mRNA_C-tenellus_contig9866.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9866.1.1
Unique NamemRNA_C-tenellus_contig9866.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig9866.1.1 vs. uniprot
Match: D8LQB6_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB6_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 7.220e-25
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    4 FDSQCQEALDKCRSNRSIMNETNRAQLSVLQEMSSWCLQDLGTKMNRTKVETLVTIQV 177
            + +QCQEALDKCR+N+SIM+ETNR QL VLQEMSSWCLQDLGTKMNRTK+ETLVTIQV
Sbjct:  563 WTAQCQEALDKCRTNKSIMSETNRGQLGVLQEMSSWCLQDLGTKMNRTKIETLVTIQV 620
[Close]
BLAST of mRNA_C-tenellus_contig9866.1.1 vs. uniprot
Match: A0A6H5KIA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA9_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.350e-24
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:   13 QCQEALDKCRSNRSIMNETNRAQLSVLQEMSSWCLQDLGTKMNRTKVETLVTIQV 177
            QCQEALDKCR+N+SIM+ETNR QL VLQEMSSWCLQDLGTKMNRTK+ETLVTIQV
Sbjct: 1688 QCQEALDKCRTNKSIMSETNRGQLGVLQEMSSWCLQDLGTKMNRTKIETLVTIQV 1742
[Close]
BLAST of mRNA_C-tenellus_contig9866.1.1 vs. uniprot
Match: A0A482T2R1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2R1_9ARCH)

HSP 1 Score: 89.0 bits (219), Expect = 3.460e-19
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 LFDSQCQEALDKCRSNRSIMNETNRAQLSVLQEMSSWCLQDLGTKMNRTKVETLVTIQV 177
            ++ SQCQEAL K RSN+ +M ETN+ QLS LQ++S+WCL+DLG+KMNR K+ETLVTIQV
Sbjct: 1525 MWTSQCQEALSKARSNKQVMVETNKMQLSTLQDLSAWCLEDLGSKMNRIKIETLVTIQV 1583
[Close]
BLAST of mRNA_C-tenellus_contig9866.1.1 vs. uniprot
Match: A0A7S3HHP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHP9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.800e-19
Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 LFDSQCQEALDKCRSNRSIMNETNRAQLSVLQEMSSWCLQDLGTKMNRTKVETLVTIQV 177
            ++ +QCQ+AL K RSN+ +M ET R QL+ LQ++S WCL+DLGTK+NR KVETLVTIQV
Sbjct:    9 MWTTQCQDALSKARSNKQVMVETLRLQLATLQDLSGWCLEDLGTKINRIKVETLVTIQV 67
[Close]
BLAST of mRNA_C-tenellus_contig9866.1.1 vs. uniprot
Match: F0Y790_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y790_AURAN)

HSP 1 Score: 84.0 bits (206), Expect = 1.990e-17
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    4 FDSQCQEALDKCRSNRSIMNETNRAQLSVLQEMSSWCLQDLGTKMNRTKVETLVTIQV 177
            + +QCQEALDK +S++ I+ ETN+ QL+VLQE+SSWCL DL TKMNR K+ETLVTI V
Sbjct: 1589 WTAQCQEALDKSKSSKGIVGETNKQQLAVLQELSSWCLTDLKTKMNRRKIETLVTIHV 1646
[Close]
BLAST of mRNA_C-tenellus_contig9866.1.1 vs. uniprot
Match: A0A7S3ZPZ0_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPZ0_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.940e-17
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    4 FDSQCQEALDKCRSNRSIMNETNRAQLSVLQEMSSWCLQDLGTKMNRTKVETLVTIQV 177
            + +QCQEAL+K + N++I+ +TNR QL VLQE+SSWCL DL TKMNR K+ETLVTI V
Sbjct: 1725 WTAQCQEALEKSKQNKAIVQDTNRQQLVVLQELSSWCLNDLKTKMNRRKIETLVTIHV 1782
[Close]
BLAST of mRNA_C-tenellus_contig9866.1.1 vs. uniprot
Match: A0A4D9CRU4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRU4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.940e-17
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 LFDSQCQEALDKCRSNRSIMNETNRAQLSVLQEMSSWCLQDLGTKMNRTKVETLVTIQV 177
            L+   CQ AL+ C++ + IM ETN+ QL+VLQEMSSWCLQDLG+K NR K+ETLVTI V
Sbjct: 2037 LWTMDCQTALETCKTKKHIMKETNQKQLAVLQEMSSWCLQDLGSKANRRKIETLVTIHV 2095
[Close]
BLAST of mRNA_C-tenellus_contig9866.1.1 vs. uniprot
Match: A0A835YLK0_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.150e-15
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 LFDSQCQEALDKCRSNRSIMNETNRAQLSVLQEMSSWCLQDLGTKMNRTKVETLVTIQV 177
            L+ +  Q AL++CR+ +++M ETN  QL +L EMSSWCLQDLG++ NRTK+ETLVTI V
Sbjct: 1768 LWTADVQSALEQCRAKKNVMKETNAKQLQILHEMSSWCLQDLGSRDNRTKIETLVTIHV 1826
[Close]
BLAST of mRNA_C-tenellus_contig9866.1.1 vs. uniprot
Match: K3WB71_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WB71_GLOUD)

