Dynein heavy chain, outer arm n=3 Tax=Saprolegniac... [more]
F0Y790_AURAN3.980e-6546.51Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
K3WB71_GLOUD7.400e-6546.27Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6G0X2F4_9STRA1.010e-6448.24Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A8K1FD29_PYTOL1.010e-6445.88Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3L6V6W9_9STRA2.310e-6446.67Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9866contigC-tenellus_contig9866:3410..5629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LQB6
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size777
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005623,GO:0005929,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0034622,GO:0035082,GO:0036158,GO:0040011,GO:0042995,GO:0043226,GO:0043933,GO:0044085,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036
Exons6
Evalue2.87e-98
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size777
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9866.2.1prot_C-tenellus_contig9866.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9866 3410..5629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790204.9825194-CDS-C-tenellus_contig9866:3409..35591680790204.9825194-CDS-C-tenellus_contig9866:3409..3559Choristocarpus tenellus KU2346CDSC-tenellus_contig9866 3410..3559 -
1680790204.997686-CDS-C-tenellus_contig9866:3974..41721680790204.997686-CDS-C-tenellus_contig9866:3974..4172Choristocarpus tenellus KU2346CDSC-tenellus_contig9866 3975..4172 -
1680790205.007023-CDS-C-tenellus_contig9866:4493..45211680790205.007023-CDS-C-tenellus_contig9866:4493..4521Choristocarpus tenellus KU2346CDSC-tenellus_contig9866 4494..4521 -
1680790205.018325-CDS-C-tenellus_contig9866:4558..46721680790205.018325-CDS-C-tenellus_contig9866:4558..4672Choristocarpus tenellus KU2346CDSC-tenellus_contig9866 4559..4672 -
1680790205.031871-CDS-C-tenellus_contig9866:4991..51311680790205.031871-CDS-C-tenellus_contig9866:4991..5131Choristocarpus tenellus KU2346CDSC-tenellus_contig9866 4992..5131 -
1680790205.0452108-CDS-C-tenellus_contig9866:5482..56291680790205.0452108-CDS-C-tenellus_contig9866:5482..5629Choristocarpus tenellus KU2346CDSC-tenellus_contig9866 5483..5629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9866.2.1

>prot_C-tenellus_contig9866.2.1 ID=prot_C-tenellus_contig9866.2.1|Name=mRNA_C-tenellus_contig9866.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=259bp
KLQLAVHFQELKEDFKNFRTEWETSGPMVEGISPLEGVERLRRFKEELQS
EIYADGEELFALRSTQHPELSKTKKEVGLLEQLYTLYMDVVDTLERYSDI
LWSGVEEELESMVDMIASFDTRCKKMPKKLRGRDLYMNSPTYHVIWKKIS
DFQDVLPLIQNLHKASIKPRHWHEVILITKTQFPFEREGFKLANILDSPI
LDFKEDVEEICEGADKQLSIEEKLSDIKDQWDTTSLDFVPWKNRGVSVLR
VRKRTGID*
back to top

mRNA from alignment at C-tenellus_contig9866:3410..5629-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9866.2.1 ID=mRNA_C-tenellus_contig9866.2.1|Name=mRNA_C-tenellus_contig9866.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2220bp|location=Sequence derived from alignment at C-tenellus_contig9866:3410..5629- (Choristocarpus tenellus KU2346)
AAACTACAACTTGCTGTGCACTTCCAGGAGCTCAAGGAAGACTTCAAGAA TTTCCGAACCGAGTGGGAGACATCTGGTCCTATGGTGGAGGGGATCTCGC CCCTTGAGGGGGTGGAACGTCTGCGACGCTTTAAAGAGGAACTACAAGTC CTTGAAAGAAAGGCAAATCAATGCTCAAACGAATGTAGTATTTCCCTTTT CATTACTAGTCTGCTGAACAAGAATGAACCTAAGGATTTATTTCAAAGGG ACAGCTTTGCAAAAAAAACTGCAATGATAATGAAGAAGAGTATCATTCCC ATAGGCTTCATCAGTAACCTATCTGAACATGCCCTTGAGCTTCCATTCAA CTCTAAGTAGCTCTAGGGAGTCGATTGGACACCTTACTTGCAAAGCTAGG CACATCAAGAACATTTGAGAGATTAGCAATGCATGATAATCAAGGAGTTC TGCTGGCAAGAGACTCTACTGTCCTCCTCTCCATTTTTCTTTTTTCAGTC CGAGATATATGCTGATGGTGAAGAGCTGTTTGCTCTCCGATCAACACAAC ACCCCGAGCTTAGCAAGACCAAGAAAGAGGTCGGCCTCTTGGAGCAGCTG TACACGTTATATATGGATGTTGTTGACACGCTTGAGAGGTGGGTTTCTCA AGTGAGACCTTGAAGTGAACTGCTTCGAGTAAGTGTTCTGCTATACCTTC TTCACTCGGCACATTTGAAATGTTCATTGCCCCAAACATGCAATGGGGAA AGAAATATATATATATATATATATATATACATATATATACTTGGAGATTT CTTTTGCAGCTCAATCAATGATGGATTCACAAAGTTGTGAGGCGAGGGAT GCTATTTTCGGGCAGTATCACATTTGGGATAAAAACATCACCCTTAGTCC CAGGCATTGCCAACCTGAATATCTTGCTATCAACAATGTCCCCTTTGTGT ATGAAAGGTACTCGGACATCTTGTGGAGTGGAGTGGAGGAGGAACTAGAG TCAATGGTGGATATGATAGCCTCATTTGATACTCGATGTAAGAAAATGCC GAAGAAGCTTCGGGGAAGAGAGTCATTCCAGGCAAGACCATCTCCAATAA TGTGCTAGCCTCTATATGAATTCACCCACCTATCATGTTGGTCATTCAAG CGAATTTTTAGTTGTGCGTGTGGATGTTTATTTCGTGTCGTCAGCTTTTG TTTTGTTTGTATGTATATCCAACCTAACAGTCATATATATATATACATAC TATGTCAAGATTTTGTTCATGCATCGGAAAATCTGAAAGATAATTTTATA TGTCGGTCGCAAAGTGTTTTTTTCCCCTAAACAGAGAGTCATCATGCTTT TAATAATAAGAACACTACAAGCTTTGTCAAAGCATTATTTTCATCTATTC CCTGTACAGCTCTACTTTATTTCCCTGTCTGATCTAGAACAATTCCACTG CATACAGGTCATTTGGAAGAAGATCTCCGACTTCCAGGACGTGCTTCCTC TCATACAGAACCTCCACAAGGCTAGCATCAAGCCCAGGCACTGGCACGAG GTCATCCTCATCACTAAGACCCAATTCCCGTTTGAACGGGAGGGTTTCAA GCTCGCGAATATCCTGGACAGTCCAATATTGGACTTCAAGGAAGATGTTG AGGAGGTCAAGATCCATTTAAAAGTTTGATGCCCATGCAATGGAGTGCCC TTAAAATGCAGAGTGTAGAGGAAAATTGTAGAAAGATGTACTGATTTATC TAGTACAATACTGTTCAACGTGACAAAATACAATTTGGATCAGTTCTGGT CAATGAAGATTGTGCCAGAACACCCAGAAATTACAGTTACGCAACATGGT CCTCCTGTTCAGCAGTGTCCTGTTCTATATTCTTTTACTACCTTTTTTCA AGAGATCGAAAGGTTCCGCAATTAGAATCATTACAAAAAAGATCAATTTA GGACAAAACATACACATCCCAGAGAGGAGGGTATATTCCACATATTTTCA AACTGTCAGCAGAATCCGTATCCCACACAAGAGGTTAATTTTGTTACCTT GTCCATGCGTCTTAAATCAGATATGCGAAGGTGCAGATAAGCAGCTCTCC ATTGAGGAGAAACTTAGCGACATTAAGGACCAATGGGATACAACTTCCCT TGACTTCGTGCCTTGGAAGAACAGGGGTGTGTCAGTGCTAAGGGTGAGAA AAAGAACTGGAATTGATTAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9866:3410..5629-

>mRNA_C-tenellus_contig9866.2.1 ID=mRNA_C-tenellus_contig9866.2.1|Name=mRNA_C-tenellus_contig9866.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=777bp|location=Sequence derived from alignment at C-tenellus_contig9866:3410..5629- (Choristocarpus tenellus KU2346)
AAACTACAACTTGCTGTGCACTTCCAGGAGCTCAAGGAAGACTTCAAGAA
TTTCCGAACCGAGTGGGAGACATCTGGTCCTATGGTGGAGGGGATCTCGC
CCCTTGAGGGGGTGGAACGTCTGCGACGCTTTAAAGAGGAACTACAATCC
GAGATATATGCTGATGGTGAAGAGCTGTTTGCTCTCCGATCAACACAACA
CCCCGAGCTTAGCAAGACCAAGAAAGAGGTCGGCCTCTTGGAGCAGCTGT
ACACGTTATATATGGATGTTGTTGACACGCTTGAGAGGTACTCGGACATC
TTGTGGAGTGGAGTGGAGGAGGAACTAGAGTCAATGGTGGATATGATAGC
CTCATTTGATACTCGATGTAAGAAAATGCCGAAGAAGCTTCGGGGAAGAG
ACCTCTATATGAATTCACCCACCTATCATGTCATTTGGAAGAAGATCTCC
GACTTCCAGGACGTGCTTCCTCTCATACAGAACCTCCACAAGGCTAGCAT
CAAGCCCAGGCACTGGCACGAGGTCATCCTCATCACTAAGACCCAATTCC
CGTTTGAACGGGAGGGTTTCAAGCTCGCGAATATCCTGGACAGTCCAATA
TTGGACTTCAAGGAAGATGTTGAGGAGATATGCGAAGGTGCAGATAAGCA
GCTCTCCATTGAGGAGAAACTTAGCGACATTAAGGACCAATGGGATACAA
CTTCCCTTGACTTCGTGCCTTGGAAGAACAGGGGTGTGTCAGTGCTAAGG
GTGAGAAAAAGAACTGGAATTGATTAG
back to top