HSP 1 Score: 79.0 bits (193), Expect = 1.150e-15
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    4 FDSQCQEALDKCRSNRSIMNETNRAQLSVLQEMSSWCLQDLGTKMNRTKVETLVTIQV 177
            + ++CQEAL KCR+ + +M +T +   S+L E+SSWCL DLGTKM RTKVETL+TIQV
Sbjct: 1763 WTAECQEALQKCRTTKGVMQQTAKKHGSMLSELSSWCLTDLGTKMTRTKVETLITIQV 1820
[Close]
BLAST of mRNA_C-tenellus_contig9866.1.1 vs. uniprot
Match: A0A1W0A473_9STRA (Dynein heavy chain, outer arm n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A473_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.150e-15
Identity = 35/59 (59.32%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 LFDSQCQEALDKCRSNRSIMNETNRAQLSVLQEMSSWCLQDLGTKMNRTKVETLVTIQV 177
            L+ +Q QEAL KC+S + IM++T++ Q+ +L E+SSWCL DLGTK+NR K+ETL+TIQV
Sbjct: 1778 LWTAQSQEALQKCKSVKGIMSDTSKKQVMLLSELSSWCLTDLGTKLNRIKIETLITIQV 1836
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9866.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQB6_ECTSI7.220e-2584.48Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KIA9_9PHAE1.350e-2489.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482T2R1_9ARCH3.460e-1967.80Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3HHP9_9STRA4.800e-1964.41Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
F0Y790_AURAN1.990e-1767.24Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3ZPZ0_9STRA6.940e-1765.52Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A4D9CRU4_9STRA6.940e-1764.41Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835YLK0_9STRA1.150e-1559.32Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
K3WB71_GLOUD1.150e-1560.34Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1W0A473_9STRA1.150e-1559.32Dynein heavy chain, outer arm n=1 Tax=Thraustothec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9866contigC-tenellus_contig9866:95..280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LQB6
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size186
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005623,GO:0005929,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0034622,GO:0035082,GO:0036158,GO:0040011,GO:0042995,GO:0043226,GO:0043933,GO:0044085,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036
Exons1
Evalue1.18e-25
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size186
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790204.9514096-CDS-C-tenellus_contig9866:94..2801680790204.9514096-CDS-C-tenellus_contig9866:94..280Choristocarpus tenellus KU2346CDSC-tenellus_contig9866 95..280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9866.1.1prot_C-tenellus_contig9866.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9866 95..280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9866.1.1

>prot_C-tenellus_contig9866.1.1 ID=prot_C-tenellus_contig9866.1.1|Name=mRNA_C-tenellus_contig9866.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=62bp
LFDSQCQEALDKCRSNRSIMNETNRAQLSVLQEMSSWCLQDLGTKMNRTK
VETLVTIQVCP*
back to top

mRNA from alignment at C-tenellus_contig9866:95..280-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9866.1.1 ID=mRNA_C-tenellus_contig9866.1.1|Name=mRNA_C-tenellus_contig9866.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=186bp|location=Sequence derived from alignment at C-tenellus_contig9866:95..280- (Choristocarpus tenellus KU2346)
TTGTTCGATTCACAGTGTCAAGAGGCCCTCGACAAATGCAGATCCAACAG
GAGTATCATGAACGAGACCAACAGAGCTCAGCTCTCGGTACTTCAAGAGA
TGAGCTCCTGGTGCCTACAAGATCTGGGTACCAAGATGAACCGCACGAAG
GTGGAGACGCTGGTGACTATTCAGGTATGCCCATAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9866:95..280-

>mRNA_C-tenellus_contig9866.1.1 ID=mRNA_C-tenellus_contig9866.1.1|Name=mRNA_C-tenellus_contig9866.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=186bp|location=Sequence derived from alignment at C-tenellus_contig9866:95..280- (Choristocarpus tenellus KU2346)
TTGTTCGATTCACAGTGTCAAGAGGCCCTCGACAAATGCAGATCCAACAG
GAGTATCATGAACGAGACCAACAGAGCTCAGCTCTCGGTACTTCAAGAGA
TGAGCTCCTGGTGCCTACAAGATCTGGGTACCAAGATGAACCGCACGAAG
GTGGAGACGCTGGTGACTATTCAGGTATGCCCATAG
back to top